mRNA_L-elsbetiae_contig6266.14878.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6266.14878.1
Unique NamemRNA_L-elsbetiae_contig6266.14878.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6266.14878.1 vs. uniprot
Match: Q8QKU7_ESV1K (EsV-1-190 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKU7_ESV1K)

HSP 1 Score: 173 bits (439), Expect = 3.810e-52
Identity = 96/181 (53.04%), Postives = 124/181 (68.51%), Query Frame = 1 
Query:    1 QMKLSIFVLCTSFFSSALSFLPALFSIENFIKSPSCLPTHRLHRVCESLSDFARAVDHRHKIGDLHGSWRQLRPKDNGFTSYQTIDYAKQFALETTLFSNGTRVEGVMPFTTCGSDETAYFTHSKEFTTFSDNSRFARNITCSAKSFELVYASASLRVDRMISAGSDSDFRVFVPCNDVFL 543
            +MKLSI +L T+  SSALSFLP LFSIENFIKSP C     L RVC+ L          + +  LHGSWR ++P D   T YQTID   ++AL + LFSNGTR+   MPF TC  +ET YF H+K FT F+D+S +  N TCS++SF+LVYAS S+RVD+M++ G+   FRV+VPC++V L
Sbjct:    2 KMKLSI-ILATTLVSSALSFLPKLFSIENFIKSPGC----NLDRVCQKLPAT------NNDVAALHGSWRLVKPADPETTIYQTIDREHEYALTSKLFSNGTRIHEAMPFVTCRRNETIYFNHAKIFTIFADDSGYTSNATCSSQSFQLVYASTSIRVDKMVATGA---FRVYVPCDEVML 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6266.14878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKU7_ESV1K3.810e-5253.04EsV-1-190 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6266contigL-elsbetiae_contig6266:9512..10063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size552
Cds size549
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.584162-CDS-L-elsbetiae_contig6266:9511..100601622816688.584162-CDS-L-elsbetiae_contig6266:9511..10060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 9512..10060 -
1691683741.3147597-CDS-L-elsbetiae_contig6266:9511..100601691683741.3147597-CDS-L-elsbetiae_contig6266:9511..10060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 9512..10060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.5948105-UTR-L-elsbetiae_contig6266:10060..100631622816688.5948105-UTR-L-elsbetiae_contig6266:10060..10063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6266 10061..10063 -
1691683741.3253152-UTR-L-elsbetiae_contig6266:10060..100631691683741.3253152-UTR-L-elsbetiae_contig6266:10060..10063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6266 10061..10063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6266.14878.1prot_L-elsbetiae_contig6266.14878.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6266 9512..10060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6266.14878.1

>prot_L-elsbetiae_contig6266.14878.1 ID=prot_L-elsbetiae_contig6266.14878.1|Name=mRNA_L-elsbetiae_contig6266.14878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MKLSIFVLCTSFFSSALSFLPALFSIENFIKSPSCLPTHRLHRVCESLSD
FARAVDHRHKIGDLHGSWRQLRPKDNGFTSYQTIDYAKQFALETTLFSNG
TRVEGVMPFTTCGSDETAYFTHSKEFTTFSDNSRFARNITCSAKSFELVY
ASASLRVDRMISAGSDSDFRVFVPCNDVFLMM*
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mRNA from alignment at L-elsbetiae_contig6266:9512..10063-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6266.14878.1 ID=mRNA_L-elsbetiae_contig6266.14878.1|Name=mRNA_L-elsbetiae_contig6266.14878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:9512..10063- (Laminarionema elsbetiae ELsaHSoW15)
CAAATGAAATTATCTATCTTCGTGCTCTGCACGAGCTTTTTTTCTTCCGC
TCTCTCTTTCCTGCCCGCTCTCTTCAGCATCGAAAACTTCATCAAATCGC
CCTCGTGCCTCCCAACCCACAGACTGCACCGCGTGTGCGAGTCGCTTTCG
GACTTCGCACGGGCCGTCGACCATCGGCACAAGATCGGCGACTTGCACGG
CTCGTGGCGGCAGCTCCGGCCGAAAGACAATGGCTTTACTTCCTACCAGA
CGATCGACTACGCCAAACAGTTCGCCCTCGAGACAACTCTTTTTTCCAAC
GGCACCCGGGTGGAAGGGGTGATGCCGTTCACGACATGTGGTAGCGACGA
GACGGCGTATTTCACGCACTCCAAGGAGTTCACTACCTTTTCGGACAACT
CTCGATTCGCGAGGAACATAACATGCAGCGCCAAGTCGTTCGAGCTGGTC
TACGCTAGCGCCTCTCTTCGCGTCGACCGGATGATTTCGGCGGGGTCGGA
CTCTGACTTTCGCGTGTTTGTGCCGTGCAATGACGTGTTCTTGATGATGT
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6266:9512..10063-

>mRNA_L-elsbetiae_contig6266.14878.1 ID=mRNA_L-elsbetiae_contig6266.14878.1|Name=mRNA_L-elsbetiae_contig6266.14878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:9512..10063- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATTATCTATCTTCGTGCTCTGCACGAGCTTTTTTTCTTCCGCTCT
CTCTTTCCTGCCCGCTCTCTTCAGCATCGAAAACTTCATCAAATCGCCCT
CGTGCCTCCCAACCCACAGACTGCACCGCGTGTGCGAGTCGCTTTCGGAC
TTCGCACGGGCCGTCGACCATCGGCACAAGATCGGCGACTTGCACGGCTC
GTGGCGGCAGCTCCGGCCGAAAGACAATGGCTTTACTTCCTACCAGACGA
TCGACTACGCCAAACAGTTCGCCCTCGAGACAACTCTTTTTTCCAACGGC
ACCCGGGTGGAAGGGGTGATGCCGTTCACGACATGTGGTAGCGACGAGAC
GGCGTATTTCACGCACTCCAAGGAGTTCACTACCTTTTCGGACAACTCTC
GATTCGCGAGGAACATAACATGCAGCGCCAAGTCGTTCGAGCTGGTCTAC
GCTAGCGCCTCTCTTCGCGTCGACCGGATGATTTCGGCGGGGTCGGACTC
TGACTTTCGCGTGTTTGTGCCGTGCAATGACGTGTTCTTGATGATGTAAA
TGAAATTATCTATCTTCGTGCTCTGCACGAGCTTTTTTTCTTCCGCTCTC
TCTTTCCTGCCCGCTCTCTTCAGCATCGAAAACTTCATCAAATCGCCCTC
GTGCCTCCCAACCCACAGACTGCACCGCGTGTGCGAGTCGCTTTCGGACT
TCGCACGGGCCGTCGACCATCGGCACAAGATCGGCGACTTGCACGGCTCG
TGGCGGCAGCTCCGGCCGAAAGACAATGGCTTTACTTCCTACCAGACGAT
CGACTACGCCAAACAGTTCGCCCTCGAGACAACTCTTTTTTCCAACGGCA
CCCGGGTGGAAGGGGTGATGCCGTTCACGACATGTGGTAGCGACGAGACG
GCGTATTTCACGCACTCCAAGGAGTTCACTACCTTTTCGGACAACTCTCG
ATTCGCGAGGAACATAACATGCAGCGCCAAGTCGTTCGAGCTGGTCTACG
CTAGCGCCTCTCTTCGCGTCGACCGGATGATTTCGGCGGGGTCGGACTCT
GACTTTCGCGTGTTTGTGCCGTGCAATGACGTGTTCTTGATGATGTAA
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