prot_L-elsbetiae_contig6229.14822.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6229.14822.1
Unique Nameprot_L-elsbetiae_contig6229.14822.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length153
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6229.14822.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 9.350e-23
Identity = 75/122 (61.48%), Postives = 80/122 (65.57%), Query Frame = 0 
Query:   24 AGGAASSGTADWVLMIQPSYLLTNALPCAMEVEVLQPPLAADGXXXXXXXXVRRERHRSWAGADSGATDPEETDGPGGSWRDAD-SNVSSD-DSDAVSVASSVTS-RQTQQXXXXXXXVATA 142
            A  A SSGTADWVLM+QPSYL+TNALPCAMEVEVLQPP A  G         R ER RSW G  S   D  E D  GG WRD   S+VSSD DSDA S+ASSVTS RQTQQ       VA+A
Sbjct: 3216 AAAATSSGTADWVLMVQPSYLVTNALPCAMEVEVLQPP-AVGGVGGVE----RSERSRSWGGFGSDLADHGEVD-LGGGWRDGGGSSVSSDEDSDAASLASSVTSSRQTQQSEGKATAVASA 3331
[Close]
BLAST of mRNA_L-elsbetiae_contig6229.14822.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.670e-21
Identity = 70/111 (63.06%), Postives = 75/111 (67.57%), Query Frame = 0 
Query:   24 AGGAASSGTADWVLMIQPSYLLTNALPCAMEVEVLQPPLAADGXXXXXXXXVRRERHRSWAGADSGATDPEETDGPGGSWRDAD-SNVSSD-DSDAVSVASSVTS-RQTQQ 131
            A  A SSGTADWVLM+QPSYL+TNALPCAMEVEVLQPP A  G         R  R RSW G+ S      E D  GG WRD   S+VSSD DSDA S+ASSVTS RQTQQ
Sbjct:  958 AAAATSSGTADWVLMVQPSYLVTNALPCAMEVEVLQPP-AVGGVSGVE----RSVRSRSWGGSGSDLAGHGEVD-LGGGWRDGGGSSVSSDEDSDAASLASSVTSSRQTQQ 1062
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6229.14822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2C6_ECTSI9.350e-2361.48C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWU7_9PHAE9.670e-2163.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6229contigL-elsbetiae_contig6229:1516..1974 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6229.14822.1mRNA_L-elsbetiae_contig6229.14822.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6229 1516..1974 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6229.14822.1 ID=prot_L-elsbetiae_contig6229.14822.1|Name=mRNA_L-elsbetiae_contig6229.14822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
LRPRASPSPPPSPSPLTLGGAAVAGGAASSGTADWVLMIQPSYLLTNALP
CAMEVEVLQPPLAADGGAAGGGGGVRRERHRSWAGADSGATDPEETDGPG
GSWRDADSNVSSDDSDAVSVASSVTSRQTQQSESKARAVATATDRAEAVR
VVK
back to top