mRNA_L-elsbetiae_contig63.14934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig63.14934.1
Unique NamemRNA_L-elsbetiae_contig63.14934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig63.14934.1 vs. uniprot
Match: A0A6H5KH49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH49_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 7.650e-68
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:  100 MAAAASKNEEKDVVGDQRNWEQRVTSELEVAKAWCDSWGPLYEGATTQQQQLASLEEKLKRMPGNQGTRTNYQLSFTGEAPFDEYPVGHTNQKPIRMEDVENLAKEMMAAQQK 438
            MAAAASKNEEK+VVGDQRNWEQRVTSELEVAKAWC++WGPLYEGATTQQQQL SLEEKLKRMPG+QGTRTNYQLSFTG APFDEYPVG TNQKP+RMEDVE LAKEMM AQQK
Sbjct:    1 MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQQLKSLEEKLKRMPGDQGTRTNYQLSFTGGAPFDEYPVGLTNQKPLRMEDVEELAKEMMVAQQK 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig63.14934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH49_9PHAE7.650e-6891.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig63contigL-elsbetiae_contig63:64542..65210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004190.1
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.464212-CDS-L-elsbetiae_contig63:64541..648221622816694.464212-CDS-L-elsbetiae_contig63:64541..64822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 64542..64822 +
1691683745.7319796-CDS-L-elsbetiae_contig63:64541..648221691683745.7319796-CDS-L-elsbetiae_contig63:64541..64822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 64542..64822 +
1622816694.4778988-CDS-L-elsbetiae_contig63:65053..652101622816694.4778988-CDS-L-elsbetiae_contig63:65053..65210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 65054..65210 +
1691683745.7443516-CDS-L-elsbetiae_contig63:65053..652101691683745.7443516-CDS-L-elsbetiae_contig63:65053..65210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 65054..65210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig63.14934.1prot_L-elsbetiae_contig63.14934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig63 64542..65210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig63.14934.1

>prot_L-elsbetiae_contig63.14934.1 ID=prot_L-elsbetiae_contig63.14934.1|Name=mRNA_L-elsbetiae_contig63.14934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
VRPANNAAACGCGAARKIHPSPARTHRRSCSSEMAAAASKNEEKDVVGDQ
RNWEQRVTSELEVAKAWCDSWGPLYEGATTQQQQLASLEEKLKRMPGNQG
TRTNYQLSFTGEAPFDEYPVGHTNQKPIRMEDVENLAKEMMAAQQK
back to top

mRNA from alignment at L-elsbetiae_contig63:64542..65210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig63.14934.1 ID=mRNA_L-elsbetiae_contig63.14934.1|Name=mRNA_L-elsbetiae_contig63.14934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=669bp|location=Sequence derived from alignment at L-elsbetiae_contig63:64542..65210+ (Laminarionema elsbetiae ELsaHSoW15)
GTACGTCCAGCGAACAACGCGGCTGCATGTGGCTGTGGCGCGGCGAGAAA
AATACATCCATCACCCGCGCGCACACACCGCAGGAGTTGCAGCAGCGAAA
TGGCGGCCGCCGCCTCCAAAAATGAAGAGAAAGATGTTGTAGGCGACCAG
AGAAACTGGGAGCAGAGAGTTACGTCGGAGCTCGAGGTCGCCAAGGCGTG
GTGCGACAGCTGGGGGCCGCTCTACGAGGGAGCCACGACGCAGCAGCAGC
AGCTGGCATCGCTGGAGGAGAAGCTCAAAAGGTGAGTGAGACCGAACGTG
TACGATGGGGCATTCACGATGGACCGACTTACATCCGCCGAGCACATTCG
TTGGTCGCAAATCCGAACGATAAACACGAGGGTTCTTCACGTAAATAGTC
AACATAACTGGAGTGGATTTTACCGTAGGTTTCCCTTTTCTACGCCCTCC
AGTGGGAAATAACAGCGTTAATTGACCGCTAACGTACACAACAACATTAC
GGAATATTTTAGGATGCCTGGAAACCAGGGAACACGGACCAACTACCAGC
TGTCGTTCACTGGAGAAGCGCCGTTCGACGAGTATCCCGTGGGCCACACG
AACCAGAAGCCCATAAGGATGGAGGATGTCGAAAATCTCGCCAAGGAAAT
GATGGCTGCACAACAAAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig63:64542..65210+

>mRNA_L-elsbetiae_contig63.14934.1 ID=mRNA_L-elsbetiae_contig63.14934.1|Name=mRNA_L-elsbetiae_contig63.14934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig63:64542..65210+ (Laminarionema elsbetiae ELsaHSoW15)
GTACGTCCAGCGAACAACGCGGCTGCATGTGGCTGTGGCGCGGCGAGAAA
AATACATCCATCACCCGCGCGCACACACCGCAGGAGTTGCAGCAGCGAAA
TGGCGGCCGCCGCCTCCAAAAATGAAGAGAAAGATGTTGTAGGCGACCAG
AGAAACTGGGAGCAGAGAGTTACGTCGGAGCTCGAGGTCGCCAAGGCGTG
GTGCGACAGCTGGGGGCCGCTCTACGAGGGAGCCACGACGCAGCAGCAGC
AGCTGGCATCGCTGGAGGAGAAGCTCAAAAGGTACGTCCAGCGAACAACG
CGGCTGCATGTGGCTGTGGCGCGGCGAGAAAAATACATCCATCACCCGCG
CGCACACACCGCAGGAGTTGCAGCAGCGAAATGGCGGCCGCCGCCTCCAA
AAATGAAGAGAAAGATGTTGTAGGCGACCAGAGAAACTGGGAGCAGAGAG
TTACGTCGGAGCTCGAGGTCGCCAAGGCGTGGTGCGACAGCTGGGGGCCG
CTCTACGAGGGAGCCACGACGCAGCAGCAGCAGCTGGCATCGCTGGAGGA
GAAGCTCAAAAGGATGCCTGGAAACCAGGGAACACGGACCAACTACCAGC
TGTCGTTCACTGGAGAAGCGCCGTTCGACGAGTATCCCGTGGGCCACACG
AACCAGAAGCCCATAAGGATGGAGGATGTCGAAAATCTCGCCAAGGAAAT
GATGGCTGCACAACAAAAGGATGCCTGGAAACCAGGGAACACGGACCAAC
TACCAGCTGTCGTTCACTGGAGAAGCGCCGTTCGACGAGTATCCCGTGGG
CCACACGAACCAGAAGCCCATAAGGATGGAGGATGTCGAAAATCTCGCCA
AGGAAATGATGGCTGCACAACAAAAG
back to top