prot_L-elsbetiae_contig6261.14868.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6261.14868.1
Unique Nameprot_L-elsbetiae_contig6261.14868.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length101
Homology
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: D8LE95_ECTSI (Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-9
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0
Query:   56 TLRQHDFRTARVALVPSVPGTRRHR-------HKGKDAHRYGHMRIRALLSR 100
            TL ++DFR ARVALVPSVPGT  +        HKG+D H+YGHMR+RALL+R
Sbjct:  245 TLGEYDFRGARVALVPSVPGTGGNTPGTGGKPHKGRDLHKYGHMRVRALLAR 296          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A2P6TZD2_CHLSO (Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZD2_CHLSO)

HSP 1 Score: 60.1 bits (144), Expect = 2.250e-8
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 0
Query:   38 FPGVLILFVPLPFVLGGRT---------LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR 100
            F GVL  FV    +LG RT         +  HD++ AR ALVPSVPG  R  H G+D H++GH+R+R LL R
Sbjct:  125 FGGVLFDFVQAT-LLGFRTQAALDLLRCIASHDYKFARAALVPSVPGPDRGHHTGEDMHKWGHLRLRGLLQR 195          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A6A4E9V0_9STRA (Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E9V0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.700e-7
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0
Query:   55 RTLRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALL 98
            R L++ DF +ARVALVPSVPG     HKGKD  +YGH+R+R LL
Sbjct:  230 RELKRFDFSSARVALVPSVPGY----HKGKDMEKYGHLRVRKLL 269          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A225WPR3_9STRA (Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPR3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.920e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0
Query:   57 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALL 98
            L++ DF TARVALVP+VPG     HKGKD  +YGH+R+R LL
Sbjct:  327 LKRFDFSTARVALVPAVPGV----HKGKDMEKYGHLRVRKLL 364          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A833TKC6_PHYIN (Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TKC6_PHYIN)

HSP 1 Score: 56.2 bits (134), Expect = 5.000e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0
Query:   57 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALL 98
            L++ DF +ARVALVPSVPG     HKGKD  +YGH+R+R LL
Sbjct:  202 LKRFDFSSARVALVPSVPGV----HKGKDMEKYGHLRVRKLL 239          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A8K1CIS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIS9_PYTOL)

HSP 1 Score: 55.1 bits (131), Expect = 1.280e-6
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:   49 PFVLGGRTLRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALL 98
            P V   + L + DF TA VAL+PSVPG     H GK  H+YGH+R+RALL
Sbjct:  221 PVVTFCKELSRFDFSTATVALIPSVPGA----HTGKAMHKYGHLRVRALL 266          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: D0MRF5_PHYIT (Tyrosyl-DNA phosphodiesterase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MRF5_PHYIT)

HSP 1 Score: 54.3 bits (129), Expect = 2.530e-6
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 0
Query:   57 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLS 99
            L++ DF +ARVALVPSVPG     HKGKD  +YGH+R+R L S
Sbjct:  202 LKRFDFSSARVALVPSVPGV----HKGKDMEKYGHLRVRNLGS 240          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: W2QLN8_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QLN8_PHYPN)

HSP 1 Score: 53.1 bits (126), Expect = 6.070e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0
Query:   57 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALL 98
            L++ DF TARVALVPSVPG     HKGKD  +YGH+R  ++L
Sbjct:  202 LKRFDFSTARVALVPSVPGV----HKGKDMEKYGHLRSYSIL 239          
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A2V0P8W0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P8W0_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 8.630e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0
Query:   57 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLS 99
            + +HDF +AR+AL PSVPG    RH G    RYGH+R+R+LLS
Sbjct:  375 IARHDFSSARIALAPSVPG----RHTGPALFRYGHLRVRSLLS 413          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LE95_ECTSI1.010e-961.54Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus T... [more]
A0A2P6TZD2_CHLSO2.250e-847.22Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Chlorella ... [more]
A0A6A4E9V0_9STRA2.700e-761.36Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Phytophtho... [more]
A0A225WPR3_9STRA3.920e-761.90Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora... [more]
A0A833TKC6_PHYIN5.000e-761.90Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora... [more]
A0A8K1CIS9_PYTOL1.280e-654.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MRF5_PHYIT2.530e-660.47Tyrosyl-DNA phosphodiesterase, putative n=1 Tax=Ph... [more]
W2QLN8_PHYPN6.070e-659.52Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A2V0P8W0_9CHLO8.630e-655.81Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010347Tyrosyl-DNA phosphodiesterase IPFAMPF06087Tyr-DNA_phosphocoord: 56..99
e-value: 2.7E-5
score: 23.2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 54..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..35
NoneNo IPR availableTMHMMTMhelixcoord: 35..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6261contigL-elsbetiae_contig6261:6741..7043 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6261.14868.1mRNA_L-elsbetiae_contig6261.14868.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6261 6605..8202 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6261.14868.1 ID=prot_L-elsbetiae_contig6261.14868.1|Name=mRNA_L-elsbetiae_contig6261.14868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MNGLGFPSRVPEEPPTSETLPQPLRASNRIASRPNLSFPGVLILFVPLPF
VLGGRTLRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010347Tdp1