mRNA_L-elsbetiae_contig630.14936.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig630.14936.1
Unique NamemRNA_L-elsbetiae_contig630.14936.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig630.14936.1 vs. uniprot
Match: D7FQV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV2_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.570e-24
Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 3 
Query:   48 IVLKGSTVEDAPEKASDGAPFAFCVRASYSAEDDKSPGQAWTLQASNRQEKCRWVNAIRGAAHRDTNGISPLGYPVDGEEGEEDSDNEAFVNPSRATAASAPTAVKGEGVA----ADTPTSSSEQSRIMDSLRLSFMSRRNSSEGSNVGGGSDSNNSAGVASDNGTGGEV 545
            + LKG +VEDAPEK  +GAPFAF VRA     +D +PG +WTLQAS RQEK RW+NAIRGAA R+ + +SP G P++       +D+ +FV+        A + + G G      A   +S +EQ R++D LR+S  ++R   E  +  G  DS NSA  ++  G  G+ 
Sbjct:    1 MALKGCSVEDAPEKVPEGAPFAFRVRAQQCPRNDDNPGASWTLQASTRQEKSRWMNAIRGAADREMDDVSPPGSPLN-------ADDTSFVD--------ADSGISGGGYGKEGDASNSSSGAEQHRVLDMLRMSAAAQRGFQESDSDSG--DSRNSASKSAGKGVDGKA 153
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BLAST of mRNA_L-elsbetiae_contig630.14936.1 vs. uniprot
Match: A0A6H5KTG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.410e-16
Identity = 69/170 (40.59%), Postives = 89/170 (52.35%), Query Frame = 3 
Query:    6 AFSGWGGGHSCVGRIVLKGSTVEDAPEKASDGAPFAFCVRASYSAEDDKSPGQAWTLQASNRQEKCRWVNAIRGAAHRDTNGISPLGYPVDGEEGEEDSDNEAFVNPSRATAASAPTAVKGEGVAADTPTSSS--EQSRIMDSLRLSFMSRRNSSEGSNVGGGSDSNNSA 509
            AFSGWGG H+CVG++ LKG +VEDAPEK  +GAPFAF VRA           Q W            W+NAIRGAA RD + +S  G P++       +D+ +FV+     +        G G   D   SSS  EQ RI+D  R+S  ++R   E  +  G  DS NSA
Sbjct:  764 AFSGWGGNHTCVGKMALKGCSVEDAPEKVPEGAPFAFRVRA-----------QQW------------WMNAIRGAADRDMDDVSLPGSPLN-------ADDTSFVDADSGRSGG------GYGKEGDASNSSSGAEQHRILDMFRMSPAAQRGFQESDSDSG--DSRNSA 895
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig630.14936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQV2_ECTSI5.570e-2441.76PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KTG5_9PHAE8.410e-1640.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig630contigL-elsbetiae_contig630:8428..11404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1476
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig630.14936.1prot_L-elsbetiae_contig630.14936.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig630 8430..10752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.5437958-UTR-L-elsbetiae_contig630:8427..84291622816694.5437958-UTR-L-elsbetiae_contig630:8427..8429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig630 8428..8429 +
1691683745.7681403-UTR-L-elsbetiae_contig630:8427..84291691683745.7681403-UTR-L-elsbetiae_contig630:8427..8429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig630 8428..8429 +
1622816694.5878108-UTR-L-elsbetiae_contig630:10752..114041622816694.5878108-UTR-L-elsbetiae_contig630:10752..11404Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig630 10753..11404 +
1691683745.8160775-UTR-L-elsbetiae_contig630:10752..114041691683745.8160775-UTR-L-elsbetiae_contig630:10752..11404Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig630 10753..11404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.5547044-CDS-L-elsbetiae_contig630:8429..85631622816694.5547044-CDS-L-elsbetiae_contig630:8429..8563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig630 8430..8563 +
1691683745.778701-CDS-L-elsbetiae_contig630:8429..85631691683745.778701-CDS-L-elsbetiae_contig630:8429..8563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig630 8430..8563 +
1622816694.565994-CDS-L-elsbetiae_contig630:9648..97171622816694.565994-CDS-L-elsbetiae_contig630:9648..9717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig630 9649..9717 +
1691683745.7883022-CDS-L-elsbetiae_contig630:9648..97171691683745.7883022-CDS-L-elsbetiae_contig630:9648..9717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig630 9649..9717 +
1622816694.577129-CDS-L-elsbetiae_contig630:10133..107521622816694.577129-CDS-L-elsbetiae_contig630:10133..10752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig630 10134..10752 +
1691683745.800725-CDS-L-elsbetiae_contig630:10133..107521691683745.800725-CDS-L-elsbetiae_contig630:10133..10752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig630 10134..10752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig630.14936.1

>prot_L-elsbetiae_contig630.14936.1 ID=prot_L-elsbetiae_contig630.14936.1|Name=mRNA_L-elsbetiae_contig630.14936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=274bp
MAFSGWGGGHSCVGRIVLKGSTVEDAPEKASDGAPFAFCVRASYSAEDDK
SPGQAWTLQASNRQEKCRWVNAIRGAAHRDTNGISPLGYPVDGEEGEEDS
DNEAFVNPSRATAASAPTAVKGEGVAADTPTSSSEQSRIMDSLRLSFMSR
RNSSEGSNVGGGSDSNNSAGVASDNGTGGEVGTGTRETAAAAGEEDTATE
SEAKRAAGEGGGGDDVALLVDSKAATRSSPLGVIGDGRRGLRSRSSSSSM
SVPTEETRTHWEDEQPAQSCAFQ*
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mRNA from alignment at L-elsbetiae_contig630:8428..11404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig630.14936.1 ID=mRNA_L-elsbetiae_contig630.14936.1|Name=mRNA_L-elsbetiae_contig630.14936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2977bp|location=Sequence derived from alignment at L-elsbetiae_contig630:8428..11404+ (Laminarionema elsbetiae ELsaHSoW15)
TCATGGCGTTTTCGGGGTGGGGCGGGGGCCACTCGTGCGTGGGGCGGATA
GTGCTCAAGGGGAGTACGGTGGAGGACGCCCCCGAGAAAGCTTCCGACGG
GGCTCCTTTCGCGTTCTGCGTCAGAGCATCTTACAGGTGAGTTTCCTTTC
TCGGAGGGTAGACAAGCAGTAGTTTTTTCGCGGGGAGGCTAATTTGTTTT
CTGTTCAGTGGCGGGACGAGAGTGCTGCCCGTGCCATGTCCGGCTGTATT
TAGTTGGTCGTAAAACGGGCCGTCGGGAAAGCGGTCAAGTGCGGGTGGTA
CATATTATGCAGGGATATTCACGGGTCAGGCGGATTTGAAATCTGACGGG
TCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCAAAGCGCTTGACCCGTTT
GACGGGTTGGGTCGGATCAGTGACCCGGGATGGAAAAATCTGACGGGTCG
GGTTGGGTCAGCTGACCTGGCCATGACCTGTCACGATCCGTCAGATTGAC
CCGACCCGCGAACATCCTTGATATTATGCATGTACCCCTGTTTTTTTCTT
TCGGGTGGTTGATGCACACTGACAGCTTAAGCGAGGAGAGGGCACTCCGC
CTACGCCTGTGTATTGTAAAGTATCCCAATTTTACAGGGATGTTCACGGG
TCTGGCCAATCTGACGGATCGTGACAGGTCATGGCCAGGTCAGCTGACCC
GACCCAACCCGTCAGACTTTTCTATCCCGGGTCACTGATCCGACCCGACC
CGACCCGTCAAATTGGTCACTTGATCCGACCCGACCAATCAGATTTTCCA
TCCGATCCGTCAAACGGGTCAAGCGTTTTGACCCGACCCGACCCGATCCG
TCAGATTTCAAATCCTCCTGATTCGTGAAGATCCCTTCAATTTTGGCGCC
GGTCGCTCGGTGCTTTATATTTCGCCAACACATGTTTTTCATATATTGCG
GCGCATAAGGTTAATGAAACATGTACCCCCACCCCCCCTCCCTCCTGGGT
GCGCGACTGTTTTGTGGACGATTCCCGTGGAGAGTACACAACATGGGCCA
AAAATCACCGACATCATCGCAAATTCTCAGAAAGAAGGCGTCGGGTTTAC
CCCTCCGCATGCCATTGTGCTACGAGTCGCGTGATGACCCCGCCCTCTCC
GCTCCGTCCCGCCGCATGCTGGCGTGCGACCTTACCTTTACGATAAACCA
TGGCCCGAATCAATCGTGCAGCGCCGAGGACGACAAAAGCCCCGGGCAGG
CATGGACGCTTCAAGCAAGCAACCGCCAGGAAAAGTGCAGGTGCGATTGA
TCTGCATTTGCTTACGTGCTACATACGTACCAGTACGTGACAAAAATCAC
GCACGCACCCCGTACATTGTTTGAACAAGGTCGTGTGATCTCTCAGTCGT
TGGGGGGGGCGTACGTAGACCGAGTTGCAGACTCAGGCGTTGTAATCGGT
CTGGCCTCCCCACTCCCCCGCTGATGGCCGTCGCCCCACCTCGCTTTATC
CCTCGTGCCCCTGTCCTCCAATCTCTCACCCCGAAATCCGTGACCCCACG
TCCATACCATCGCTCCCGCCACCATCACAGACGGTTGGAAGCTACTGTAT
ACATTTCGTTTGCAATACGAGACATAGTTTTGCTTGGTCCACCCCCCATT
GTCTAACCCCCCCCTCCCCCCTTCGGCTGCCGCCGTTTCAACTCGCGCCC
CCAAAGATGGGTTAACGCTATCCGAGGAGCCGCACACAGGGACACAAACG
GTATTTCGCCCCTGGGCTACCCTGTCGACGGAGAAGAAGGAGAAGAAGAC
AGCGATAATGAGGCCTTCGTTAACCCGTCTCGCGCTACGGCGGCGTCAGC
ACCAACAGCAGTGAAGGGAGAAGGGGTGGCCGCGGACACCCCGACCTCCT
CTTCTGAGCAGAGTCGCATCATGGACTCCCTCCGTTTGTCGTTTATGTCA
AGGCGAAACAGCAGCGAAGGCAGCAATGTCGGTGGCGGGAGCGATAGCAA
TAATTCTGCCGGCGTTGCCTCGGACAACGGCACAGGAGGAGAGGTGGGAA
CAGGCACGAGGGAGACAGCCGCTGCTGCCGGCGAAGAGGACACGGCGACA
GAATCGGAGGCGAAACGTGCCGCCGGGGAGGGGGGGGGAGGCGATGATGT
CGCCCTTCTCGTGGACTCCAAGGCGGCTACTCGAAGTTCACCACTGGGTG
TTATCGGGGATGGCCGCCGAGGCTTGCGATCGCGGTCGTCGTCGAGCTCC
ATGAGCGTTCCAACGGAGGAAACGCGGACGCACTGGGAAGATGAGCAGCC
TGCCCAAAGTTGTGCCTTCCAGTAGGATGTTGTCCGTGCACGCTAGACTT
GCTTCCCAACCGCCGTGCATAACGTACATGCATAGGATCATGAATCTGCT
TCCTGCCGTTGGTAATAATCTATGTAGCCGAGTTCACGAGAGAGTCGGGT
CGGGAGAGGGTTAAACGAGCATAGAGGCCGGGGGGGGGCAAGAGGCGCCA
ATGTTGTGTATCTACTTAGGTTCGGTTTCCCTGTTGACCCGGTCGTGTGG
GGGGCATATCGTTCCTTCCCGATACTAATGCGCAAATTACGAGCACGACA
TCATCGATGTTCACTGCACGACTGTACTCTACCTACGTATGTACACTATG
TATAGTATGCACTCTTGCGGTAGGTTGGTACAGTAGATATACATACATCT
GTATTAAGTCTTTAGTCTAGACTATTAGTCTAGTCCTCCAGTGGGTGTAT
CTACAGTGTTACCGCGTTTTTGCTTTTTTGCTTCGGCTCTGGTCTGAAGA
TTGGCTCTTGGTTCTTGCCTTGTCATGACATGTATACAGCAAGAGCATCA
TTCAATAATGTCTCGCCAAAGGATTTTTTTCCCGTTGAATTACTTACGTG
CCTGGACCAAAGGTGTGTTGCTACGGCATCTCTCGCCTCTGGCCGTCCAG
TTTTTGCTTCGGTGCTTCACCATTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig630:8428..11404+

>mRNA_L-elsbetiae_contig630.14936.1 ID=mRNA_L-elsbetiae_contig630.14936.1|Name=mRNA_L-elsbetiae_contig630.14936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1644bp|location=Sequence derived from alignment at L-elsbetiae_contig630:8428..11404+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTTTCGGGGTGGGGCGGGGGCCACTCGTGCGTGGGGCGGATAGT
GCTCAAGGGGAGTACGGTGGAGGACGCCCCCGAGAAAGCTTCCGACGGGG
CTCCTTTCGCGTTCTGCGTCAGAGCATCTTACAGATGGCGTTTTCGGGGT
GGGGCGGGGGCCACTCGTGCGTGGGGCGGATAGTGCTCAAGGGGAGTACG
GTGGAGGACGCCCCCGAGAAAGCTTCCGACGGGGCTCCTTTCGCGTTCTG
CGTCAGAGCATCTTACAGCGCCGAGGACGACAAAAGCCCCGGGCAGGCAT
GGACGCTTCAAGCAAGCAACCGCCAGGAAAAGTGCAGCGCCGAGGACGAC
AAAAGCCCCGGGCAGGCATGGACGCTTCAAGCAAGCAACCGCCAGGAAAA
GTGCAGATGGGTTAACGCTATCCGAGGAGCCGCACACAGGGACACAAACG
GTATTTCGCCCCTGGGCTACCCTGTCGACGGAGAAGAAGGAGAAGAAGAC
AGCGATAATGAGGCCTTCGTTAACCCGTCTCGCGCTACGGCGGCGTCAGC
ACCAACAGCAGTGAAGGGAGAAGGGGTGGCCGCGGACACCCCGACCTCCT
CTTCTGAGCAGAGTCGCATCATGGACTCCCTCCGTTTGTCGTTTATGTCA
AGGCGAAACAGCAGCGAAGGCAGCAATGTCGGTGGCGGGAGCGATAGCAA
TAATTCTGCCGGCGTTGCCTCGGACAACGGCACAGGAGGAGAGGTGGGAA
CAGGCACGAGGGAGACAGCCGCTGCTGCCGGCGAAGAGGACACGGCGACA
GAATCGGAGGCGAAACGTGCCGCCGGGGAGGGGGGGGGAGGCGATGATGT
CGCCCTTCTCGTGGACTCCAAGGCGGCTACTCGAAGTTCACCACTGGGTG
TTATCGGGGATGGCCGCCGAGGCTTGCGATCGCGGTCGTCGTCGAGCTCC
ATGAGCGTTCCAACGGAGGAAACGCGGACGCACTGGGAAGATGAGCAGCC
TGCCCAAAGTTGTGCCTTCCAGTAGATGGGTTAACGCTATCCGAGGAGCC
GCACACAGGGACACAAACGGTATTTCGCCCCTGGGCTACCCTGTCGACGG
AGAAGAAGGAGAAGAAGACAGCGATAATGAGGCCTTCGTTAACCCGTCTC
GCGCTACGGCGGCGTCAGCACCAACAGCAGTGAAGGGAGAAGGGGTGGCC
GCGGACACCCCGACCTCCTCTTCTGAGCAGAGTCGCATCATGGACTCCCT
CCGTTTGTCGTTTATGTCAAGGCGAAACAGCAGCGAAGGCAGCAATGTCG
GTGGCGGGAGCGATAGCAATAATTCTGCCGGCGTTGCCTCGGACAACGGC
ACAGGAGGAGAGGTGGGAACAGGCACGAGGGAGACAGCCGCTGCTGCCGG
CGAAGAGGACACGGCGACAGAATCGGAGGCGAAACGTGCCGCCGGGGAGG
GGGGGGGAGGCGATGATGTCGCCCTTCTCGTGGACTCCAAGGCGGCTACT
CGAAGTTCACCACTGGGTGTTATCGGGGATGGCCGCCGAGGCTTGCGATC
GCGGTCGTCGTCGAGCTCCATGAGCGTTCCAACGGAGGAAACGCGGACGC
ACTGGGAAGATGAGCAGCCTGCCCAAAGTTGTGCCTTCCAGTAG
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