mRNA_L-elsbetiae_contig6282.14902.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6282.14902.1
Unique NamemRNA_L-elsbetiae_contig6282.14902.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6282.14902.1 vs. uniprot
Match: D7FR58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR58_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.960e-59
Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 2 
Query: 1319 EISCVNFLVQSRTHRRVSSSQASRRTRGPSTRSLPDSMQMLCTRNEDIIVAVFFDVKTCVTTSTENQGRLREFLHQVKNSFSETFAGRVVSLRPTLKECADGHANDGVLRSVQDEFVPFKESVDQIRN 1702
            EISCVNFLV+SRTHRRVSSSQA+RRTRGPS RSLPDSMQMLCTRNEDIIVAVFFDVKTCVTTSTENQG +R+F++QVKNSF ETFAGRV SLRPTLK+CADG  ND  LRSVQDEF+ F   VDQ+R+
Sbjct:   58 EISCVNFLVKSRTHRRVSSSQATRRTRGPSARSLPDSMQMLCTRNEDIIVAVFFDVKTCVTTSTENQGSVRQFINQVKNSFCETFAGRVASLRPTLKQCADGDMNDAALRSVQDEFLRFGPDVDQMRH 185
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BLAST of mRNA_L-elsbetiae_contig6282.14902.1 vs. uniprot
Match: A0A6H5JLG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG3_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 9.370e-36
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 2 
Query: 1430 MQMLCTRNEDIIVAVFFDVKTCVTTSTENQGRLREFLHQ--VKNSFSETFAGRVVSLRPTLKECADGHANDGVLRSVQDEFVPFKESVDQIRN 1702
            MQMLCTRNEDIIVAVFFDVKTCVTTSTENQG +R+FL+Q  VKNSF ETFA RV SLRP LK+CADG  ND  LRSVQDEF+ F   VDQ+R+
Sbjct:    1 MQMLCTRNEDIIVAVFFDVKTCVTTSTENQGSVRQFLNQASVKNSFCETFAERVASLRPILKQCADGDMNDAALRSVQDEFLRFGPDVDQMRH 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6282.14902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR58_ECTSI1.960e-5982.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLG3_9PHAE9.370e-3676.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6282contigL-elsbetiae_contig6282:5355..11045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003410.1
Exons4
Model size2885
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6282.14902.1prot_L-elsbetiae_contig6282.14902.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6282 7254..9883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.199021-UTR-L-elsbetiae_contig6282:5354..67501622816691.199021-UTR-L-elsbetiae_contig6282:5354..6750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 5355..6750 +
1691683743.3743055-UTR-L-elsbetiae_contig6282:5354..67501691683743.3743055-UTR-L-elsbetiae_contig6282:5354..6750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 5355..6750 +
1622816691.2116625-UTR-L-elsbetiae_contig6282:7220..72531622816691.2116625-UTR-L-elsbetiae_contig6282:7220..7253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 7221..7253 +
1691683743.3893414-UTR-L-elsbetiae_contig6282:7220..72531691683743.3893414-UTR-L-elsbetiae_contig6282:7220..7253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 7221..7253 +
1622816691.2569509-UTR-L-elsbetiae_contig6282:9883..110451622816691.2569509-UTR-L-elsbetiae_contig6282:9883..11045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 9884..11045 +
1691683743.4301674-UTR-L-elsbetiae_contig6282:9883..110451691683743.4301674-UTR-L-elsbetiae_contig6282:9883..11045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 9884..11045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.222062-CDS-L-elsbetiae_contig6282:7253..73701622816691.222062-CDS-L-elsbetiae_contig6282:7253..7370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 7254..7370 +
1691683743.4039-CDS-L-elsbetiae_contig6282:7253..73701691683743.4039-CDS-L-elsbetiae_contig6282:7253..7370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 7254..7370 +
1622816691.233838-CDS-L-elsbetiae_contig6282:8045..81321622816691.233838-CDS-L-elsbetiae_contig6282:8045..8132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 8046..8132 +
1691683743.4123485-CDS-L-elsbetiae_contig6282:8045..81321691683743.4123485-CDS-L-elsbetiae_contig6282:8045..8132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 8046..8132 +
1622816691.2449186-CDS-L-elsbetiae_contig6282:9793..98831622816691.2449186-CDS-L-elsbetiae_contig6282:9793..9883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 9794..9883 +
1691683743.4214592-CDS-L-elsbetiae_contig6282:9793..98831691683743.4214592-CDS-L-elsbetiae_contig6282:9793..9883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 9794..9883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6282.14902.1

>prot_L-elsbetiae_contig6282.14902.1 ID=prot_L-elsbetiae_contig6282.14902.1|Name=mRNA_L-elsbetiae_contig6282.14902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MQMLCTRNEDIIVAVFFDVKTCVTTSTENQGRLREFLHQVKNSFSETFAG
RVVSLRPTLKECADGHANDGVLRSVQDEFVPFKESVDQIRNRWTMDS*
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mRNA from alignment at L-elsbetiae_contig6282:5355..11045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6282.14902.1 ID=mRNA_L-elsbetiae_contig6282.14902.1|Name=mRNA_L-elsbetiae_contig6282.14902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5691bp|location=Sequence derived from alignment at L-elsbetiae_contig6282:5355..11045+ (Laminarionema elsbetiae ELsaHSoW15)
ATACACGTAGCGAAAATTGCAGTCCAAAGGGGATCGGCTCGCTGGCTGTT
TTGCTGTGATCGCATGCATGCTGTCGAAACCGGGCGTTTTCCTCGTGTTG
CCTTTGTTTTTTACTGAGGCAATGTTTTTTCACTCTTTACTCCTGGCAAC
CCAGTACACGTTTAATGCTTCTCGTAACAGCTCGCGCGGCGCTGACACCT
CTTTTTGTGAACCGAACTTACGTTGCGTGTGTTCTCTTGTATGGGGGACC
TTCATGCGATTATTCAACGGAACATTCAAAGGGCCCAGAAAAATCAACAC
AACGCTATGAAGCACACAAAGAGATTCTCGATTTTATTTACAACTGGAGC
AGCTGTGTTTGATTCCTTGGGTTGGGTGTAGAATTCAGCTCAAGCGATGA
GCTTGCTTGAAAAAACATTTTCTCAGGAACGGAGGGAGGTCGACTTGAAC
GTTTAGTGTTACACACCTCGGACAGTCGCCCCGAGTTAAGTTGGTACCCT
CGAAAACCTGCTGACCTGTAGATGAATTGATGGCAAACTATTGTATTGTT
CCCGATAACCAATCTGAGCCGGAATCTACGGCAAAATTTAGACCAAAAAT
CTGGTGTTACGGCAAGCTGGTCCGACATTCGTTCTTCGACACCAAGTACT
ACAGATGTTTGGATTCTTTATATTCAATGGGGGTGCTTAGTATTTAATGC
GATCGTATATTGATGCTTAACGCAGAGAACTGAAAAGCCCGAGAAACATG
TGCTGCCCTGAGTTGCTTACAAGCGGTCTGGCTCTCACCTTCACCCGGCC
CTCAGCTATTTGCAACAAATCAAAGTTGATCTCAAACAACTCCGTCGGGC
TCGCTGTCGCTTCGCGAACCCTTCGTGGTGAGACTATAAATTAAGCAAAT
TGTTGTGCAATACTTCCACGAGTGTCAAGTGGATTGAGACCTGCGTCGAG
ATGTGGCTGCACCGTTTAACCCGCACCCCGTAATCACATCACAAAGTACA
ATTGGCCACCGGAATGATTATGCCTTGAAAGTAGATGGCGCTCCATGTGT
CGGCGAGCAGCACTTACGCCAAGGATGTGCGCTGCTGCTCCGGCTTCACG
CATTCAGCTCTCTCTGACTTGGTCGGTCATGCCTCCAGGACCCACAAACG
GTGGTCGACCAGCTGCCTTGAAATGCATTGCCAATCAATCTACACACGTT
TCCTACTCACGACCAAACTTGCAAGTCAATTGTGTTTGCCATCGAAACTT
ATGGTCGGAGGGGGCTTGTAACGAGATGTGCCTATGTGTGTGTTCCCATT
GCCACTTCTGTTCGCCCAGAAATATCCTGCGTTAACTTCCTGGTCCAGTC
CCGCACCCACCGAAGAGTTTCATCTTCGCAGGCATCCAGACGGACGGTGA
GCTGTGTATCTGCCCTAGAAGTGTGTCTATTTGTCCGGCAAACCCGTTGA
ACCACAAGTAATCGAATTATTTGCCTTCGAGATGTCTGGTGCATGTTGAT
GCATGTTTTCGTACCCAGTCGAACTCCATGTTTTACTCCGAGAGCGTGCA
GTGATATTTTTGTCCAACGGTTATGTTCGAAATCGTCGTCCCGTGCCACA
ACTCTTCCGCGATAGCCTTGGGTAATTTAAATGCTGCTGGCACGTTTGAC
AATCTGCAGGCTCAACGACAGTTGCTAGCTTTGTGGCACCGGCGAACGCA
TTCGCTCTTGCTTTACTTCACCACCCAGTGTTAATGGTCGAAATGGTTGT
GGTTTGCGCAACGCTCTCGCGTACTTCGTTGTACGCTTGGTGATGTGCGA
CGATCCACCACCCTTACTTAATCCTTTTGTTCATGGCTTGTTTTATTTCT
CGCGGTGTGTGTACAGCGTGGCCCTTCTACCAGGTCGCTCCCTGACTCGA
TGCAGATGTTGTGCACACGAAACGAAGACATTATTGTTGCCGTGTTTTTC
GATGTCAAGACGTGCGTCACGACTTCAACCGAAAATCAAGGCAGATTGAG
GGAGTTTTTACATCAGGCAAGCACGTTTTGCAGGCTTCATACTGGCATGT
TCGCGTCTCTGGATTCGCTCTTGTCTGGATTGACTGACGACTTACAACTC
CTCAAGTGCGTATCCACATCCACAGAATCGCCTGTGAGAAAGGCAGTCCA
CCTTCACTTGAGGCCTTCAAACTCCTGCCTGTGCAGTTTGTTGGTCTGAT
GAAAGTTACGCGACGAGCCAATTTTTGGGTCCAACAAAGCCAGTTTTCGA
TAAATTAGAAAGCTTGCCAGCAACACGGGCGTGAGCTTCCGCTCTAATGC
GCGCCAGAGTGGCACGCGTGTGTCGAGGTTCTGATATGGCTGTGGTTTGT
TTCATATTTTGACACCCGAGCTTTTGTATCATCGGGGCGGACACAAACCT
TCAACTCGCGCCACCTATATTCTGTGTGCTTCAACTCGCGCCACCTTGTT
TGTGTTAACTTATCCTTAAATCTGAGTTATGAATTGATTCGAACTCTTAT
CATCTTTCCGCACCCACAAAACGTGGTAGGCTAGGCTAAGATTTCGTGTT
CCAAGCTTGCGTTTGTGGGCGAGTTGACACGTGGCACGTGTTATCTTAAA
CCCGTGTTCAGGTGTGGTGAGTATTCCTCCATATCATTTGTTCGAATTTG
AACATAAGTTGCCGTCCACCCCTCGCGCACGCTCTCACCAGGTGAAAAAC
TCATTTAGTGAGACTTTCGCGGGGCGAGTTGTGTCTTTGCGACCTACCCT
GAAGGAATGCGCCGACGGACACGCAAACGTGAGCGAAGAGCGGGTAGATA
TGACTAGACCGTGCCGTACAGCCCGCCGATTTACGTGTGTTTTATTTAGT
TGACATCGAGCTAGCTCGTCGGGTGGTGATACCGTTATTTTTGTTGCTTT
CGTCAACACAAAGCCGATCTCTCGAAGCCGGGCAGACAGAGAAAGGGAGC
TGTGTGTGGTGTTTTATGCTGACCCAGCACAGCGCTTCCGGGCTTCTTAC
ATCGAGGTTTTTGATTTCGACATTTCTGAAGTCGATTCCTTCAGAAATAG
CACAAAGTTTGGTTGTCATCACCTACCCTTGCTGATGTTTGCCACGGGTC
TTCATGCTGTTCATTAGCCCTGAACCAAATATCTTCAGGCCTGACGAGGA
ATTATCGTGCACGACGTTTTTGATGCTCTCTCGAGGTTGTCGTCGATTAA
TGCGAATATTTCGATGTGCCCACTTGTTGTGGCGTATTTTGTGATTGAGC
CACTTTCTCTGGCGCAGTGTATGAAGCGTGGACGTGAGTCTCGCGCTATC
CGCACTTCCTCCACATTGGGAATATGCAACTAGGTCGCGTAGGCTGTTTC
TTTTCTCCACATTCACCCCAGATATTTCTGCTTTTCATAGCTTGGAGTGA
AATATTCCCTCCAGTTTTGGTTTAGTGAACAAATCCATGCCTGGACTTCT
TGTCCGAAGGTTTTGCCGTGCCGGCGTGTGCCACATTGCCATGCCCACTA
GACCAAAGCAAAATGGTGTGTTGCCAGCTTGCCGAATACTAGCACAAAGT
TGCTACTCGCCACCGTCCTAGATGAGGCGATTCTAAGGCAAATAGATTTA
TGGGTTACCGCACGTATGCTTTTTTTATCTGGACGAATGGTTGTTGGCGC
TGCCGCGCACCTGCGGCGCATGATGTGAGCGTTTGAACATAAATTTCCGA
ACTACATCAGCAGGACTACTGATTTGCATTAGAGAGTGCATGTTGAAACC
CTCCCTGTCACAGCGGGCGTGCAAAGCAATACTGCTGCTCCCTACGGTTG
TTTCTGTATTTTTTCTTCGTTAGCGCTGCCGCGCGAGAACTCGGTTGTTT
GTGTATGCTAATCGCACAGCGTGACCCCCGCAGGGCTCACAGCAAAACAC
GCAACGAGAGACATTAACTCACACGTCTGCGTCACGAGTTTTTTGTTTCT
GAGATCCCTCGAGAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGG
GAAAGCAAGGAGCTATACATAGCAGGAACACGGGAGTACCGGGGGAATGT
CCGAATTTCCAGAATAGGAACTAATCCTCTGTCAGATGTGACTTCTGCAA
TTGTAGCGGAAATATATTTTGTAAAGATCGAGACTGTTTTTGGGGCCAGA
CGTCAAATTACCAGGAAACCGTGTAGAGTCGTATGTGCAGAATATATACA
CAACCTCTAGGCCACACCCCTGTTCTCACGACACAGGTCATGCTGGTATC
GGATTGAAATAACTTGTCACATGTTGAACCATCTGAAATAGGCTGATCAT
CCATGAAGTGTGACCATATTTATCTATCTGCCTGGAGCATCTAACGATAT
AGAGTTCTGCATTAATTTCCTCTTCCGATATCAACGTTGTGTGCTGCCCT
TCTGTATATCGCGAATATTGTTGTGTACCATGCCCACAGGACGGGGTATT
GCGGTCGGTTCAAGATGAATTCGTACCTTTCAAGGAATCGGTGGACCAAA
TCCGGAATCGGTGGACTATGGATTCGTAGTGGCTGTAGTGCTGTGGAAGA
ACCATTGTTGCGCCTAAACATGTCTGTGGAATGACTTTTTTCCGGAGCTC
GACCTGGTGACACCCTACCCCACAACGTGCAAGAAGAACGTCATATCTGT
TCGGCTATTGCGATCTCAACGTTAGGTTAGATGCGGTTTACTGTTTTGAA
CCGAAACGACCTTCCAACAGAACGCGTTCTCCACCGCGTCAAAAATGCGT
TTCAGCATGATTTATGTCCGCCCACAAAACCAACGAACGTGCCGCCGCGG
ATGTCAACGCGTGGATATCTTCCTTGCCGTGTCGCACACGACTCTCGCCC
GCCGAGGTCGCGCGCGCGAGAGGGTCGATTAACTGTTGAAGAATAGCAAT
TTGTCAACGTTTGCTCACAGGCAGGTAGGTACACGTGCACGCTTTGTAGC
CACGACCGTACTTCGTATGAGAGTACGGGAGAAATCGTTGCCACCAGCAA
GGAGAAAGCCTTGGCGGTGAGGACATTGCTCAAGCTTCGGTGGTGGCCCT
TCGGAACTCGTGTAATACCAAAAACATCGGTAGCGCACAGGTGCTTCTTT
CGTTCGGTACATCAAAACGGCACAGCCAAGAGGTTTCAGCGGTATTTATG
GCGCGCGGATAGGCGTGGGTGCTGCGCATATCACCGTAGTGTTTATTGAT
GGTTCGTGTCCCGTAGCTCGATGCTCGGTGAGTGAGAGGAACGCGATGAT
GACGTTCTCGGCCCTATACGTTCTTACAAAAAACGCCGATCATGTGTCTT
CTCCGTGGTGCCAGTTTTTTTCAGCGAGTCGAGCAATGGATCGGAACAAG
ACCTTCAGAGGCTTTCCAAGTTCTCTGAGAAACCCCCCAGGGCGATGTCG
AGTGTGCCCTGTTTTGTGACCACGGGCCCCCGAGGATGTTTTTGGACTAG
ATAGCTAACATGAGAATCAACAGCTCCTACATATTAAAAAGCTTCCCCGT
CCTCGGCTCGATGAGCGAACCAACACGATTCTTCGTGCGCAATGCCTCCC
TATATACTGCTCTGTCTGGTGGATCTGCTGGGTGGTTATGTGTGCTCTCC
CGAGAATTTTCAGATTCGCGGATCCCCCCAAAAATGTTGACCACACTCCC
TTAACCCCTCTGGGACTTCAAGCGGGTTTTGGTGATTACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6282:5355..11045+

>mRNA_L-elsbetiae_contig6282.14902.1 ID=mRNA_L-elsbetiae_contig6282.14902.1|Name=mRNA_L-elsbetiae_contig6282.14902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig6282:5355..11045+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGATGTTGTGCACACGAAACGAAGACATTATTGTTGCCGTGTTTTT
CGATGTCAAGACGTGCGTCACGACTTCAACCGAAAATCAAGGCAGATTGA
GGGAGTTTTTACATCAGATGCAGATGTTGTGCACACGAAACGAAGACATT
ATTGTTGCCGTGTTTTTCGATGTCAAGACGTGCGTCACGACTTCAACCGA
AAATCAAGGCAGATTGAGGGAGTTTTTACATCAGGTGAAAAACTCATTTA
GTGAGACTTTCGCGGGGCGAGTTGTGTCTTTGCGACCTACCCTGAAGGAA
TGCGCCGACGGACACGCAAACGTGAAAAACTCATTTAGTGAGACTTTCGC
GGGGCGAGTTGTGTCTTTGCGACCTACCCTGAAGGAATGCGCCGACGGAC
ACGCAAACGACGGGGTATTGCGGTCGGTTCAAGATGAATTCGTACCTTTC
AAGGAATCGGTGGACCAAATCCGGAATCGGTGGACTATGGATTCGTAGGA
CGGGGTATTGCGGTCGGTTCAAGATGAATTCGTACCTTTCAAGGAATCGG
TGGACCAAATCCGGAATCGGTGGACTATGGATTCGTAG
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