mRNA_L-elsbetiae_contig101.148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.148.1
Unique NamemRNA_L-elsbetiae_contig101.148.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig101.148.1 vs. uniprot
Match: Q8QNM8_ESV1K (EsV-1-36 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM8_ESV1K)

HSP 1 Score: 254 bits (649), Expect = 1.570e-80
Identity = 141/297 (47.47%), Postives = 191/297 (64.31%), Query Frame = 1 
Query:   10 NGCFVNRSVKFKRQSKDGLVHAICGDVEIKQGDIVCYEIPAKSTGASLRLDILRYTMECVYEREETLFPCAFNQDAPSTDVKVFFDYVFSNAKYRREVSDRLALALYSQHRTQAEQHEQNNTVYIFKTLGIFDKCKYYNCDSVSYENGETFLVASKDIGIGDILTRTKSSVTIPSLEQERCQGKGLELFDLTLRLMSKFSVRDVHVFTKALSHRDNAELVRPAGSVFVIRSDLDPDLENRMAKYKMDREMGIATFHAGVERLSKKATDLSQKEKSIKKDEHLEELEEIYKRYNDAFE 900
            N CF++ +++FKR   +GL+H +C    IK G+ V YEIPAKST  S +LDI RYTM+CVY  E  LFPCAFNQ+APS D+KVFFDYVF    YRR +S+++ALALY+        H ++N  +++KT+G+F + +  NC  V YENGETFL A++D+ IG+ L     +VT+PS ++E         F  TLRLM+  ++ D  +F KAL++R+ A LVRP   V  + S  DP L+ R+AKY MDRE+GI  FH GV RL KK  +   KE        L +LEE+Y + ND FE
Sbjct:    6 NKCFLHPNLQFKRMD-NGLIHPVCQS-SIKAGETVAYEIPAKSTDQSFKLDIFRYTMQCVYSGE-CLFPCAFNQEAPSDDIKVFFDYVFRTT-YRRGLSEKVALALYA--------HNRSNAPFLYKTIGVFGQSEEANCLRVCYENGETFLAATRDVEIGETLMVAPGAVTVPSQKEEAD-------FSNTLRLMTNINLEDAPLFAKALAYREKAMLVRPDARVVHVNSKFDPGLDKRVAKYTMDRELGITDFHVGVGRLDKKYRENEAKE-------GLLDLEELYDKLNDEFE 276
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BLAST of mRNA_L-elsbetiae_contig101.148.1 vs. uniprot
Match: D8LP71_ECTSI (EsV-1-36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP71_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 2.410e-77
Identity = 146/303 (48.18%), Postives = 192/303 (63.37%), Query Frame = 1 
Query:    1 MVG--NGCFVNRSVKFKRQSKDGLVHAICGDVEIKQGDIVCYEIPAKSTGASLRLDILRYTMECVYEREETLFPCAFNQDAPSTDVKVFFDYVFSNAKYRREVSDRLALALYSQHRTQAEQHEQNNTVYIFKTLGIFDKCKYY-NCDSVSYENGETFLVASKDIGIGDILTRTKSSVTIPSLEQERCQGKGLELFDLTLRLMSKFSVRDVHVFTKALSHRDNAELVRPAGSVFVIRSDLDPDLENRMAKYKMDREMGIATFHAGVERLSKKATDLSQKEKSIKKDEHLEELEEIYKRYNDAFE 900
            MVG  N CF++  ++FKR + D L+H +C    I+ G+ V YEIP KST  S +LDI RYTM+CVY  E  LFPCAFNQ+AP+ D+KVFFDYVF    YRR +S+++ALALY+        H ++N  +++KT+G+F + +   NC  V YENGETFL A +D+ IG+ L     +VT+P L++E         F  TLRLMS   V D  +F KALS R+ A LVRP   V  + S  DP L+NR+AKY MDRE+GI  FH GV RL KK  +   KE +    E L +LEE+Y + ND FE
Sbjct:    1 MVGTMNRCFLHPDLQFKRTTDD-LIHPVCQS-PIRAGETVAYEIPVKSTAQSFKLDIFRYTMQCVYSGE-CLFPCAFNQEAPADDIKVFFDYVFRTT-YRRGLSEKVALALYA--------HNRSNAPFLYKTIGVFGQSEVEANCLRVRYENGETFLAAVRDVDIGENLVMAPGAVTVP-LQKEEAD------FSNTLRLMSNIDVEDAPLFAKALSFREKALLVRPDARVVHVNSKFDPGLDNRVAKYTMDRELGITDFHVGVGRLDKKYRE---KEAT----EGLLDLEELYGKLNDEFE 277
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNM8_ESV1K1.570e-8047.47EsV-1-36 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP71_ECTSI2.410e-7748.18EsV-1-36 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:37404..38315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-36
Ec32 orthologEc-06_006410.1
Exons1
Model size912
Cds size912
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.752876-CDS-L-elsbetiae_contig101:37403..383151622815241.752876-CDS-L-elsbetiae_contig101:37403..38315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 37404..38315 -
1691682790.8504677-CDS-L-elsbetiae_contig101:37403..383151691682790.8504677-CDS-L-elsbetiae_contig101:37403..38315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 37404..38315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.148.1prot_L-elsbetiae_contig101.148.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 37404..38315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.148.1

>prot_L-elsbetiae_contig101.148.1 ID=prot_L-elsbetiae_contig101.148.1|Name=mRNA_L-elsbetiae_contig101.148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=304bp
MVGNGCFVNRSVKFKRQSKDGLVHAICGDVEIKQGDIVCYEIPAKSTGAS
LRLDILRYTMECVYEREETLFPCAFNQDAPSTDVKVFFDYVFSNAKYRRE
VSDRLALALYSQHRTQAEQHEQNNTVYIFKTLGIFDKCKYYNCDSVSYEN
GETFLVASKDIGIGDILTRTKSSVTIPSLEQERCQGKGLELFDLTLRLMS
KFSVRDVHVFTKALSHRDNAELVRPAGSVFVIRSDLDPDLENRMAKYKMD
REMGIATFHAGVERLSKKATDLSQKEKSIKKDEHLEELEEIYKRYNDAFE
RGL*
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mRNA from alignment at L-elsbetiae_contig101:37404..38315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.148.1 ID=mRNA_L-elsbetiae_contig101.148.1|Name=mRNA_L-elsbetiae_contig101.148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig101:37404..38315- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGTAATGGGTGTTTTGTTAATCGGAGTGTGAAGTTCAAGCGCCA
ATCAAAAGATGGTTTGGTACACGCGATTTGTGGCGACGTCGAGATAAAGC
AGGGCGATATTGTATGCTACGAGATACCGGCAAAGTCTACGGGAGCTTCT
TTAAGGCTCGACATTTTAAGGTACACTATGGAGTGCGTGTACGAGCGTGA
AGAAACTCTTTTCCCCTGCGCTTTCAATCAGGATGCGCCGAGTACCGATG
TGAAAGTTTTCTTCGACTATGTTTTTTCAAATGCGAAGTACAGGAGAGAA
GTTTCGGACAGACTTGCTCTCGCACTCTACTCCCAACACCGGACGCAGGC
AGAGCAACATGAGCAAAATAATACAGTGTATATTTTTAAAACACTCGGCA
TTTTCGACAAGTGCAAATACTACAATTGTGACAGTGTTTCGTATGAAAAC
GGTGAAACCTTCCTCGTGGCTTCGAAAGATATCGGAATCGGAGATATTCT
GACCAGAACAAAAAGTTCGGTAACAATCCCGAGCCTCGAACAAGAACGAT
GTCAAGGAAAAGGATTAGAACTATTTGATCTTACTCTCCGTCTGATGTCG
AAATTCAGTGTACGCGATGTCCACGTTTTTACGAAGGCTCTTTCGCACCG
AGACAATGCAGAACTTGTACGTCCGGCCGGAAGCGTCTTTGTTATCCGCA
GTGATTTGGATCCCGACCTTGAAAACAGAATGGCTAAATACAAAATGGAT
CGAGAGATGGGGATAGCAACATTTCACGCAGGAGTGGAACGCCTCTCTAA
AAAAGCTACAGATCTGTCACAGAAGGAGAAGTCGATCAAGAAAGACGAAC
ACCTCGAGGAACTCGAAGAAATTTACAAACGATATAACGACGCTTTTGAA
CGTGGTTTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig101:37404..38315-

>mRNA_L-elsbetiae_contig101.148.1 ID=mRNA_L-elsbetiae_contig101.148.1|Name=mRNA_L-elsbetiae_contig101.148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1824bp|location=Sequence derived from alignment at L-elsbetiae_contig101:37404..38315- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGTAATGGGTGTTTTGTTAATCGGAGTGTGAAGTTCAAGCGCCA
ATCAAAAGATGGTTTGGTACACGCGATTTGTGGCGACGTCGAGATAAAGC
AGGGCGATATTGTATGCTACGAGATACCGGCAAAGTCTACGGGAGCTTCT
TTAAGGCTCGACATTTTAAGGTACACTATGGAGTGCGTGTACGAGCGTGA
AGAAACTCTTTTCCCCTGCGCTTTCAATCAGGATGCGCCGAGTACCGATG
TGAAAGTTTTCTTCGACTATGTTTTTTCAAATGCGAAGTACAGGAGAGAA
GTTTCGGACAGACTTGCTCTCGCACTCTACTCCCAACACCGGACGCAGGC
AGAGCAACATGAGCAAAATAATACAGTGTATATTTTTAAAACACTCGGCA
TTTTCGACAAGTGCAAATACTACAATTGTGACAGTGTTTCGTATGAAAAC
GGTGAAACCTTCCTCGTGGCTTCGAAAGATATCGGAATCGGAGATATTCT
GACCAGAACAAAAAGTTCGGTAACAATCCCGAGCCTCGAACAAGAACGAT
GTCAAGGAAAAGGATTAGAACTATTTGATCTTACTCTCCGTCTGATGTCG
AAATTCAGTGTACGCGATGTCCACGTTTTTACGAAGGCTCTTTCGCACCG
AGACAATGCAGAACTTGTACGTCCGGCCGGAAGCGTCTTTGTTATCCGCA
GTGATTTGGATCCCGACCTTGAAAACAGAATGGCTAAATACAAAATGGAT
CGAGAGATGGGGATAGCAACATTTCACGCAGGAGTGGAACGCCTCTCTAA
AAAAGCTACAGATCTGTCACAGAAGGAGAAGTCGATCAAGAAAGACGAAC
ACCTCGAGGAACTCGAAGAAATTTACAAACGATATAACGACGCTTTTGAA
CGTGGTTTGTAAATGGTGGGTAATGGGTGTTTTGTTAATCGGAGTGTGAA
GTTCAAGCGCCAATCAAAAGATGGTTTGGTACACGCGATTTGTGGCGACG
TCGAGATAAAGCAGGGCGATATTGTATGCTACGAGATACCGGCAAAGTCT
ACGGGAGCTTCTTTAAGGCTCGACATTTTAAGGTACACTATGGAGTGCGT
GTACGAGCGTGAAGAAACTCTTTTCCCCTGCGCTTTCAATCAGGATGCGC
CGAGTACCGATGTGAAAGTTTTCTTCGACTATGTTTTTTCAAATGCGAAG
TACAGGAGAGAAGTTTCGGACAGACTTGCTCTCGCACTCTACTCCCAACA
CCGGACGCAGGCAGAGCAACATGAGCAAAATAATACAGTGTATATTTTTA
AAACACTCGGCATTTTCGACAAGTGCAAATACTACAATTGTGACAGTGTT
TCGTATGAAAACGGTGAAACCTTCCTCGTGGCTTCGAAAGATATCGGAAT
CGGAGATATTCTGACCAGAACAAAAAGTTCGGTAACAATCCCGAGCCTCG
AACAAGAACGATGTCAAGGAAAAGGATTAGAACTATTTGATCTTACTCTC
CGTCTGATGTCGAAATTCAGTGTACGCGATGTCCACGTTTTTACGAAGGC
TCTTTCGCACCGAGACAATGCAGAACTTGTACGTCCGGCCGGAAGCGTCT
TTGTTATCCGCAGTGATTTGGATCCCGACCTTGAAAACAGAATGGCTAAA
TACAAAATGGATCGAGAGATGGGGATAGCAACATTTCACGCAGGAGTGGA
ACGCCTCTCTAAAAAAGCTACAGATCTGTCACAGAAGGAGAAGTCGATCA
AGAAAGACGAACACCTCGAGGAACTCGAAGAAATTTACAAACGATATAAC
GACGCTTTTGAACGTGGTTTGTAA
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