mRNA_L-elsbetiae_contig6288.14913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI) HSP 1 Score: 365 bits (938), Expect = 3.800e-113 Identity = 309/578 (53.46%), Postives = 368/578 (63.67%), Query Frame = 1 Query: 31 LLGLLSSPAIDPVHAIKSQ-IKISLGGIKFQVSRFNDGRTTPSRIYFWQEDLTGSSYRFDLDGQLVYFKAGSEVYLDRMEHKNGSLTFES--KREKKDSGHXXXXXXXXXXXXXKGGINCADSMANVDAVCQYGIFTFCKNIDMSYLGPDGVHSAPCYTDDDSEDXXXXXXXXXXXXXXXXXXXXXXXXIAPTC-ENGFIGVQASNG-ACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDMGRSCAKAGKAPCYIDDDSEXXXXXXXXXXXXXXXXXXXXXXXXXI------APTC-ENGFIGVQASNG-ACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDTGRSCAKAGKAPCYIGDDSEDSXXXXXXXXXXXXXXXXXXXXXXXIAPTC-ENGFIGIQASNG-ACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYIDQDSKDSSDSSSDDXXXXXXXXXXXXXXXXXXXXSTLTCDN-GFIGVQHSNG-ACCHKGCGQCGDVGCSSFAETSGLDKNDCCATEIVDMGRPCTKAGKAPCYIDEDSEDSSD 1713 LLGLL + K Q I+I GG F++S F+DGR TP R+YFW LTGSSYRF LDG + YFKAG E Y DR + ++GS+ F S +KD +C+D + AVC G+ FC ID S LG DG S + DD XXXXXXXXXXXXXXXXXXXXXXXX TC +G +G+++SN CCD RCG CGGVGCS+FG+A GL + CCA+ I D G SCA G APC+ID D +XXXXXXXXXXXXXXXXXXXXXXXXX TC +G +G+++SN CCD RCG CGGVGCS+FG+A GL + CCA+ I D G SCA G APC+I D+E SXXXXXXXXXXXXXXXXX + TC +G +GI++SN ACCD CG CGG GCS+FGEA GL +CC+ +IV G C G APCYID D D S XXXXXXXXXXXXXXXXXX T C + G +G++ SN ACC CG CG VGCS F E GLD + CC+ EIVD G C+ G APC+++ D + D Sbjct: 10 LLGLLVPGSATMAETAKQQQIEIPEGGYTFKISHFDDGRATPYRVYFWDTFLTGSSYRFTLDGDVRYFKAGREQYKDREDKEDGSIKFTSTPSEPRKDLNKLEPKPTDFPTY------SCSDCTTTLQAVCHSGLPKFCSTIDRSCLGSDGTLSE---SSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFIDSDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGTATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFIDSDNESSXXXXXXXXXXXXXXXXXG------SATCASHGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVREGESCAATGMAPCYIDSD--DESXXXXXXXXXXXXXXXXXXXXXXXXGEGTAMCASYGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLDASYCCSNEIVDDGESCSATGMAPCFMESDDDSIED 570
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE) HSP 1 Score: 298 bits (762), Expect = 1.580e-88 Identity = 248/505 (49.11%), Postives = 302/505 (59.80%), Query Frame = 1 Query: 1 MKAFITAPVVLLGLLSSPAIDPVHAIKSQ-IKISLGGIKFQVSRFNDGRTTPSRIYFWQEDLTGSSYRFDLDGQLVYFKAGSEVYLDRMEHKNGSLTFES--KREKKDSGHXXXXXXXXXXXXXKGGINCADSMANVDAVCQYGIFTFCKNIDMSYLGPDGVHSA---------PCYTDDD-------------SEDXXXXXXXXXXXXXXXXXXXXXXXXIAPTC-ENGFIGVQASNG-ACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDMGRSCAKAGKAPCYIDDDSEXXXXXXXXXXXXXXXXXXXXXXXXXIAPTCEN-GFIGVQASNG-ACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDTGRSCAKAGKAPCYIGDDSE---DSXXXXXXXXXXXXXXXXXXXXXXXIAPTCENGFIGIQASNG-ACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYIDQDSKDSSDSSS 1416 M++F T LLGLL + K Q I+I GG F++S F+DGR TP R+YFW LTGSSYRF LDG + YFKAG E Y DR + ++GS+ F S +KD +C+D A + VC+ G+ FC +D S LG DG S C + + XXXXXXXXXXXXXXXXXXXXXXXX PTC +G +G+++SN CCD RCG CGGVGCS+FG+ GL + CC + I D G SCA G APCYID D +XXXXXXXXXXXXXXXXX + TC + G +G+++SN ACCD RCG CGGVGCS+FG+A GL ++CC+ +IV G SCA G APCYI D E +S XXXXXXXXXXXXXXXXX A G +GI++SN ACCD CG CGG GCS+FGEA GLD + CC+ EIVD G C+ G APC+I+ S S Sbjct: 1 MRSF-TIVSALLGLLVPGSATMAKTAKQQQIQIPEGGHTFKISHFDDGRATPYRVYFWDTFLTGSSYRFTLDGDVRYFKAGREQYKDREDKEDGSIKFTSTPSEPRKDLNKSEPKPTDFPTYR-----SCSDCTATLQVVCRSGLPKFCSTVDRSCLGRDGALSVGILCGKYERACASANSVCSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTCASHGVVGIESSNKKVCCDVRCGTCGGVGCSKFGEEYGLGESYCCTSTITDDGESCADTGMAPCYIDSDDDXXXXXXXXXXXXXXXXXGEG------STTCASYGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVKQGESCAATGMAPCYIDSDDEWDYESKDXXXXXXXXXXXXXXXXXSGEGTAMCASYGVVGIESSNQKACCDVRCGTCGGVGCSKFGEAYGLDASYCCSNEIVDDGESCSATGMAPCFIESGGAQSCSRDS 493
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 238 bits (606), Expect = 2.240e-62 Identity = 239/561 (42.60%), Postives = 294/561 (52.41%), Query Frame = 1 Query: 601 CENGFIGVQASNGACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDMGRSCAKAGKAPCYIDDDSEXXXXXXXXXXXXXXXXXXXXXXXXXIAPTCENGFIGVQASNGACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDTGRSCAKAGKAPCYIGDDSE-------------DSXXXXXXXXXXXXXXXXXXXXXXXIAPTCENGFIGIQASNGACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYIDQDSKDSSDSSSDDXXXXXXXXXXXXXXXXXXXXS---------TLTCDNGFIGVQHSNGACCHKGCGQCGDVGCSSFAETSGLDKNDCCATEIVDMGRPCTKAGKAPCYIDEDSEDSSDSGSXXXXXXXXXXXXXXXXXXIA-------PMCDNGFIGVQNSNGA-CCHKGCGQCGDVGCSSFAETAGLAKNDCCAAEIVDMGRPCTKAGKAPCYIDE------------------DSDDXXXXXXXXXXXXIAPMCDNGFIGVQNSNGACCDKGCGQCGDVGCSSF 2139 C NGF G+Q+ N ACC CG CGG C FG G D +CC ++IV+ G C+ A +APCYID+ TC NG G+Q N ACC CG CGG C FG G D +CC ++IV+ G C+ A APCYI D S XXXXXXXXXXXXXXXXXXXXXXX C NG GIQ S +CC CGECGGS C+ +G+ G D +CC + I + G C+ +APC +D + S + XXXXXXXXXXXXXXXXXXX T TC NG G+Q N ACC CG CG C F GL ++CC ++IV+ G PC+ A +APCYID+ + S XXXXXXXXXXXXXXX P C G G+++S+GA CC GC CG GCS+ CC+++I+ G C++ G+APC + + XXXXXXXXXXXX +C NG G+Q S +CC CG+CG C F Sbjct: 993 CSNGFPGIQSGN-ACCLAECGACGGSDCDEFGGGLGAD--NCCVSDIVEHGELCSIALEAPCYIDE-------------------------------TCSNGIPGIQTGN-ACCLAECGACGGSDCDEFGGGLGAD--NCCVSDIVEHGELCSIALAAPCYIDDSSPAPSPVAEPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQ-SGVSCCLAECGECGGSDCAEYGDGLGAD--NCCQSNIEEYGELCSIKLEAPCVVDDSAPAPSPVTMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTCSNGIPGIQSDN-ACCLAECGACGGSDCDEFG--GGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVG-MPDYGPESCCSSDILSTGASCSETGEAPCVLADVVLTPAPVAEPTXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQ-SGVSCCLADCGECGGSDCDEF 1508
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.440e-27 Identity = 71/183 (38.80%), Postives = 93/183 (50.82%), Query Frame = 1 Query: 895 CENGFIGVQASNG-ACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDTGRSCAKAGKAPCYI-GDDSEDSXXXXXXXXXXXXXXXXXXXXXXXIAPT-----------------CENGFIGIQASNG-ACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYID 1383 C NG G+++SNG ACC CG CGGVGCS G+ G +DCC +EIV+ G +CA G +PCYI GD+ D + + C NG G++++ G CC CG+CGG GC FGE DCC TEI+D G+PC++ G APCY+D Sbjct: 107 CSNGVYGIESSNGKACCALTCGSCGGVGCS--GRPGG--SYDCCESEIVEEGEACAATGASPCYIDGDEVLDPVVPSMSPVVPEETDMPSGFGGGSYSYSYDFVSWDGDSMDDQFMWCTNGVPGMESAGGEVCCPADCGQCGGVGCGEFGE-------DCCITEIMDYGQPCSEIGTAPCYLD 278
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.810e-22 Identity = 66/162 (40.74%), Postives = 85/162 (52.47%), Query Frame = 1 Query: 1 MKAFITAPVVLLGLLSSPAIDPVHAIKSQIKISLGGIKFQVSRFNDGRTTPSRIYFWQEDLTGSSYRFDLDGQLVYFKAGSEVYLDRMEHKNGSLTFESK-REKKDSGHXXXXXXXXXXXXXKGGINCADSMANVDAVCQYGIFTFCKNIDMSYLGPDGVHS 483 MK T VLLG LSS A A + +I+I GG F++S F+DGRTTP R++F E LTGSSYR DG + YFKAG+E+Y DRM + S+TF K E + G C + + A C G+ FC +D S LG DG+ S Sbjct: 1 MKLHTTTVGVLLGQLSSLA-TVAQAAQKKIEIPAGGYTFKLSLFDDGRTTPYRVFFADEYLTGSSYRLSADGHVQYFKAGAELYFDRMVQDDNSITFSKKPSESRKHGKGRPEPHDDYDFSSSEANFCTECTEAITATCYSGLPEFCTMVDRSILGNDGLQS 161
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.580e-20 Identity = 58/167 (34.73%), Postives = 69/167 (41.32%), Query Frame = 1 Query: 892 TCENGFIGVQASNGACCDKRCGQCGGVGCSRFGKAAGLDKFDCCATEIVDTGRSCAKAGKAPCYIGDDSEDSXXXXXXXXXXXXXXXXXXXXXXXIAPTCENGFIGIQASNGACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYIDQDS 1392 TC NG G++ + CC C QCGG GC+ G AAGL CC I +G C +APC IG TC NG GI + CC C +CGG+GC+ G AAGL CC I G C +APC I S Sbjct: 471 TCSNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGS-------------------------RPTTVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSSS 612
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8 Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1 Query: 1189 CENGFIGIQASNG-ACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYID 1383 C NG G++++ G CC CG CGG GC G A ++CC TEI+D G+PC+ G APCY+D Sbjct: 674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDERGAA-----DECCTTEIMDYGQPCSVTGTAPCYLD 734
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 3.010e-8 Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1 Query: 1189 CENGFIGIQASNG-ACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYID 1383 C NG G++++ G CC CG CGG GC G A ++CC TEI+D G+PC+ G APCY+D Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAA-----DECCTTEIMDYGQPCSVTGTAPCYLD 1237
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 3.300e-7 Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = 1 Query: 1186 TCENGFIGIQASNGACCDKGCGECGGSGCSRFGEAAGLDKNDCCATEIVDMGRPCTKAGKAPCYI 1380 TC NG GI + CC C +CGGSGC+ G AAGL CC + + GR C +APC I Sbjct: 526 TCSNGVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCII 590 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6288.14913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6288.14913.1 >prot_L-elsbetiae_contig6288.14913.1 ID=prot_L-elsbetiae_contig6288.14913.1|Name=mRNA_L-elsbetiae_contig6288.14913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=717bp MKAFITAPVVLLGLLSSPAIDPVHAIKSQIKISLGGIKFQVSRFNDGRTTback to top mRNA from alignment at L-elsbetiae_contig6288:326..6215+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6288.14913.1 ID=mRNA_L-elsbetiae_contig6288.14913.1|Name=mRNA_L-elsbetiae_contig6288.14913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5890bp|location=Sequence derived from alignment at L-elsbetiae_contig6288:326..6215+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6288:326..6215+ >mRNA_L-elsbetiae_contig6288.14913.1 ID=mRNA_L-elsbetiae_contig6288.14913.1|Name=mRNA_L-elsbetiae_contig6288.14913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4302bp|location=Sequence derived from alignment at L-elsbetiae_contig6288:326..6215+ (Laminarionema elsbetiae ELsaHSoW15)back to top |