mRNA_L-elsbetiae_contig6292.14920.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6292.14920.1
Unique NamemRNA_L-elsbetiae_contig6292.14920.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6292.14920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6292contigL-elsbetiae_contig6292:9421..10847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size357
Cds size123
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6292.14920.1prot_L-elsbetiae_contig6292.14920.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6292 9655..10847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.9313571-UTR-L-elsbetiae_contig6292:9420..96541622816692.9313571-UTR-L-elsbetiae_contig6292:9420..9654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6292 9421..9654 +
1691683744.71736-UTR-L-elsbetiae_contig6292:9420..96541691683744.71736-UTR-L-elsbetiae_contig6292:9420..9654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6292 9421..9654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.9429514-CDS-L-elsbetiae_contig6292:9654..96971622816692.9429514-CDS-L-elsbetiae_contig6292:9654..9697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6292 9655..9697 +
1691683744.7289422-CDS-L-elsbetiae_contig6292:9654..96971691683744.7289422-CDS-L-elsbetiae_contig6292:9654..9697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6292 9655..9697 +
1622816692.95719-CDS-L-elsbetiae_contig6292:10767..108471622816692.95719-CDS-L-elsbetiae_contig6292:10767..10847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6292 10768..10847 +
1691683744.7377777-CDS-L-elsbetiae_contig6292:10767..108471691683744.7377777-CDS-L-elsbetiae_contig6292:10767..10847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6292 10768..10847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6292.14920.1

>prot_L-elsbetiae_contig6292.14920.1 ID=prot_L-elsbetiae_contig6292.14920.1|Name=mRNA_L-elsbetiae_contig6292.14920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=41bp
MAGKEAAVFLVDCNASMGGHMELAREAVRVLMVQKMLQSKQ
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mRNA from alignment at L-elsbetiae_contig6292:9421..10847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6292.14920.1 ID=mRNA_L-elsbetiae_contig6292.14920.1|Name=mRNA_L-elsbetiae_contig6292.14920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1427bp|location=Sequence derived from alignment at L-elsbetiae_contig6292:9421..10847+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCAACCAGCAAACCGAGATAGAGGACCAGCGCGATACAGAACAGAGA
CGTGCCAAGGCAGGTGGTCCAAGAAACACCTCCCCATTTCCCGTGGAATA
GCTTTATTTCTCGAGCTGGATACGACAGCAGTGCCCAGCAGTTGCTAATT
CGTAAGCAAGAACACGCGAGGCAGAGACACCGACGCGCGCGTTTCAAAGC
TATTGCACAGGAGTCCGGCAGAACATCTGCAGGCATGGCGGGAAAGGAGG
CTGCCGTCTTCCTCGTAGACTGCAACGGTAAGCCCTGTCTGCCGACGGAG
CGCCGCTTTTTGGCGGCCCATTTTTTTAAATCCTCTATGAGTGTTTTTTT
GAGTGGGCACATGAACCGCATCATGCCGTTGCCATGATGCAGCGCTTTTT
GGGGCTAAATATCTATCTATAGGTACAGGATACTTTTTTTTGCGTGTGGA
GATTGCGCCTCTGCTTATTTTCAGAGCGGCGGTTCTGAGGTGTGCAGAGA
TAGGGCCAAGGATCGGCTGGGTAATCTTGCGGGTAGAATGTCACTCCTGC
TTTTTGTGAGAAAATTACCAGACAAAACGATAGAGCAGAGAGTCAGCTCT
ACAGCCCACCCTCCCCCCTCAAGCCGTACCTCTGCTGGCTGCTGGCTGCT
GGGAACGATATTCCCAACCTAGGCTATATCCAGGGCACAAACCCTACGCC
CTTCTTCGGCCGTAACAGCACAAGATTGCAAGATTTCGCACGGTAGATTT
CCCAGTTTTGTCCGGTAAATTCCATCCGAACACGTGTCCGATCCACGGCG
CCCCTATAGAGCCCGTGCAAAGATAAAGATACAGCCACGAACAACCCCCG
CTCTAGATTAACCCCAGCGTGTCGAAAACATCATCGGCGGGCGTGGTGTT
TTCCTGCGGCTGCGATGAAGGAGAGTGGCTGGTGTCAGCGCGCCGTACAC
AGCGTATAGAAGTAGACACCAGCCGGTAAGAAGTAGAATCGGACAGCCGG
TTAGTTACGCGACCCAGGGGCCCCGTATAAAAAACACGAGACCCCTCGGC
CGTATCTCTGCAACGAGGGCATCAATTTCCGTGAGCTCGTTTCGCCGGGC
TAGCCCTGAGCCCTACGAACAACTTTCGTGCAGAAAACTTTGGAATCTGA
GCAAGGCTTTGTGGCGCATTTTGCGAAACTAGACCCCAGAGGTCTCGCTT
TTTATACGGGACCCCCGGGGTCTCGTTTTACCGGCTCCCGGTTGCCGGCC
GACCCCGCCGCCCCTCTGCCTCCTCCACGTGTCCCCCCTCCACTGTGGAT
AAAACCATTCGAACGACCGCCGCGCTTCGCGTTTTTGCCGCGATCAGCCA
GCATGGGCGGCCACATGGAGCTCGCGAGGGAGGCGGTGCGGGTGCTGATG
GTCCAGAAGATGCTCCAGAGCAAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6292:9421..10847+

>mRNA_L-elsbetiae_contig6292.14920.1 ID=mRNA_L-elsbetiae_contig6292.14920.1|Name=mRNA_L-elsbetiae_contig6292.14920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig6292:9421..10847+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGAAAGGAGGCTGCCGTCTTCCTCGTAGACTGCAACGATGGCGG
GAAAGGAGGCTGCCGTCTTCCTCGTAGACTGCAACGCCAGCATGGGCGGC
CACATGGAGCTCGCGAGGGAGGCGGTGCGGGTGCTGATGGTCCAGAAGAT
GCTCCAGAGCAAGCAGCCAGCATGGGCGGCCACATGGAGCTCGCGAGGGA
GGCGGTGCGGGTGCTGATGGTCCAGAAGATGCTCCAGAGCAAGCAG
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