mRNA_L-elsbetiae_contig6286.14910.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6286.14910.1
Unique NamemRNA_L-elsbetiae_contig6286.14910.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6286.14910.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 1.190e-125
Identity = 203/348 (58.33%), Postives = 243/348 (69.83%), Query Frame = 3 
Query:   12 MIDQDYAELLGRSPPTGDLLEWTFPASALANAFVSLLIGTPALCLALYVA--AGEGDHVSGSVEFRVPTLTRLSIRDTPIGEVYTAGMHLAAAMAIPLFWCVKLSHHQRLQARTGVTRYDLQAEDAVWWVKTAWVVGTLGATLLFAAASVPGDREGSSSSAQGVLHLVLSLLAAGGLIGQTACTAWALRKARRVFVVSEADLVAYRRKVVLASVAVVAALAAVSSVLLVECFADGACGVGYVKSGXXXXXXXXXXXXXXXXXXXXXXMVDFGAGGGDADVAHGAVARNG----TVHHRRDCGSEWCYSRSLMGLWEWLLLLVEAGFCIALRHDLAPATAGVGVESFVL 1037
            MIDQDYAELLGRSPP+G++LEWTFPA ALA+AFV LL+GTPALC  LY+   + E     G  E R+PTLT+L +R+ P+G  + AG+ LAA +A+PLFWCVKL+HHQRLQARTGV RYD++AE A+ WV  AW+ G LGA L++AAASVPG+ EG+S S QGV HLVL+  AA G++GQ  CTAWALRKAR VFVVS+ DLVAY+RK+ LAS A + A  AV SVL+VEC   G   +G+   G                          G GG D + A  AV         V   RDC +EWCYSRSL+GLWE+LLL VEAGFC+ALRHDLAPAT GVGVESFVL
Sbjct:    1 MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFHGGGAELRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGE-EGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAGAFVGGGGSSS-------------GVGGFDDETA--AVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6286.14910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE4_ECTSI1.190e-12558.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6286contigL-elsbetiae_contig6286:4228..7101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001590.1
Exons5
Model size1040
Cds size1029
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6286.14910.1prot_L-elsbetiae_contig6286.14910.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6286 4239..7101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.7787004-UTR-L-elsbetiae_contig6286:4227..42381622816691.7787004-UTR-L-elsbetiae_contig6286:4227..4238Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6286 4228..4238 +
1691683743.7520337-UTR-L-elsbetiae_contig6286:4227..42381691683743.7520337-UTR-L-elsbetiae_contig6286:4227..4238Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6286 4228..4238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.7887723-CDS-L-elsbetiae_contig6286:4238..44301622816691.7887723-CDS-L-elsbetiae_contig6286:4238..4430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 4239..4430 +
1691683743.7636013-CDS-L-elsbetiae_contig6286:4238..44301691683743.7636013-CDS-L-elsbetiae_contig6286:4238..4430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 4239..4430 +
1622816691.7993689-CDS-L-elsbetiae_contig6286:5301..54021622816691.7993689-CDS-L-elsbetiae_contig6286:5301..5402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 5302..5402 +
1691683743.7762432-CDS-L-elsbetiae_contig6286:5301..54021691683743.7762432-CDS-L-elsbetiae_contig6286:5301..5402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 5302..5402 +
1622816691.8141315-CDS-L-elsbetiae_contig6286:5654..59301622816691.8141315-CDS-L-elsbetiae_contig6286:5654..5930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 5655..5930 +
1691683743.7866244-CDS-L-elsbetiae_contig6286:5654..59301691683743.7866244-CDS-L-elsbetiae_contig6286:5654..5930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 5655..5930 +
1622816691.8251998-CDS-L-elsbetiae_contig6286:6377..66431622816691.8251998-CDS-L-elsbetiae_contig6286:6377..6643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 6378..6643 +
1691683743.7980886-CDS-L-elsbetiae_contig6286:6377..66431691683743.7980886-CDS-L-elsbetiae_contig6286:6377..6643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 6378..6643 +
1622816691.8383508-CDS-L-elsbetiae_contig6286:6907..71011622816691.8383508-CDS-L-elsbetiae_contig6286:6907..7101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 6908..7101 +
1691683743.807018-CDS-L-elsbetiae_contig6286:6907..71011691683743.807018-CDS-L-elsbetiae_contig6286:6907..7101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 6908..7101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6286.14910.1

>prot_L-elsbetiae_contig6286.14910.1 ID=prot_L-elsbetiae_contig6286.14910.1|Name=mRNA_L-elsbetiae_contig6286.14910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=343bp
MIDQDYAELLGRSPPTGDLLEWTFPASALANAFVSLLIGTPALCLALYVA
AGEGDHVSGSVEFRVPTLTRLSIRDTPIGEVYTAGMHLAAAMAIPLFWCV
KLSHHQRLQARTGVTRYDLQAEDAVWWVKTAWVVGTLGATLLFAAASVPG
DREGSSSSAQGVLHLVLSLLAAGGLIGQTACTAWALRKARRVFVVSEADL
VAYRRKVVLASVAVVAALAAVSSVLLVECFADGACGVGYVKSGGGSSIIS
NGFGGGGGGRGGGGGMVDFGAGGGDADVAHGAVARNGTVHHRRDCGSEWC
YSRSLMGLWEWLLLLVEAGFCIALRHDLAPATAGVGVESFVL*
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mRNA from alignment at L-elsbetiae_contig6286:4228..7101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6286.14910.1 ID=mRNA_L-elsbetiae_contig6286.14910.1|Name=mRNA_L-elsbetiae_contig6286.14910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2874bp|location=Sequence derived from alignment at L-elsbetiae_contig6286:4228..7101+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGACAGGGATGATTGATCAGGACTATGCTGAGCTCCTGGGTCGCTCC
CCCCCCACCGGAGACTTGTTGGAGTGGACGTTTCCTGCCTCTGCGTTGGC
AAATGCTTTCGTTTCGCTGCTGATAGGAACCCCTGCGCTGTGCTTGGCGC
TTTACGTTGCGGCCGGGGAGGGCGATCATGTCAGCGGCAGTGTTGAGTTC
CGGGTGAGCGTAACCGCCAGCTCGAAGAGCGATCCTGATGCTGTAGATGG
TGGAAGCATTCCTGCGGCGTGCGTAGTGCTCAAATGTATGTACATACATA
CATACGAGGACGAAAGATCGGGGAGGGAGAGAGATACCGCAGGGCGCGAG
AGGAGAACGTTCGCCACAGCAGCAGCAGCACTAGAAGTCTACAGCATTAG
TAACTTCCTCGGGTATCCATCGCCGCCCTTATTGTTTGGTGCGGATTGCG
AGTAGTTCATGCACAACTAGGTTGGAAACAGGGACGCAAAAACACGCGCG
GGACACGCATCGACACCGTCTTGTGTATTTCACTTACAACTCTGCTGTTC
ATGAACTGCCGCTCATGAGCCCATGAGCCCTACTTTGCTGCTGTCCACCT
GACTAGAAAGGATGGAGGACCATTGCATCGCATGAAGGCATAAACTGACA
CGGTTGCCGACCTTCATGCGCAGTGTTGAAGCCCAGCCATCCCTTATCTC
GTTTGTCACGCCCTGTAGATCTTTCCCTCCTCCATATGTATGTATGTACA
GGTATTTTTACCGCAGGTGACTTAAGATAACACCCCCCCTCTGGACCGAG
TTTAAGAGCTCCATTACTCCGTAACGAATGGTGCCGGCACCAAACGACAC
ATTTCCGGACAGCCCTCGGCTAGGTCTTTCCAACCCCACCCCCTTTCGGC
ACTGGCACTCTTCTTGCTGAGGAGGAACCGAGCTTGAAAAACTGCCCAGG
AGGGGGAATGGTTTCTTGTGTCACTCACGGCGGTACTGCTGTATACTGTT
GTACATACCCTGCTGGGTTTGCATTGATGGCAAGTATCGTATCCGCGTGC
CATGCACTCTCTCTCTCATCGCAGGTCCCCACCCTGACGCGGCTCAGCAT
CCGCGACACCCCCATCGGAGAAGTCTACACCGCGGGCATGCACCTGGCTG
CCGCGATGGCTATCCCCCTCTTCTGGTGAGCCTTCTCGCGCGGGGAAACC
GAGCTGCCGTTTGGAGCGTTAGAGCCAGCCATGCCTTTCGGGGGGCGCCT
GGCTGATGTGTTGCGCCAATGTTTTCATGGGCGCTAACTCTTTGTCTTAT
GCAGTCAGTATCTGGGGCGCGCGCGCGCACGCACGCACACACACACACAC
ACACACACACACACACACACACACGAACTGACACACGTGCACACCGATTA
CCCCGTCCCCGACGTCGAAAAACCCAGGTGCGTCAAGCTGTCCCACCACC
AGCGGCTGCAGGCCCGGACGGGGGTGACGCGCTACGACCTGCAGGCGGAG
GACGCCGTGTGGTGGGTCAAGACCGCCTGGGTCGTCGGCACGCTGGGCGC
CACCCTCCTCTTCGCCGCCGCCAGCGTGCCGGGGGACAGGGAGGGCTCGT
CCTCCTCGGCGCAGGGCGTCCTGCACCTGGTGCTGTCTTTGCTGGCGGCG
GGCGGGCTGATCGGCCAGACGGCGTGCACGGCGTGGGCGCTCCGGAAGGC
CAGGTGGGGGTGGTGGTGGTGGTGGTGGTGGTGAGTCGGGAGGCAAGGGG
GGGGGTCGTCGATTTTGTCGGCTCTTACTGCTGCGCGTTGTTGGTTTCGT
TGGTAGATGTTGGTGCTGTGTTTGTTGGGGTATTGGTGTGTGCTGGGTAC
TTGCTGGTGGAGTTTTCTTCTTTTCTGACCGGGCGACGGAGGAAATTGTT
TCTGATCCGGAGCGGAAAGCATAAATGATATAAATTGAAACAAACCACTC
GATTACAACGCCACTGTGTTTACCCTCACAAAAGGTATACGACTGGAGTT
AGAAATACACATGGTTCATGGTTGGGTCTGAAAAACTAGCGCGCGGGGTG
GGGCAGTCACAAGTCGAACGAACTACCCCGCTCTTGGGGTCCATCTTCTT
CTCTCCCCTTCTAATGGATGCGGTGTTTGTTTTTGTGCGTTTTGTGACAG
GCGAGTGTTCGTGGTGTCCGAGGCTGACCTGGTGGCCTACCGCCGGAAGG
TTGTCCTGGCGTCGGTGGCGGTTGTGGCCGCGCTGGCCGCCGTCTCCTCG
GTGCTGCTGGTGGAGTGCTTTGCGGACGGCGCGTGTGGAGTCGGGTACGT
TAAGAGCGGCGGCGGCAGCAGCATCATCAGCAACGGTTTTGGCGGCGGCG
GCGGCGGCCGCGGAGGTGGCGGTGGCATGGTCGATTTCGGCGCGGGCGGA
GGCGACGCGGACGTAGGTGACAGCAGTCTCATCTCGGACGAGCGCAGTGC
CGTGATTTTTGGCGACGGCGCCTTTCCCGCCGTCGGTGGCGGTAGCGGGA
GTAAAACCCGCGGGGATTTGTACGAGGAGGAGGAGGAGGAGGAGGAGGGT
GGTGCGAGCTTCTTAACTCCCACCGCTTCCGCCGATGGCGGTCTGTCCGC
CGAAGAGTCGATGGCCGTCTCGGCGGCGGCCGGGGTGGTAGCGGCCGCGG
CAACGGCGGTGGCGGTGCCGCCAGAAGCAGCACACGGTGCGGTTGCCAGG
AACGGCACCGTCCACCACAGGCGGGACTGCGGCTCCGAGTGGTGCTACTC
CAGGAGCCTCATGGGCTTGTGGGAGTGGCTGCTGCTGCTGGTTGAGGCCG
GGTTCTGCATCGCGCTGAGGCACGACCTCGCGCCCGCTACGGCCGGCGTC
GGAGTGGAGAGCTTCGTGCTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6286:4228..7101+

>mRNA_L-elsbetiae_contig6286.14910.1 ID=mRNA_L-elsbetiae_contig6286.14910.1|Name=mRNA_L-elsbetiae_contig6286.14910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2058bp|location=Sequence derived from alignment at L-elsbetiae_contig6286:4228..7101+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGATCAGGACTATGCTGAGCTCCTGGGTCGCTCCCCCCCCACCGG
AGACTTGTTGGAGTGGACGTTTCCTGCCTCTGCGTTGGCAAATGCTTTCG
TTTCGCTGCTGATAGGAACCCCTGCGCTGTGCTTGGCGCTTTACGTTGCG
GCCGGGGAGGGCGATCATGTCAGCGGCAGTGTTGAGTTCCGGATGATTGA
TCAGGACTATGCTGAGCTCCTGGGTCGCTCCCCCCCCACCGGAGACTTGT
TGGAGTGGACGTTTCCTGCCTCTGCGTTGGCAAATGCTTTCGTTTCGCTG
CTGATAGGAACCCCTGCGCTGTGCTTGGCGCTTTACGTTGCGGCCGGGGA
GGGCGATCATGTCAGCGGCAGTGTTGAGTTCCGGGTCCCCACCCTGACGC
GGCTCAGCATCCGCGACACCCCCATCGGAGAAGTCTACACCGCGGGCATG
CACCTGGCTGCCGCGATGGCTATCCCCCTCTTCTGGTCCCCACCCTGACG
CGGCTCAGCATCCGCGACACCCCCATCGGAGAAGTCTACACCGCGGGCAT
GCACCTGGCTGCCGCGATGGCTATCCCCCTCTTCTGGTGCGTCAAGCTGT
CCCACCACCAGCGGCTGCAGGCCCGGACGGGGGTGACGCGCTACGACCTG
CAGGCGGAGGACGCCGTGTGGTGGGTCAAGACCGCCTGGGTCGTCGGCAC
GCTGGGCGCCACCCTCCTCTTCGCCGCCGCCAGCGTGCCGGGGGACAGGG
AGGGCTCGTCCTCCTCGGCGCAGGGCGTCCTGCACCTGGTGCTGTCTTTG
CTGGCGGCGGGCGGGCTGATCGGCCAGACGGCGTGCACGGCGTGGGCGCT
CCGGAAGGCCAGGTGCGTCAAGCTGTCCCACCACCAGCGGCTGCAGGCCC
GGACGGGGGTGACGCGCTACGACCTGCAGGCGGAGGACGCCGTGTGGTGG
GTCAAGACCGCCTGGGTCGTCGGCACGCTGGGCGCCACCCTCCTCTTCGC
CGCCGCCAGCGTGCCGGGGGACAGGGAGGGCTCGTCCTCCTCGGCGCAGG
GCGTCCTGCACCTGGTGCTGTCTTTGCTGGCGGCGGGCGGGCTGATCGGC
CAGACGGCGTGCACGGCGTGGGCGCTCCGGAAGGCCAGGCGAGTGTTCGT
GGTGTCCGAGGCTGACCTGGTGGCCTACCGCCGGAAGGTTGTCCTGGCGT
CGGTGGCGGTTGTGGCCGCGCTGGCCGCCGTCTCCTCGGTGCTGCTGGTG
GAGTGCTTTGCGGACGGCGCGTGTGGAGTCGGGTACGTTAAGAGCGGCGG
CGGCAGCAGCATCATCAGCAACGGTTTTGGCGGCGGCGGCGGCGGCCGCG
GAGGTGGCGGTGGCATGGTCGATTTCGGCGCGGGCGGAGGCGACGCGGAC
GTAGGCGAGTGTTCGTGGTGTCCGAGGCTGACCTGGTGGCCTACCGCCGG
AAGGTTGTCCTGGCGTCGGTGGCGGTTGTGGCCGCGCTGGCCGCCGTCTC
CTCGGTGCTGCTGGTGGAGTGCTTTGCGGACGGCGCGTGTGGAGTCGGGT
ACGTTAAGAGCGGCGGCGGCAGCAGCATCATCAGCAACGGTTTTGGCGGC
GGCGGCGGCGGCCGCGGAGGTGGCGGTGGCATGGTCGATTTCGGCGCGGG
CGGAGGCGACGCGGACGTAGCACACGGTGCGGTTGCCAGGAACGGCACCG
TCCACCACAGGCGGGACTGCGGCTCCGAGTGGTGCTACTCCAGGAGCCTC
ATGGGCTTGTGGGAGTGGCTGCTGCTGCTGGTTGAGGCCGGGTTCTGCAT
CGCGCTGAGGCACGACCTCGCGCCCGCTACGGCCGGCGTCGGAGTGGAGA
GCTTCGTGCTGTGACACACGGTGCGGTTGCCAGGAACGGCACCGTCCACC
ACAGGCGGGACTGCGGCTCCGAGTGGTGCTACTCCAGGAGCCTCATGGGC
TTGTGGGAGTGGCTGCTGCTGCTGGTTGAGGCCGGGTTCTGCATCGCGCT
GAGGCACGACCTCGCGCCCGCTACGGCCGGCGTCGGAGTGGAGAGCTTCG
TGCTGTGA
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