mRNA_L-elsbetiae_contig6246.14847.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6246.14847.1
Unique NamemRNA_L-elsbetiae_contig6246.14847.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 7.240e-121
Identity = 192/221 (86.88%), Postives = 206/221 (93.21%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALPEVPLRIKDKSS 663
            FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLM+AVLFIFVSRLYDVGDRVHIY+G S T+GEEPT+VTVVKVDLMTTVFKRWDEQVFYMPNHLLA KTIVNIQR AHQWHEFMIQVAA+T  +KL AL TSLQ FSKSKDKPEGLY+RMGFSLV IEDSTKLTIRITFRQR NWQNMEKKWACQSMCTWAIK++CD + ISY LPEVP+++K KS+
Sbjct:  914 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSG-SNTQGEEPTNVTVVKVDLMTTVFKRWDEQVFYMPNHLLATKTIVNIQRTAHQWHEFMIQVAATTTPEKLTALQTSLQEFSKSKDKPEGLYTRMGFSLVRIEDSTKLTIRITFRQRGNWQNMEKKWACQSMCTWAIKSACDSLNISYFLPEVPVQMKKKSA 1133
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BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 2.450e-106
Identity = 171/221 (77.38%), Postives = 191/221 (86.43%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALPEVPLRIKDKSS 663
            FVWLSI G DV+SLSVTFASFLIAFSFMIGTAASNLM+AVLFIFVSRLYDVGDRVHIY     T G EP +V VVKVDL TT F+RWDEQ+FY+PNHLLA KTIVNIQR AHQWHEF I VAA+T S+KLE LH +LQ F+K KDKPEGL+ RMGFSL GIEDST+L+IRI FRQR NWQNM+KKWACQSMCTWAIKN+CD +GI+Y LPEVP+ +K+K S
Sbjct:  806 FVWLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIY-DDVQTAGVEPMNVVVVKVDLRTTSFRRWDEQIFYIPNHLLADKTIVNIQRTAHQWHEFYIHVAATTSSQKLETLHDALQKFAKKKDKPEGLHPRMGFSLTGIEDSTRLSIRIIFRQRGNWQNMDKKWACQSMCTWAIKNACDTIGITYYLPEVPIVMKNKIS 1025
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BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 7.790e-106
Identity = 171/221 (77.38%), Postives = 190/221 (85.97%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALPEVPLRIKDKSS 663
            FVWLSI G DV+SLSVTFASFLIAFSFMIGTAASNLM AVLFIFVSRLYDVGDRVHIY     T G EP +V V KVDL TT F+RWDEQ+FY+PNHLLA+KTIVNIQR AHQWHEF I VAA+T S+KLE LH +LQ F+K KDKPEGLY RMGFSL GIEDST+L+IRI FRQR NWQ+MEKKWACQSMCTWAIKN+CD +GI+Y LPEVP+ +K+K S
Sbjct:  947 FVWLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMTAVLFIFVSRLYDVGDRVHIY-DDVQTAGVEPMNVVVTKVDLRTTSFRRWDEQIFYIPNHLLAEKTIVNIQRTAHQWHEFYIHVAATTSSRKLETLHNALQQFAKKKDKPEGLYPRMGFSLTGIEDSTRLSIRIVFRQRGNWQSMEKKWACQSMCTWAIKNACDTIGITYYLPEVPVVMKNKMS 1166
[Close]
BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 5.570e-83
Identity = 154/230 (66.96%), Postives = 167/230 (72.61%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQ---------NMEKKWACQSMCTWAIKNSCDKMGISYALPEVPLRIKDKSS 663
            FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLM+AVLFIFVSRLYDVGDRVHIY+G S T+GEEPT+VTVVKVDLMTTVFKRWDEQ                                             SLQ FSKSKDKPEGLY RMGFSLV IEDSTKLTIRITFRQR NWQ         NMEKKWACQSMCTWAIK++CD + ISY LPE+P+++K+KS+
Sbjct:  962 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSG-SNTRGEEPTNVTVVKVDLMTTVFKRWDEQA--------------------------------------------SLQEFSKSKDKPEGLYPRMGFSLVRIEDSTKLTIRITFRQRGNWQVGQEAIVVVNMEKKWACQSMCTWAIKSACDSLNISYFLPEIPVQMKEKSA 1146
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BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A835YNP7_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP7_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.370e-67
Identity = 105/215 (48.84%), Postives = 153/215 (71.16%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRV-HIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALPEVPL 642
            F+WL I+G D+ +L++TFAS L+  S +IG A++NL A+++FIFV R +DVGDRV H +  G      E  +  V ++DL+ T F+ WDE+V+Y+PNH+LA + I+NIQR+  QWHEF IQV ASTPS+KL  L      F++  +KP G++  + F+L G+E++ +LTIR+ FRQ+ NWQ + +KWA QSMCT  I NSC ++GI+Y  P++PL
Sbjct:   63 FIWLRIFGRDIFALTLTFASVLVGVSVLIGPASANLFASIVFIFVQRPFDVGDRVFHWFPDGRG----EMQNAVVTRIDLLITCFRAWDEKVYYLPNHVLATRPIINIQRSGDQWHEFFIQVLASTPSQKLWELKAKCVEFAEKHNKPSGIHPHIQFALTGVENTNRLTIRVCFRQKGNWQILSRKWAVQSMCTNCIVNSCKELGITYTQPQLPL 273
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BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A835Z0M4_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.150e-43
Identity = 82/210 (39.05%), Postives = 137/210 (65.24%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALP 630
            F+WLSIWG   +S+S+TF+SFL++F+FM G+ A+ L+ +++F+FV+  YDVGDR+ I       +        VVK++L+TTVF+R D Q   MPN LL++  ++N+QR+ + W EF++ V+A+TP  KL +L   +Q F+   +   G+Y ++GF+   I+DS KL +RI  + R NW +++++W   +    AI + C ++GI++  P
Sbjct:  757 FIWLSIWGYQFLSISITFSSFLLSFTFMFGSTATALVESIIFVFVTSAYDVGDRLMI---PDIMQTSRYHGCKVVKINLLTTVFERGDGQSLIMPNKLLSQMALINLQRSGNMWFEFVVGVSATTPLHKLHSLKGRMQKFAN--EDSSGIYHKIGFTFTEIQDSAKLVVRINVQGRFNWGDVKRRWEVHNATCQAIAHHCAELGITFTPP 961
[Close]
BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.760e-26
Identity = 74/220 (33.64%), Postives = 125/220 (56.82%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKS-----KDKPEGLY-SRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALPEVPL 642
            FV L I G D+ SL +T+ S  +AFSF+ G++AS    +++F+FV++ YDVGD V+       T GE+   VT  +++++TTVF+RWD Q   + N+++AKK I N  R++   H  MI V+  TP +KL+ +   + A  +      +    GL    + + + G+ D  +L++ +  +QR N  NM +++   ++    +   C++ GISY LP  PL
Sbjct:  791 FVALRILGYDIGSLVLTWLSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFV---DDTGGEDWYIVT--RINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKNGIAAGLRRGRHCHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVVCQQRENSANMGRRFGNSNLFHKLLARECNRHGISYTLPAQPL 1005
[Close]
BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A0L0H4I0_SPIPD (EF-hand domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H4I0_SPIPD)

HSP 1 Score: 114 bits (286), Expect = 1.090e-25
Identity = 68/193 (35.23%), Postives = 107/193 (55.44%), Query Frame = 1 
Query:   52 FASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALP 630
            F SF++A SF+ GTAA     ++LF+F++  YD GDRV I          +  ++ V +V ++TTVFKR D Q+ Y PN L+A K I N++R+  Q     +Q+   TP +KL AL   +  F KS+  P          +  IE+  KL + +  + + NWQ+  K+W  ++M  +A+K +  ++GI YA P
Sbjct:  721 FTSFILALSFVFGTAARTAFESLLFLFLTHPYDAGDRVVI----------DNQNLLVEEVGVLTTVFKRLDGQLIYAPNTLVASKLIHNLRRSGDQSESIELQLNFDTPEEKLRALKERMIDFVKSE--PREFQGVCDIHISEIENLNKLKVNVILKHKGNWQDGSKRWNRRTMFMFALKKNLLELGIRYATP 901
[Close]
BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.150e-25
Identity = 70/225 (31.11%), Postives = 126/225 (56.00%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYS----RMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGISYALPEVPLRIKDKSS 663
            FV+L I+  +++ L VT+ S ++AFSF+ G++A+N   + +FIFV+R YDVGDRV+I       +  +  +  V +++++TTVF+RWD+    +PN  LAK+ I N++R+        + V+ +TP  KLEAL   +Q ++++   P  LYS     + +    +   T + +   + Q+ +WQ+   K     + +  +   C ++G+ YALP   + +K   S
Sbjct:  920 FVFLWIFDQNILGLGVTWVSLVVAFSFLFGSSAANFFESCVFIFVTRAYDVGDRVYI-----KDELNDEANYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSGDGVMLMTLLVSIATPRAKLEALKERMQEYARAVTGP--LYSCDPNSVDYCCRRVISCTNMEVFFVYSQKGSWQDNYLKVKNFHLMSLRLAEVCHELGLEYALPTQGVTLKTPHS 1137
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BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Match: A0A058ZGC3_FONAL (EF-hand domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZGC3_FONAL)

HSP 1 Score: 113 bits (283), Expect = 3.070e-25
Identity = 66/205 (32.20%), Postives = 115/205 (56.10%), Query Frame = 1 
Query:    1 FVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKVDLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPSKKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRANWQNMEKKWACQSMCTWAIKNSCDKMGI 615
            F +L I+G ++ S  V  AS +++ SF+ G +A  +   V+++FV   YDVGDRV I          +  +  V ++++  TVF+RWDEQ F++PNH+L  K ++NI+R+ +Q H F + + A T S++L  L   +Q + +S+  PE     + F L  ++   ++ + IT  Q +NWQ+   +W  ++        SC ++GI
Sbjct: 2073 FAFLLIFGTNIESTVVPVASLIVSMSFIFGHSAQRMFDNVIYLFVEHPYDVGDRVFI----------DDHNFIVARMNITATVFRRWDEQYFWIPNHILTDKVVINIRRSGNQRHTFYMFLDADTTSEQLGTLRGMMQGWVESQ--PERFARDVDFILFDVDTHGRMQMLITIGQLSNWQDGAVRWKNRTDSWLFFLQSCRELGI 2265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6246.14847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX37_ECTSI7.240e-12186.88Small Conductance Mechanosensitive Ion channel n=1... [more]
D7FX36_ECTSI2.450e-10677.38Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JBC1_9PHAE7.790e-10677.38EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JDS1_9PHAE5.570e-8366.96EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YNP7_9STRA1.370e-6748.84Mechanosensitive ion channel-domain-containing pro... [more]
A0A835Z0M4_9STRA3.150e-4339.05Mechanosensitive ion channel-domain-containing pro... [more]
A0A6H5JSR3_9PHAE1.760e-2633.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0H4I0_SPIPD1.090e-2535.23EF-hand domain-containing protein n=2 Tax=Spizello... [more]
A0A835YNU8_9STRA1.150e-2531.11Mechanosensitive ion channel-domain-containing pro... [more]
A0A058ZGC3_FONAL3.070e-2532.20EF-hand domain-containing protein n=1 Tax=Fonticul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6246contigL-elsbetiae_contig6246:1865..7770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.7
Seed ortholog evalue2.8e-89
Seed eggNOG ortholog2880.D7FX37
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons5
Model size669
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.0396855-UTR-L-elsbetiae_contig6246:1864..19451622816686.0396855-UTR-L-elsbetiae_contig6246:1864..1945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6246 1865..1945 +
1691683739.5157125-UTR-L-elsbetiae_contig6246:1864..19451691683739.5157125-UTR-L-elsbetiae_contig6246:1864..1945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6246 1865..1945 +
1622816686.124009-UTR-L-elsbetiae_contig6246:7767..77701622816686.124009-UTR-L-elsbetiae_contig6246:7767..7770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6246 7768..7770 +
1691683739.6044807-UTR-L-elsbetiae_contig6246:7767..77701691683739.6044807-UTR-L-elsbetiae_contig6246:7767..7770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6246 7768..7770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.0501099-CDS-L-elsbetiae_contig6246:1945..21341622816686.0501099-CDS-L-elsbetiae_contig6246:1945..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 1946..2134 +
1691683739.5384374-CDS-L-elsbetiae_contig6246:1945..21341691683739.5384374-CDS-L-elsbetiae_contig6246:1945..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 1946..2134 +
1622816686.060731-CDS-L-elsbetiae_contig6246:2619..27091622816686.060731-CDS-L-elsbetiae_contig6246:2619..2709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 2620..2709 +
1691683739.5520942-CDS-L-elsbetiae_contig6246:2619..27091691683739.5520942-CDS-L-elsbetiae_contig6246:2619..2709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 2620..2709 +
1622816686.0732021-CDS-L-elsbetiae_contig6246:4456..45411622816686.0732021-CDS-L-elsbetiae_contig6246:4456..4541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 4457..4541 +
1691683739.5636272-CDS-L-elsbetiae_contig6246:4456..45411691683739.5636272-CDS-L-elsbetiae_contig6246:4456..4541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 4457..4541 +
1622816686.0874522-CDS-L-elsbetiae_contig6246:6155..62501622816686.0874522-CDS-L-elsbetiae_contig6246:6155..6250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 6156..6250 +
1691683739.5780756-CDS-L-elsbetiae_contig6246:6155..62501691683739.5780756-CDS-L-elsbetiae_contig6246:6155..6250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 6156..6250 +
1622816686.1102173-CDS-L-elsbetiae_contig6246:7641..77671622816686.1102173-CDS-L-elsbetiae_contig6246:7641..7767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 7642..7767 +
1691683739.5952892-CDS-L-elsbetiae_contig6246:7641..77671691683739.5952892-CDS-L-elsbetiae_contig6246:7641..7767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6246 7642..7767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6246.14847.1prot_L-elsbetiae_contig6246.14847.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6246 1946..7767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6246.14847.1

>prot_L-elsbetiae_contig6246.14847.1 ID=prot_L-elsbetiae_contig6246.14847.1|Name=mRNA_L-elsbetiae_contig6246.14847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MIGTAASNLMAAVLFIFVSRLYDVGDRVHIYAGGSATKGEEPTDVTVVKV
DLMTTVFKRWDEQVFYMPNHLLAKKTIVNIQRAAHQWHEFMIQVAASTPS
KKLEALHTSLQAFSKSKDKPEGLYSRMGFSLVGIEDSTKLTIRITFRQRA
NWQNMEKKWACQSMCTWAIKNSCDKMGISYALPEVPLRIKDKSS*
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mRNA from alignment at L-elsbetiae_contig6246:1865..7770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6246.14847.1 ID=mRNA_L-elsbetiae_contig6246.14847.1|Name=mRNA_L-elsbetiae_contig6246.14847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5906bp|location=Sequence derived from alignment at L-elsbetiae_contig6246:1865..7770+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTGTGGCTGTCGATCTGGGGAGCGGACGTCGTGTCCCTCAGCGTGAC
CTTCGCCTCCTTCCTCATCGCCTTCTCCTTCATGATCGGGACCGCGGCCT
CCAACCTCATGGCGGCGGTGCTCTTCATCTTCGTGTCGAGGCTGTACGAC
GTGGGGGACAGGGTGCACATCTACGCCGGCGGCAGCGCGACGAAGGGCGA
GGAGCCCACGGACGTGACGGTCGTCAAGGTGGACCTGATGACCACCGTCT
TTAAGCGCTGGGACGAGCAGGTGTGCGTCCGCCGTGTGTGTGTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTGTTCTTCTTCACATTGCATAGCTCGTGT
AATCGAGATTGCTACATAATCACAAAAAATCTAGCAACTCGCGGCCTGTG
TGTGTTTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTATGTTCATGCGTG
CGTGCGTGCGTGCGTGTCTGTGCGTGTCTGTGTGTGTATGTGTAGGTGTC
CGTGTGTGTCTGCGTGTGCGTTGTTGTTGTTGTTGTTGTTTCTCACATTA
GCTCTCTATTGCAAAACATCCTTCCGGGGCCCGTGATCACAGAACAAGGC
ACACTCGACGCCGCGGAAGAAAGATAAAGTGTGTGTGTGTGTGTGCGTGT
GGGTCTGTGTGTGTGTCTCTGTGTGTGTGTCCGTTTAGTATGGTGAGTGG
TGCTCCGCGCAGCTGTCGACTCGGCTCCCCCACGCTCTCGCCTGTTGTGT
GGTAGGTGTTCTATATGCCGAATCACCTGCTCGCGAAGAAGACGATCGTC
AACATACAGCGAGCGGCGCACCAGTGGCACGAGTTCATGATCCAGGTGTC
GTGTGTCGTGTGTCGTGAAGTGCGGTCTGGTGCGGAACGTGCGCGCCTGT
TTCGACGGGTGCTCTCAGCCGTCGGAGCAAGCATGTGATGTAGTTCGAAG
TACATATATAGAGATGAAATATCCCAGCAGGCAGATACATACCGCAGTCG
GCTGAATCCCCCCCCCCCCCCCAAGGGCGAGGATTTTCTTTTCGTGAAGA
TCAAAACCGCCCCGCCGGGGGCATCGAAAGGAAGGCAGAGAGAAGACGNN
NNNNNNNNTTTTTTCCCCAAAGGCCGCCCAGCTGTATTTTTCCCACCCGT
GTTGGCGTCCCACCCGGTGTGGGCCACGGTTGCCCCCCCCCCCCCCCCCA
GGAAGGGGATTTTTTCTTCGTGAAACTGTACCCCCCCCCCGAGGGGAGAA
ATTCGAGACAGGGGTGGTGTTGTTTGAAGTCAACACCCCCGGGAAGAAAT
CTATCCAGGGAAAAAGAAAAAAACTCCACACGGCCACCATACACAGACAC
ACAGACACACACACAGACACAGACACAGACACACACACACACACACACAC
ACACACACACACACTGCTTCTCCCTGCAGTGGACACAGCGTGTGAGGAAG
CGTTCGGGAGAAAAAGGGAGGGTGGCTCTGTTTGTATTGATAAAAGAGTA
CGAAGTTGCGTATCTGGCAAATCGGCGCAGTTTTCTTTGCCGGGGCAGCA
CCGGGGTGGGGTGTTGTTCAGTGCGGGGGGTGCACGCAATGTTTTTGCAG
GTGGTGGTGGGAAAGGCCGAAAGGAAATGTATGTACATAGGTAGCACATA
CATACACATGTATGCACTTCAATTTGCTCAAAAGGCTCGCGATGGCATAT
TCCGTGTTGGTGGGCATGACTTTGACTTTGACGCAAGCGATCACATGCGA
CGCGACCGCCGTATTTACACATCTGACAAACGGCGGTACACACATGGCAT
TTCAGCTTGAATACATTTGGCACCCACTGCCGAAACCAGAAGACTCTACG
CATTCCACCCCCCAAAAATGCTCCAGGGTGGCGTTGTGAGCAATATGTTC
CTGCCGCTCAAGCCGAAATTTTTTAATGTGAAGACAACATACACACATAC
AAGCCGAAAAATACAAAAATACCCCCCCAACCCCCGTAGTGAGGGTGACC
TAAAAAATACAACCCCGGGGGGAGACTCAAGGGGGGGGGGGGGATACATT
TATTTTCTGAAAACAAAATCCCCCCCGGGGGGAAATCAAAGAAATTGTGT
TTTTTGCCCAAAAAGGTGATGGGGGGAGGGAGGGGATCTCATTACCCCGG
GGGGGGATCTCAGCCGATGGGGGTAGCACGCCTTCGGCATACTTTCAAAT
ACGTGCCATAGGGCGGGAGGGGGATCATTTTTCTTTGTGGATGCCCTCTC
TCTCTCTCTCTCTTCGTATTCCTCTCCCTCTCTCTCTCTTCGTATTCATC
TCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTTTCTC
TCTCTCTCTTTCTCTCTCTCTTTCTCCCTCTCTCTTTCTCTCTCTCTTTC
TCTGTCTCTCTCCCTCTCTCTCTCCTTCTTCCTTCGTTTCGCCTTTTAAA
TCGGACGTCCAAGCCTCCGCGTTAATTTCCCAGGCGGCTCGTGCTGCTGA
CACTGCTTGCTGCTCACGGTTAAGTGCCGGTCCCTCTGCATCCCCTCTGA
CCCCCGTTTCGCGCGCGCGTGTGTGCGTGTTTGTGTGTCCAGGTTGCGGC
CAGCACGCCGTCCAAAAAGCTCGAAGCCCTGCATACCTCTCTGCAGGCGT
TCTCCAAGAGCAAGGACAAGCCCGAGGGTGAGTTTTGTGTTGTTTTTTCG
TCGACGGTGAGAGGTCGAAGGTTAGGGTGAGTGTGAGTCGTCAATACCGT
CTGGTGGTGATGGGGTCGTTGGTTTCGGCTGTCGTGCAGATGGATAGATA
GAAGTATGCACATCTATCTGTGCATGTACGGGACGGGCCACGACCTGACA
ACTTAAAAGAGTCGAGGTATGTTTTCAGACCCGAAAAATTCAAAACACAA
AATGTCGCCCATATTGGAAATAGATTTCGCCCGGATAAGAGCCTCTAAAC
TAAAATCTACACCGCCTGTGTGTAAGGCGGCTGGTTTCCCCACCAAAGAA
CCAAGAGCCTGAGCGTCGCTCAAAAGTAGCAGAAGGTGGTCCGTTCAGCG
GCGTTGATGCGCGCTTATCCCGGTTGGATAGCGCTGGGTTAGGTGGCGTG
TCTGCGCTGGCATTGTTGCGGCGCCGTTGGTGGTGGTGGTGGTGGTGTGG
CAGTCTTCTTTGATTGTGGACGTGGCCACTTGTAGTGGTTCGTTCTCGCG
CCCCTTTTAATTAACATACAAATGTCAGCCGTCTACATACGTCCAGTCTG
CGAAAAAGTCGTTCCAGAAGGACTACTACTACCTGTTGTAGGCATAATAA
CTCCCCCTTTTCCCGTCCAAGCTATATTTACTCGCACAAAATTCGCAATC
CATACATGCATACAGTTAGCTCGTTGGTGAAAAATCCCTTTCAGGCAACA
CCGTTATGTGTCCGCTCGCGCGGACAAACAAAGCCCCTCTTGTACCTATA
GTCTTTATTCCTTCTCTCCCCGAAAGGCGTGGCCCCCGTAGAGCCCGGAA
TGTGGTTGGGATGTGTTGTTTGGAGCCCGGGCGTGGTGGCCAGTTCAGCA
GTACTATTGTAAAGGGATGGGTTTGAGTTTGAAGAGTAGTAGAGTGAAGG
GCACCACCCAAAATGGGCGTGCGTGTAGATAGATCAAGGAACATTATTTT
TTCTGGTGGAAAAAAAGACGCGTCTCCCGTGTGTTGCAACGCGTTCGTTC
GCTCGTGGGGCGGCCCCGTCATCAATCACCCCCCCCCCCCCCCCCCGCCC
CGTACGCTTTTGGTGAGGTTATTTGTTTGTGTGTTAGGAGTACTTATTTT
GAGACTTTTACCCTCCCCCTTTGAATCGTTTTAGAACTGCTGTGTTGCTG
TTTTCTTCTGATGAAAAATCTGCCTGCCGGCTTGCGTGCACTTTTTGAAA
GGAAAAAGAGTCAAATCAATAATGGAACTCAACCCACATTGAGACGGGAC
TCCGTGAGATTCGATCGGTATTCCATTTATGTAGTGACGTAATATTGGGC
CGGCCGACCGAAAAGAAAATCCCCAACCCCCAAAAATATAAGAACTATTT
TTCACCATCTCCCCCCCCCTCCAAAAGTCTCTGCCAGGTCAAACAACACG
CACATATTCCGGGGAGAAATAAATCCCCGTGTGATGTCGTGATGCTGTCA
ACTACTTCTATGATACACCTAGGGAACAACACCTTTTGTTTCTATGACTG
CTGTTTTGGTCGTTTTTTTGGTTGCTCGCCATCGTGGCGATCGATCGGCC
TGCCCACGCCACGCCACGCCACGCCACGCCCCACGAAACAGGGCTCTATT
CGCGCATGGGGTTCTCGCTGGTGGGCATCGAGGACAGCACCAAGCTGACC
ATCAGGATCACCTTCCGCCAGAGGGCTAACTGGCAGGTGCGTGGTGGGTG
TGTGAAGGGTGGTGGCAAGGGTCGGCGGGCATCTTGTATCCTTGCGACGG
AGACGTTTGTCCGCCTTTGTGTTGAATAGCCCTGTGCGGGCAGTTATATA
GTTGCCACGGTAACTACCGTAATCATGCGAAGGTTCGCACCCCCGTGTTA
GCATTTTTCTAAAGCGTATTCCTCCACAACCAGGAGGGCATGCGAAGTTT
CGCACCCCCGTGTGAGCGTTTTTCTATAGCGTATTTCTCCACAACCAGGA
GGGTACCACTGCCGAAAAGGGTGGTTCTCGAAACGTCTCGTCGGGGGCTT
TCCAGAGAGGTACCATCAGTTAGTGTTCGCACCCTCCTGGTTGTGGAGGA
ATACGCTTTAGAAAAATGCTAACACGGGGGTGCGAACCTTCGCATGATTA
CGGTACTTCGAAGTAGGTGGGGGGGGCGGGCGGCAGGGCGGCAGGGCACC
GTCGGGTTATGACTGAGCGCCTGCCTGCCTCTGGGTCAGAATCCATGCTG
AAAAAGTGGCGATGCACTTGCTCCCTCCCGATGTCAGGCGAATAGCGATA
TAAGCCGAGAGCGGCCAGCAGCATCATAAGATTGCGTTCAACGCTTGAAC
TTCAATTTTCTACCGTTGTCTGGAGCGGTACATCCTTTTATTACTCACTC
TTCTTGCGATGGGCACACCGGCCCTTGGCGCGGCAGAGACTTAAGGCGGA
CAGTTGTGGTGGGTAGGCTGCTGGCAGGAACGAAGCCTGCGCTCGTGTGC
GGTTCATGGCTTGCAGTACGTAGAAGTACGCTGGGGAGGGGGGGCGGCCT
GGATGACTTCGTTGCACAGCGAAGCGGCAGATGCAGCGGGTGGCTATAAG
CTGGGGTCCAAAGAATAACACACCTACCTCTACTATTTAGGCAAGACCAT
TTCTATTCGCGGCATTTTTTTTCCCTCTCTTCTCAGATTGCGAAAGTTCC
CAGGAAGCTTAACATATACTTTGACTTTCTGTTCCCTTGCGGTTTATAGC
GACGGGTATCGTGTTCACCTGCGACGTGCAGTAGGCTTCAGCCGGGTAGG
TTTGTTACATATCTTATTCGCTTTTTCGCGCGCACTGGGAGAGGGGCATG
GAGGACTTCGTTGCGCAGGCGGAAACTTGAAAACCTCGCCCGCGGCGGTC
GGGCAAGCGGGGCAACCTCTTCTACCACGCGGCGTTGCCTGCGCCGACTC
CCCGCGTTCAGAGTTAGTGACAAATGTACCAGTGGTGTGCCCCAGCTATA
CAGCCCCCTCCTACGTACGTACCCCCTCTCCATGCACAAACAAACGCACT
TTTTCGTACTTTTGTCTTGTTCTTCTCGTGTTTTGAATTTATGTCGTGCT
CGACCGCCAAATCGGCCATCCGACCAGAACATGGAGAAGAAGTGGGCCTG
CCAGAGCATGTGCACCTGGGCGATCAAGAACTCCTGCGACAAGATGGGCA
TCTCCTACGCCCTCCCGGAGGTTCCCCTTCGCATCAAGGACAAGTCGTCA
TGAGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6246:1865..7770+

>mRNA_L-elsbetiae_contig6246.14847.1 ID=mRNA_L-elsbetiae_contig6246.14847.1|Name=mRNA_L-elsbetiae_contig6246.14847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig6246:1865..7770+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGGGACCGCGGCCTCCAACCTCATGGCGGCGGTGCTCTTCATCTT
CGTGTCGAGGCTGTACGACGTGGGGGACAGGGTGCACATCTACGCCGGCG
GCAGCGCGACGAAGGGCGAGGAGCCCACGGACGTGACGGTCGTCAAGGTG
GACCTGATGACCACCGTCTTTAAGCGCTGGGACGAGCAGATGATCGGGAC
CGCGGCCTCCAACCTCATGGCGGCGGTGCTCTTCATCTTCGTGTCGAGGC
TGTACGACGTGGGGGACAGGGTGCACATCTACGCCGGCGGCAGCGCGACG
AAGGGCGAGGAGCCCACGGACGTGACGGTCGTCAAGGTGGACCTGATGAC
CACCGTCTTTAAGCGCTGGGACGAGCAGGTGTTCTATATGCCGAATCACC
TGCTCGCGAAGAAGACGATCGTCAACATACAGCGAGCGGCGCACCAGTGG
CACGAGTTCATGATCCAGGTGTTCTATATGCCGAATCACCTGCTCGCGAA
GAAGACGATCGTCAACATACAGCGAGCGGCGCACCAGTGGCACGAGTTCA
TGATCCAGGTTGCGGCCAGCACGCCGTCCAAAAAGCTCGAAGCCCTGCAT
ACCTCTCTGCAGGCGTTCTCCAAGAGCAAGGACAAGCCCGAGGGTTGCGG
CCAGCACGCCGTCCAAAAAGCTCGAAGCCCTGCATACCTCTCTGCAGGCG
TTCTCCAAGAGCAAGGACAAGCCCGAGGGGCTCTATTCGCGCATGGGGTT
CTCGCTGGTGGGCATCGAGGACAGCACCAAGCTGACCATCAGGATCACCT
TCCGCCAGAGGGCTAACTGGCAGGGCTCTATTCGCGCATGGGGTTCTCGC
TGGTGGGCATCGAGGACAGCACCAAGCTGACCATCAGGATCACCTTCCGC
CAGAGGGCTAACTGGCAGAACATGGAGAAGAAGTGGGCCTGCCAGAGCAT
GTGCACCTGGGCGATCAAGAACTCCTGCGACAAGATGGGCATCTCCTACG
CCCTCCCGGAGGTTCCCCTTCGCATCAAGGACAAGTCGTCATGAAACATG
GAGAAGAAGTGGGCCTGCCAGAGCATGTGCACCTGGGCGATCAAGAACTC
CTGCGACAAGATGGGCATCTCCTACGCCCTCCCGGAGGTTCCCCTTCGCA
TCAAGGACAAGTCGTCATGA
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