mRNA_L-elsbetiae_contig6275.14888.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6275.14888.1
Unique NamemRNA_L-elsbetiae_contig6275.14888.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: D8LNU8_ECTSI (60S ribosomal protein L10A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU8_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 3.390e-151
Identity = 222/230 (96.52%), Postives = 229/230 (99.57%), Query Frame = 2 
Query:   20 MTSKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            M+SKLNSELV+KAVDDILA+SAGETIK+G+ E+VGKKRKFTES+ELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF
Sbjct:    1 MSSKLNSELVTKAVDDILAFSAGETIKKGETEIVGKKRKFTESIELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 230
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: A0A835ZBY1_9STRA (60S ribosomal protein L10A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY1_9STRA)

HSP 1 Score: 368 bits (945), Expect = 3.530e-123
Identity = 182/228 (79.82%), Postives = 209/228 (91.67%), Query Frame = 2 
Query:   26 SKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            SKL S+++S+AV+D++A+S+G++I +   EV GKKRKFTESVELQV+LKNYDPQRDKRFSGTFKLPT+PRP +K+CMLGNAVHCE+AE +G+D+MSVEDLKKFNKNK +IKKFAKKYDAFLASD+LIKQIPRLLGPGLTKAGKFPTLV A D++Q K DTVRATIKFQMKKVMCLSVAVANVEQ K+EI LNVQLAANFLASLLKKNWQNI  MY+KSTMGP  QI+F
Sbjct:    2 SKLQSDILSQAVEDLMAFSSGKSITKDGEEVKGKKRKFTESVELQVSLKNYDPQRDKRFSGTFKLPTVPRPNLKICMLGNAVHCEKAEALGMDKMSVEDLKKFNKNKKIIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPTLVAATDDIQEKADTVRATIKFQMKKVMCLSVAVANVEQTKDEIVLNVQLAANFLASLLKKNWQNIASMYIKSTMGPPQQIYF 229
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: A0A7S2UTZ7_9STRA (Ribosomal protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTZ7_9STRA)

HSP 1 Score: 359 bits (922), Expect = 2.750e-119
Identity = 176/228 (77.19%), Postives = 202/228 (88.60%), Query Frame = 2 
Query:   26 SKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            SKL+SEL+ K+++DI AYS GETI RG  E+ GKKRKFTE++ELQV LKNYDPQRDKRFSGTFKLPTIPRP +K+C+LGNAVHCE+A +  LD MSVEDLKK NKNK LIKK AKKYDAFLASD+LIKQIPRLLGPGL KAGKFPTLV +G++LQ K D+VRATIKFQMKKVMCL+VA+ NV+ P  +++LNVQLAANFLASLLKKNWQNIKVMY+KSTMGP  QIF+
Sbjct:   29 SKLSSELLQKSLEDIFAYSKGETITRGGEEIKGKKRKFTETIELQVALKNYDPQRDKRFSGTFKLPTIPRPNLKICVLGNAVHCEEAGKANLDAMSVEDLKKLNKNKKLIKKLAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVTSGESLQDKADSVRATIKFQMKKVMCLNVAIGNVDMPIEDVQLNVQLAANFLASLLKKNWQNIKVMYIKSTMGPPFQIFY 256
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: A0A6V1MVV2_HETAK (Ribosomal protein n=3 Tax=Sar TaxID=2698737 RepID=A0A6V1MVV2_HETAK)

HSP 1 Score: 353 bits (905), Expect = 3.950e-117
Identity = 176/228 (77.19%), Postives = 198/228 (86.84%), Query Frame = 2 
Query:   26 SKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            SKL++EL+  AV+D+LAY+ GETI +   E+ GKKR F E++ELQV LKNYDPQRDKRFSGTFKLPT+PRP M +C+LGNAVHCEQA QIG+D MSVEDLKK NKNK LIKK AKKY AFLASD+LIKQIPRLLGPGL KAGKFPTLV +G++LQ KVDTVRATIKFQMKKVMC+SVAV N  Q + EI LNVQLAANFLASLLKKNWQNIKVMY+KSTMGP  QI+F
Sbjct:    2 SKLSNELLDAAVNDVLAYAKGETISKNGEELKGKKRNFVETIELQVALKNYDPQRDKRFSGTFKLPTVPRPNMTVCVLGNAVHCEQAAQIGIDAMSVEDLKKLNKNKKLIKKLAKKYMAFLASDTLIKQIPRLLGPGLNKAGKFPTLVASGEDLQEKVDTVRATIKFQMKKVMCMSVAVGNCNQAQEEISLNVQLAANFLASLLKKNWQNIKVMYIKSTMGPSFQIYF 229
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: A0A7S4E450_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E450_9STRA)

HSP 1 Score: 348 bits (892), Expect = 3.640e-115
Identity = 170/228 (74.56%), Postives = 198/228 (86.84%), Query Frame = 2 
Query:   26 SKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            SKLN +LV  A+D ILAYS+GETI+   A+V GKKRKF E+++LQ+ LKNYDPQRDKRFSGTFKLP +PRP +K C++GNAVHCE+AE+IG+D+MSV+DLKKFNKNK +IKKFAKK+DAFLASD+LIKQIPRLLGPGLTKAGKFPTL+  G +L  K+D VRATIKFQMKKVMCL+VAV NV   K +I  NV LA+NFLASLLKKNWQNIKV+YVKSTMGP  QIFF
Sbjct:    2 SKLNKDLVEGAIDKILAYSSGETIQHDGADVKGKKRKFVETIDLQIALKNYDPQRDKRFSGTFKLPVVPRPNLKCCIIGNAVHCEEAERIGVDKMSVDDLKKFNKNKKVIKKFAKKFDAFLASDTLIKQIPRLLGPGLTKAGKFPTLIEGGADLTEKIDGVRATIKFQMKKVMCLNVAVGNVSMEKAQIVTNVTLASNFLASLLKKNWQNIKVLYVKSTMGPPQQIFF 229
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: A0A6V2ARP3_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2ARP3_9STRA)

HSP 1 Score: 342 bits (878), Expect = 4.920e-113
Identity = 166/230 (72.17%), Postives = 198/230 (86.09%), Query Frame = 2 
Query:   20 MTSKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            M++KLNS L+ KAV DILAYSAGETI  G  EV GKKR F E++E+QVTLKNYDPQR+KRF+GTF+LP +PRP +K CMLGNA HCEQA++IG+D MSVEDLKK N+NK L+KK AKKYD FLASD++IKQIPRLLGPGLTKAGKFPTL+++GD++Q K++ V++TIKFQMKKV CL+VAVANV   K ++ +NVQLAANFLASLLKK WQNI  MY+KSTMGP  QIFF
Sbjct:    1 MSNKLNSALLEKAVTDILAYSAGETITMGKKEVTGKKRNFVETIEVQVTLKNYDPQREKRFAGTFRLPAVPRPNLKCCMLGNAAHCEQADRIGIDHMSVEDLKKLNRNKKLVKKLAKKYDFFLASDNMIKQIPRLLGPGLTKAGKFPTLLSSGDDMQDKIEEVKSTIKFQMKKVTCLNVAVANVGMDKQQVIVNVQLAANFLASLLKKQWQNIGQMYIKSTMGPPFQIFF 230
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: A0A7S2SBK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBK4_9STRA)

HSP 1 Score: 342 bits (876), Expect = 1.670e-112
Identity = 164/228 (71.93%), Postives = 198/228 (86.84%), Query Frame = 2 
Query:   26 SKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            SKLN E+V+ A+  +LAY+ GET+ +   E+ GK+RKFTE+++LQ+ LKNYDP RDKRFSGTFKLPTIPRP MK+C+LGNAVHCE+AE+IG++  SVEDLKKFNKNK +IKKFAKKYDAF+ASD+LIKQIPRLLGPGLTKAGKFPTL+  G  LQ  +DT++ATIKFQMKKVMCL+VAV N+ Q  +EI LN+QLA+NFLASLLKK WQNIKVMY+KSTMGP  Q+F+
Sbjct:   18 SKLNKEIVANALTKVLAYANGETVVKDGQEIEGKQRKFTETIDLQIALKNYDPSRDKRFSGTFKLPTIPRPNMKVCVLGNAVHCEEAERIGVEHKSVEDLKKFNKNKKIIKKFAKKYDAFVASDTLIKQIPRLLGPGLTKAGKFPTLIAPGQELQECIDTLKATIKFQMKKVMCLNVAVGNLGQTHDEILLNIQLASNFLASLLKKGWQNIKVMYIKSTMGPAFQVFY 245
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: A0A7S2UER1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UER1_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.980e-112
Identity = 167/230 (72.61%), Postives = 195/230 (84.78%), Query Frame = 2 
Query:   20 MTSKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            M +KLNS L+ KAV D LA+++GETIKR   EV GKKR FTE+ ELQ+TLKNYDPQRDKRFSGTFKLPT+PRP +K CMLGNA HCEQA++IG+D MSVEDLKK NKNK L+KK AKKYD FLASD++IKQIPRLLGPGLTKAGKFP+L+ +G+++Q K+D V++TIKFQMKKVMCL+VAV NVE  K EI +NVQLA NFL SLLKK WQNI  +Y KSTMGP  QI+F
Sbjct:    1 MANKLNSALLEKAVSDALAFASGETIKRSGEEVKGKKRNFTETCELQITLKNYDPQRDKRFSGTFKLPTVPRPNLKCCMLGNAAHCEQADRIGVDHMSVEDLKKLNKNKKLVKKLAKKYDFFLASDNMIKQIPRLLGPGLTKAGKFPSLLASGEDMQEKIDEVKSTIKFQMKKVMCLNVAVGNVEMDKKEIIVNVQLATNFLVSLLKKQWQNIGQVYFKSTMGPAIQIYF 230
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BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: F0WGZ9_9STRA (Ribosomal protein n=2 Tax=Albugo TaxID=65356 RepID=F0WGZ9_9STRA)

HSP 1 Score: 339 bits (870), Expect = 7.670e-112
Identity = 167/228 (73.25%), Postives = 197/228 (86.40%), Query Frame = 2 
Query:   26 SKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            SKLNSE++ KAV++ILAYS+GETI     EV GK+R F E++ELQ+ LKNYDPQ+DKRFSGTFKLPT+PRP MK+C+LGNAVHCEQAE+ G + M+V+DLKKFNKNK +IKKFAKKYDAFLASD+LIKQIPRLLGPGL KAGKFPTLV + ++L  K D +RATIKFQMKKVMCL+VA+ +V     EI +N QLAANFLASLLKKNWQNIKVMY+KSTMGPV QI++
Sbjct:    2 SKLNSEILEKAVNEILAYSSGETITVNGKEVKGKQRNFKETIELQIALKNYDPQKDKRFSGTFKLPTVPRPNMKICVLGNAVHCEQAEKDGFEFMTVDDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVGSSESLTEKADQLRATIKFQMKKVMCLNVAIGHVGLSTQEIVVNTQLAANFLASLLKKNWQNIKVMYLKSTMGPVQQIYY 229
[Close]
BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Match: H3GAM0_PHYRM (Ribosomal protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3GAM0_PHYRM)

HSP 1 Score: 339 bits (869), Expect = 8.500e-112
Identity = 169/228 (74.12%), Postives = 196/228 (85.96%), Query Frame = 2 
Query:   26 SKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTLKNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAANFLASLLKKNWQNIKVMYVKSTMGPVHQIFF 709
            SKLNS+L+S+AVDDILA+SAGET+K       GKKR F E++ELQ+ LKNYDPQ+DKRFSGTFKLPT+PRP MK+C+LGNA+HCE AE+ G + M+V+DLKKFNKNK +IKKFAKKYDAFLASD+LIKQIPRLLGPGL KAGKFPTLV A D+L  K D VRATIKFQMKKVMCL+VA+ +V   K +I +N QLAANFLASLLKKNWQNIKV+Y+KSTMGP  QIFF
Sbjct:    2 SKLNSDLLSQAVDDILAFSAGETVK-------GKKRNFNETIELQIALKNYDPQKDKRFSGTFKLPTVPRPNMKICVLGNAIHCEMAEKEGFEYMTVDDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVTANDSLTEKADQVRATIKFQMKKVMCLNVAIGHVGLDKQQIVVNTQLAANFLASLLKKNWQNIKVLYLKSTMGPPVQIFF 222
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6275.14888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNU8_ECTSI3.390e-15196.5260S ribosomal protein L10A n=2 Tax=Ectocarpus TaxI... [more]
A0A835ZBY1_9STRA3.530e-12379.8260S ribosomal protein L10A n=1 Tax=Tribonema minus... [more]
A0A7S2UTZ7_9STRA2.750e-11977.19Ribosomal protein n=1 Tax=Fibrocapsa japonica TaxI... [more]
A0A6V1MVV2_HETAK3.950e-11777.19Ribosomal protein n=3 Tax=Sar TaxID=2698737 RepID=... [more]
A0A7S4E450_9STRA3.640e-11574.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V2ARP3_9STRA4.920e-11372.17Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S2SBK4_9STRA1.670e-11271.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UER1_9STRA1.980e-11272.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]
F0WGZ9_9STRA7.670e-11273.25Ribosomal protein n=2 Tax=Albugo TaxID=65356 RepID... [more]
H3GAM0_PHYRM8.500e-11274.12Ribosomal protein n=4 Tax=Phytophthora TaxID=4783 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6275contigL-elsbetiae_contig6275:2027..7155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.4
Seed ortholog evalue2.6e-121
Seed eggNOG ortholog2880.D8LNU8
Preferred nameRPL10A
KEGG koko:K02865,ko:K04532
KEGG Pathwayko03010,ko05010,map03010,map05010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000470,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0042273,GO:0042493,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG0081@1,KOG1570@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Ec32 ortholog descriptionRibosomal protein L1, 2-layer alpha/beta-sandwich
Ec32 orthologEc-08_005760.1
Exons7
Model size1508
Cds size693
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.6012897-UTR-L-elsbetiae_contig6275:2026..20451622816689.6012897-UTR-L-elsbetiae_contig6275:2026..2045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6275 2027..2045 +
1691683742.0946057-UTR-L-elsbetiae_contig6275:2026..20451691683742.0946057-UTR-L-elsbetiae_contig6275:2026..2045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6275 2027..2045 +
1622816689.7076395-UTR-L-elsbetiae_contig6275:6359..71551622816689.7076395-UTR-L-elsbetiae_contig6275:6359..7155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6275 6360..7155 +
1691683742.1902077-UTR-L-elsbetiae_contig6275:6359..71551691683742.1902077-UTR-L-elsbetiae_contig6275:6359..7155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6275 6360..7155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.6119747-CDS-L-elsbetiae_contig6275:2045..21861622816689.6119747-CDS-L-elsbetiae_contig6275:2045..2186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 2046..2186 +
1691683742.111595-CDS-L-elsbetiae_contig6275:2045..21861691683742.111595-CDS-L-elsbetiae_contig6275:2045..2186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 2046..2186 +
1622816689.6226377-CDS-L-elsbetiae_contig6275:2665..27391622816689.6226377-CDS-L-elsbetiae_contig6275:2665..2739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 2666..2739 +
1691683742.126061-CDS-L-elsbetiae_contig6275:2665..27391691683742.126061-CDS-L-elsbetiae_contig6275:2665..2739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 2666..2739 +
1622816689.636975-CDS-L-elsbetiae_contig6275:3401..34501622816689.636975-CDS-L-elsbetiae_contig6275:3401..3450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 3402..3450 +
1691683742.1383862-CDS-L-elsbetiae_contig6275:3401..34501691683742.1383862-CDS-L-elsbetiae_contig6275:3401..3450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 3402..3450 +
1622816689.6480515-CDS-L-elsbetiae_contig6275:4393..45221622816689.6480515-CDS-L-elsbetiae_contig6275:4393..4522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 4394..4522 +
1691683742.1492178-CDS-L-elsbetiae_contig6275:4393..45221691683742.1492178-CDS-L-elsbetiae_contig6275:4393..4522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 4394..4522 +
1622816689.6633465-CDS-L-elsbetiae_contig6275:4949..50751622816689.6633465-CDS-L-elsbetiae_contig6275:4949..5075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 4950..5075 +
1691683742.1592865-CDS-L-elsbetiae_contig6275:4949..50751691683742.1592865-CDS-L-elsbetiae_contig6275:4949..5075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 4950..5075 +
1622816689.6792133-CDS-L-elsbetiae_contig6275:5538..56611622816689.6792133-CDS-L-elsbetiae_contig6275:5538..5661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 5539..5661 +
1691683742.1719024-CDS-L-elsbetiae_contig6275:5538..56611691683742.1719024-CDS-L-elsbetiae_contig6275:5538..5661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 5539..5661 +
1622816689.6936305-CDS-L-elsbetiae_contig6275:6308..63591622816689.6936305-CDS-L-elsbetiae_contig6275:6308..6359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 6309..6359 +
1691683742.1821604-CDS-L-elsbetiae_contig6275:6308..63591691683742.1821604-CDS-L-elsbetiae_contig6275:6308..6359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6275 6309..6359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6275.14888.1prot_L-elsbetiae_contig6275.14888.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6275 2046..6359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6275.14888.1

>prot_L-elsbetiae_contig6275.14888.1 ID=prot_L-elsbetiae_contig6275.14888.1|Name=mRNA_L-elsbetiae_contig6275.14888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
MTSKLNSELVSKAVDDILAYSAGETIKRGDAEVVGKKRKFTESVELQVTL
KNYDPQRDKRFSGTFKLPTIPRPRMKLCMLGNAVHCEQAEQIGLDRMSVE
DLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLV
NAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEIELNVQLAAN
FLASLLKKNWQNIKVMYVKSTMGPVHQIFF*
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mRNA from alignment at L-elsbetiae_contig6275:2027..7155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6275.14888.1 ID=mRNA_L-elsbetiae_contig6275.14888.1|Name=mRNA_L-elsbetiae_contig6275.14888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5129bp|location=Sequence derived from alignment at L-elsbetiae_contig6275:2027..7155+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCAACTTCTGGCAAAGATGACTAGCAAGCTGAACAGCGAACTCGTAT
CCAAGGCTGTGGATGACATCCTCGCCTACTCGGCGGGTGAGACCATCAAG
AGGGGCGATGCCGAGGTCGTCGGCAAGAAGCGCAAGTTCACCGAGTCCGT
CGAGCTCCAGGTGATCAGTCGTCTCTCAAAATGGCCCATGTACACACGAG
ACACACCCTTGCACCGTCGTAACATTGAGCATGGATGTTACACCCTGCAA
GAGGCTCAGTTTATCCCCCTGCCGTGGTATGTGCCTGTACCTCCCCAGTG
TCTCCTTGGTACTCGTACTTTATGAACAACTCGATCGAGGCCACGAAGCG
ATCTAGGCCATCGAAACATCCATGCGAAAGTCGCGACGACAGAGTGGTTG
TGCACCTGCCACGCCCCGATAAGAGGAAGCCGGGGCATCTTTGCGTTACT
CACGGATAATCCTCGCGAGGAACAGAGGCCTGTGAAGCATTTGGTCCGTT
TGTGCCGGAAAAACGGGACTTGGTCTGACAAAAGCATTAATTTTCACTTA
TTTTTATCGAAGGGATGTTTCTCTTTCAAAGGGATGTAGCCTCACCTGCT
GCTGATGACTGTGTTGCTGTGTTGCTTTCCCATCCCCAGGTGACCCTGAA
GAACTACGACCCCCAGCGCGACAAGCGTTTCTCCGGTACCTTCAAGCTGC
CCACCATCCCCCGGTAAGCCAACCAACCACTCTTTGACTTCGTCCTGTGG
CCCAGTCACGCGTTTGTACCGCGCCTACTTATCTTACAACACTTGTACTG
TGGATAGTTTCGTCCACTCCATTCTTTCCCCTGCATAATTTTCATCGTCG
AACTGCTGTTGCGCGGGTGGGATGCGGCGAGCGCAGCAGGCCAGGAAAAA
CAAACGGGAAATAAAATAGCAGCAGTATTCGTGTACACAGCCTCTGCTGC
TGGTACACATGTACATGGGTGGCTAGTTCAGTGCTTCTGAAGACGAGCAG
TTCGCATACCAGGAAGAAAAATATGGATACTTTCATACTTGCATACTTCG
AAGTACATATTTTCCCAGCCCCACGTCTTGGCCGTACCGTGCTGTGGTCT
GACCTTGTCCTGTTTTCTGTTCCTCGTCCCCCGTCCCACCCGGACCCTCC
CCAATTCCGCTTATTTTCTGGGTTTGTCGAAATCTGGTGGGCTGTTCGTT
TCGCGTCGGCGGGCGGGGGATGGATGATGGATCACGCCGGGATGGTTTGG
ATGGTGCCCAAAAAATATCGCGCCGCGACTTGAACGGACTCGCCCCCCCC
CCGGTGATGGACTTTTTCGTGCAACGTGCTTCCTTTCTGGCTTTCGGATA
CACGGCCGTGACTTGTGTTGTGCAGCCCGCGGATGAAGCTCTGCATGCTC
GGTAACGCCGTGCACTGCGAGCAGGTGAGACACGACTAGTGATTTATTCG
CTGCTGGTGGTTGGTCATTTTGAGAAGCATGTTTTTGACCTTTTCAGTTG
GGGGAAGGAACCCTTCCGTGTGACCACGGTGGTTCAGTACTCTGGCAAGA
TGCCCTCATGACAGGGGGCCCATCGAGCATTGATAATAATTATGACGTGC
CAGCGGCACTCCCAGACTTCCGCGTGGTCGACGCCAGGATTCTATCATAG
TTAAGAGTTGTTCGCGGCGTTGCATGCGGACAAGTTTGGACGACGTGGGC
GCTCTTGTTTGGGGGGACAAAACCCACGTGCGCACACATACCCGAGGGGA
TCGTCGTTGATTTCGTGGATTTTATTGAAACGACGATGTGCATGCCAAGC
ACGTGTTGATGTCGGTCTATTTATCTTGCGAGAGATGACACGAGCCGAGA
CTGTGCGTGCCTAGTTTTGCTGCGCGAAACGCTGTATGTATACGTAAAAT
GATGGGGTGTGGGGGGTTCAGACGTCTTGGGTATGGCGCAGCGCCCATTT
TTATTATCTTGGGCAGGGGTGGGGTCATTGCGGTGGGTTCCCGGGGGGCT
ACAGTGTCGTTTGTAGAAAAGCCAGAGCCTGACTGCCTGCCAGATTTTTG
TTTGGCACTGGTGTGCCCGTGCGTGGCGATCTGCCGCGTAATTACCATTG
TTTTGTTTTGATTTATTTGTGTGCGGTTTGTGTTGGTGGCCGTTCTCCTC
CCTGTCGTTGCGGATGCCGTTTATATCTGTCACGTCTTATTTGCGCTTGA
GACAAAAACCAGTCTAGCAGGCCGTCTTTTCGATGCTGTTCTGCTTCCCT
CCCGCACCTAGATTACTACTGTTTTGATGCATCGTATCGCACCGCATCGC
ATCGCATCTCCAACCCTTACCATCCATGTTCTCTCCGTCTTGGCCTTTTG
TCTGTTGCTGTTCGCAGGCCGAGCAGATCGGCCTCGACCGCATGTCGGTG
GAGGACCTCAAGAAGTTCAACAAGAACAAGAATCTCATCAAGAAGTTCGC
CAAGAAGTACGACGCCTTCCTCGCCTCGGACTCGCTCATCAAGCAGGTAG
GTTGGTTTTCATTTGCCTTTTGAATTTACTGCCACACAGATGTACAGGCT
ACTGTTGTGTATGGAAGTAGGATACATTTTTTTCTGGCAAGATGTGGCGT
CCTCTCCCGGTGTGCTGTATTGGTACAGTCTTATTTTTCTGCTCCGCCTT
GCACGATGATTTCGTTCGTGTGAACTGCAGCCCTGTTGATCCTAGTGTGC
AGCTTATTTCGCCATTTTTCGACAGGGTGTTTGGGGTCAAATTTCGGGTT
GAAAATAAAGTTCAATAGTGCGCAGCGAGTCGGAAAGCGGTTTTGCGAGT
CGCTCAGAGTCGTGAACCGTTTTGGAGTTCATTTACATGCAATCCACACA
AGCGTAGACGACACACTGCTGTCATTCACACGACCTTTTTCTTCGATTGT
GTGTGTTTTTTGCTGTTTCGTAGATCCCTCGTCTGTTGGGCCCCGGTCTG
ACCAAGGCTGGTAAGTTCCCCACCCTCGTCAACGCCGGGGACAACCTCCA
GAGCAAGGTCGACACCGTGCGCGCCACCATCAAGTTCCAGATGAAGAAGG
TGAGGCATACATACATACATACATACATATATAATACATAGTTCGAAGTA
CATCATCCATACTCTACTTATGAGGTGACAGGGAGGCGTGAAGGATGGAA
GCATTCGCGTGTTGGTATCTTGCGGCTGAGATGCCGGTGGCGTTTTCGCG
TACTTGAACAGTTGTGTCGCAGCCAATCCGCAGGTGTTGTCCCCCCCCCC
CTTGCCGAACCAGCCTCTTTTGCCTGGCACTTTATCTAAACTGTCTGAAC
TGATACATCAATAGCTTTGGCGGTCTACGATTTCATTTCAGATGCACTTT
CGACTGTGCTACGCCTGTAGGCACAACATGCGCCAAAAAGCGGTTGTACG
TACTTGAAATCGTGTGGAGACGGCGACGACGACACCCTGAAAAGCCGCAC
GCTCTTGAGCGCTCACTGTTGTACACTTGTCTCAAAACTCCCAACCCGAT
GCTTCCGTCCAGGTGATGTGCCTCTCGGTGGCCGTGGCCAACGTGGAGCA
GCCCAAGAACGAGATCGAGCTCAACGTGCAGCTTGCCGCCAACTTCCTGG
CCTCTCTGCTCAAGAAGAACTGGCAGAACATCAAGGTACGTACACACTTG
CGCCTTCTTTTCAGCCCTGGTTTTGGTCTAGTTTGGTTTAGGGGCGTGGC
TTCTCGTTTTATGTTTGCTTGCCGTGAATGATGGGAGGTAGATTGCGCTG
ACGCTGGGACTCAAGATAAGACTCTTCGGTAGCATGCCCGCAGCATTCGC
TGTTTTTGGAGTTCACCCCCTGAAAAAGAAACATGTGTGTGTGTGCAGTC
GACGCCCGTGCTCACACGCGCTAAACGTGATTTTGGTCGACCCTACCAGG
GTGTCCAAACCCTCCGGGGAATTTCGTCCCTCGATGTTTGATGTTGCCGC
ATCGTCCCGGCTGCAGCAAAAGTGGGGGTATGCATAACCTTCAGTTGAGC
AAGCTCACTCGCTAAGTTTTTTCTAGGGGTGATGCGATTGTCGAGCCGTA
TGCGTTGAAACGTGGCTGTTCCTCAAACGGGGCATGTCTCCCCACGAGAC
CGTACAAAAGCTGCCCCTGGCTTCCTTGTTTTGTGCGTGTGTTCCCCCTC
ATGTACATGAAGCACAATGCAATCATCAAGCGAACTCTGACACGGCCTGT
GTTTGTCTCTGTCTCTCTCTGTGTCCGACCCGCGTTGCACTGCGATCGTT
TCTCGCCGCCGTGACTGCACCGCTCGCCCCAGGTGATGTACGTGAAGAGC
ACCATGGGCCCCGTGCACCAGATCTTCTTCTGAGGAGACTTCTCTCGGGA
AGCTTCTTTCTTGGAAGATGACGACGACGATGCTTGTGTGCCTCTCTCGC
CCCTGCGCGGCCTTCCCATCTCGATGAGGGGGTTGATTCAGAGGGGTGCC
TCCACCGGCGCCTTCGGGGGAGGGCCCGCAGCCAATAATTGTTTACTCTT
ACCTTTCACGAGCAGCTTTCGATCCTTCTCTTTCCTTTCGGGTCTTGTTT
TTCTGTGTGCCTTCATTGTCTCCCCTTGGGCGTATCCTCCGTCACTTTTT
TTGTGTCGCGCTGATGCGTTTTGGGGGTGTCGTGGGCGCGTGCGGGGTTT
CTCAAGGCCTGCTATTAGGACCGAGGTTTACAGGGTTTGAATGCTGGGAG
TGTTTTGGGAGCTAAACAGCTTGCAGTGTCTCTTTGCCTGAAAAGGTTTC
AAGTACACAGCAATCTACGCCGATGGGGGTCTGTTCTTGCCAGAGCGGAC
CCCTCTCTGATGACGAGGACTAAAAAAACGAAAGTTTATCAAAATTCTGA
TGTGTTGTGTGTCGTGACCTTGCGGGGCACTTGGTCACTTTTTCCTTTTA
CACCGTGCGTATGTACGTGCGGAAGCGCATAATGGGGGTGTTGCGGCCCT
TCCGGGGCTGTGGCGGCGTGTGACACGCGGGTTGCCTCCATTCAAAACCG
CATGTTCCACACGCGTTTTTAGGAAAAAAAACTACGCACGAGTGGTAGTT
TACAAGTTACTTGCCACCTCATTCCGTGCATCTGAACACACAGATCGCCA
AAACGGCCCGACGATTGAGTGTTTCATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6275:2027..7155+

>mRNA_L-elsbetiae_contig6275.14888.1 ID=mRNA_L-elsbetiae_contig6275.14888.1|Name=mRNA_L-elsbetiae_contig6275.14888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig6275:2027..7155+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTAGCAAGCTGAACAGCGAACTCGTATCCAAGGCTGTGGATGACAT
CCTCGCCTACTCGGCGGGTGAGACCATCAAGAGGGGCGATGCCGAGGTCG
TCGGCAAGAAGCGCAAGTTCACCGAGTCCGTCGAGCTCCAGATGACTAGC
AAGCTGAACAGCGAACTCGTATCCAAGGCTGTGGATGACATCCTCGCCTA
CTCGGCGGGTGAGACCATCAAGAGGGGCGATGCCGAGGTCGTCGGCAAGA
AGCGCAAGTTCACCGAGTCCGTCGAGCTCCAGGTGACCCTGAAGAACTAC
GACCCCCAGCGCGACAAGCGTTTCTCCGGTACCTTCAAGCTGCCCACCAT
CCCCCGGTGACCCTGAAGAACTACGACCCCCAGCGCGACAAGCGTTTCTC
CGGTACCTTCAAGCTGCCCACCATCCCCCGCCCGCGGATGAAGCTCTGCA
TGCTCGGTAACGCCGTGCACTGCGAGCAGCCCGCGGATGAAGCTCTGCAT
GCTCGGTAACGCCGTGCACTGCGAGCAGGCCGAGCAGATCGGCCTCGACC
GCATGTCGGTGGAGGACCTCAAGAAGTTCAACAAGAACAAGAATCTCATC
AAGAAGTTCGCCAAGAAGTACGACGCCTTCCTCGCCTCGGACTCGCTCAT
CAAGCAGGCCGAGCAGATCGGCCTCGACCGCATGTCGGTGGAGGACCTCA
AGAAGTTCAACAAGAACAAGAATCTCATCAAGAAGTTCGCCAAGAAGTAC
GACGCCTTCCTCGCCTCGGACTCGCTCATCAAGCAGATCCCTCGTCTGTT
GGGCCCCGGTCTGACCAAGGCTGGTAAGTTCCCCACCCTCGTCAACGCCG
GGGACAACCTCCAGAGCAAGGTCGACACCGTGCGCGCCACCATCAAGTTC
CAGATGAAGAAGATCCCTCGTCTGTTGGGCCCCGGTCTGACCAAGGCTGG
TAAGTTCCCCACCCTCGTCAACGCCGGGGACAACCTCCAGAGCAAGGTCG
ACACCGTGCGCGCCACCATCAAGTTCCAGATGAAGAAGGTGATGTGCCTC
TCGGTGGCCGTGGCCAACGTGGAGCAGCCCAAGAACGAGATCGAGCTCAA
CGTGCAGCTTGCCGCCAACTTCCTGGCCTCTCTGCTCAAGAAGAACTGGC
AGAACATCAAGGTGATGTGCCTCTCGGTGGCCGTGGCCAACGTGGAGCAG
CCCAAGAACGAGATCGAGCTCAACGTGCAGCTTGCCGCCAACTTCCTGGC
CTCTCTGCTCAAGAAGAACTGGCAGAACATCAAGGTGATGTACGTGAAGA
GCACCATGGGCCCCGTGCACCAGATCTTCTTCTGAGTGATGTACGTGAAG
AGCACCATGGGCCCCGTGCACCAGATCTTCTTCTGA
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