mRNA_L-elsbetiae_contig629.14915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig629.14915.1
Unique NamemRNA_L-elsbetiae_contig629.14915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig629.14915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig629contigL-elsbetiae_contig629:13874..14559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size686
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig629.14915.1prot_L-elsbetiae_contig629.14915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig629 13954..14457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.1637928-UTR-L-elsbetiae_contig629:13873..139531622816692.1637928-UTR-L-elsbetiae_contig629:13873..13953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig629 13874..13953 +
1691683744.0485902-UTR-L-elsbetiae_contig629:13873..139531691683744.0485902-UTR-L-elsbetiae_contig629:13873..13953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig629 13874..13953 +
1622816692.1923766-UTR-L-elsbetiae_contig629:14457..145591622816692.1923766-UTR-L-elsbetiae_contig629:14457..14559Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig629 14458..14559 +
1691683744.071992-UTR-L-elsbetiae_contig629:14457..145591691683744.071992-UTR-L-elsbetiae_contig629:14457..14559Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig629 14458..14559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816692.1817153-CDS-L-elsbetiae_contig629:13953..144571622816692.1817153-CDS-L-elsbetiae_contig629:13953..14457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig629 13954..14457 +
1691683744.06033-CDS-L-elsbetiae_contig629:13953..144571691683744.06033-CDS-L-elsbetiae_contig629:13953..14457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig629 13954..14457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig629.14915.1

>prot_L-elsbetiae_contig629.14915.1 ID=prot_L-elsbetiae_contig629.14915.1|Name=mRNA_L-elsbetiae_contig629.14915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MLLLLARCGSSARGPACCRALGFSLLPAENFSAPWLMVSSWEGGLSPPPP
PRPPSTAPPLPPTPRLAPKRAWGPFRYTSEYKHSLLSAAHAVSSGAKEAA
ATACRGIEGDRCRCCCLGPHLPSSQAPVARPAMLAAPRPPPPLLAAELTP
RNGRSASSTSCFRKLPG*
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mRNA from alignment at L-elsbetiae_contig629:13874..14559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig629.14915.1 ID=mRNA_L-elsbetiae_contig629.14915.1|Name=mRNA_L-elsbetiae_contig629.14915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=686bp|location=Sequence derived from alignment at L-elsbetiae_contig629:13874..14559+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTGCAGTATGGTGCGCTCTCGGCACCGCCGGCCCACTCGTCGTCAGAG
GCTACCGCTACCTTTCTTCTCCCGTCGGCGATGCTGCTGCTCCTCGCCCG
CTGCGGATCGTCGGCCCGCGGGCCGGCGTGCTGCCGCGCCCTCGGGTTCT
CCCTGCTGCCCGCCGAAAATTTCAGCGCGCCGTGGTTGATGGTGTCGTCC
TGGGAAGGGGGCCTGTCGCCACCCCCGCCGCCCCGGCCGCCATCCACGGC
GCCGCCGCTACCTCCAACCCCGCGGCTAGCTCCAAAGCGGGCGTGGGGGC
CGTTCCGGTACACCTCGGAGTACAAGCACTCGCTGCTCTCCGCAGCGCAC
GCGGTATCGTCCGGTGCGAAAGAGGCCGCGGCCACCGCTTGCCGGGGAAT
CGAAGGCGACCGTTGCCGCTGCTGTTGCCTCGGCCCACACCTGCCGTCGT
CGCAGGCGCCGGTTGCACGGCCGGCCATGCTGGCGGCACCGAGGCCGCCG
CCACCTCTCCTGGCCGCTGAGCTCACGCCAAGAAACGGCCGCTCCGCATC
CTCCACCTCCTGCTTTCGCAAACTGCCGGGGTAATCCCTCGCGCCGCCGC
GAGCGCCTTCCCTGTAGCCGATCCCCGCCCCAGCGGCATCGCTATGCCGA
TGATGGTGCTGCTGCCGTCGATACCGTCGTTCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig629:13874..14559+

>mRNA_L-elsbetiae_contig629.14915.1 ID=mRNA_L-elsbetiae_contig629.14915.1|Name=mRNA_L-elsbetiae_contig629.14915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig629:13874..14559+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGCTCCTCGCCCGCTGCGGATCGTCGGCCCGCGGGCCGGCGTG
CTGCCGCGCCCTCGGGTTCTCCCTGCTGCCCGCCGAAAATTTCAGCGCGC
CGTGGTTGATGGTGTCGTCCTGGGAAGGGGGCCTGTCGCCACCCCCGCCG
CCCCGGCCGCCATCCACGGCGCCGCCGCTACCTCCAACCCCGCGGCTAGC
TCCAAAGCGGGCGTGGGGGCCGTTCCGGTACACCTCGGAGTACAAGCACT
CGCTGCTCTCCGCAGCGCACGCGGTATCGTCCGGTGCGAAAGAGGCCGCG
GCCACCGCTTGCCGGGGAATCGAAGGCGACCGTTGCCGCTGCTGTTGCCT
CGGCCCACACCTGCCGTCGTCGCAGGCGCCGGTTGCACGGCCGGCCATGC
TGGCGGCACCGAGGCCGCCGCCACCTCTCCTGGCCGCTGAGCTCACGCCA
AGAAACGGCCGCTCCGCATCCTCCACCTCCTGCTTTCGCAAACTGCCGGG
GTAAATGCTGCTGCTCCTCGCCCGCTGCGGATCGTCGGCCCGCGGGCCGG
CGTGCTGCCGCGCCCTCGGGTTCTCCCTGCTGCCCGCCGAAAATTTCAGC
GCGCCGTGGTTGATGGTGTCGTCCTGGGAAGGGGGCCTGTCGCCACCCCC
GCCGCCCCGGCCGCCATCCACGGCGCCGCCGCTACCTCCAACCCCGCGGC
TAGCTCCAAAGCGGGCGTGGGGGCCGTTCCGGTACACCTCGGAGTACAAG
CACTCGCTGCTCTCCGCAGCGCACGCGGTATCGTCCGGTGCGAAAGAGGC
CGCGGCCACCGCTTGCCGGGGAATCGAAGGCGACCGTTGCCGCTGCTGTT
GCCTCGGCCCACACCTGCCGTCGTCGCAGGCGCCGGTTGCACGGCCGGCC
ATGCTGGCGGCACCGAGGCCGCCGCCACCTCTCCTGGCCGCTGAGCTCAC
GCCAAGAAACGGCCGCTCCGCATCCTCCACCTCCTGCTTTCGCAAACTGC
CGGGGTAA
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