mRNA_L-elsbetiae_contig6218.14809.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6218.14809.1
Unique NamemRNA_L-elsbetiae_contig6218.14809.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A6H5JJB7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJB7_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 6.400e-72
Identity = 114/122 (93.44%), Postives = 120/122 (98.36%), Query Frame = 1
Query:   28 QVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQG 393
            QVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALA+ASLACSAASICWTWGY LKAKGWRNLGTLAE+DDAQ+RMR SL+MGLYINVAGMLLAL+GAEQIVGTLVAKVLY+QG
Sbjct:  143 QVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALAVASLACSAASICWTWGYNLKAKGWRNLGTLAEVDDAQVRMRGSLRMGLYINVAGMLLALVGAEQIVGTLVAKVLYAQG 264          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A836CL61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL61_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.820e-35
Identity = 71/124 (57.26%), Postives = 90/124 (72.58%), Query Frame = 1
Query:   28 QVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGW--RNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQG 393
            ++ W SWW+QTILSTV+ II+LFSNA+T RS RGN LGNGV LA  ++A + AS+ WTW   LKA  W  RN    +   +AQ  +  +LK+G++IN+ G L AL+GAEQIVGTLVAKVLYS G
Sbjct:  106 RLGWFSWWSQTILSTVSAIIILFSNAITERSVRGNALGNGVFLAGLAVASAGASMFWTWTLILKATAWVGRNEKKRSTPTEAQRNIIRALKVGVWINLLGALFALVGAEQIVGTLVAKVLYSGG 229          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A7S2V450_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V450_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.190e-26
Identity = 60/121 (49.59%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   28 QVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQ 390
            +++W+SWW Q IL+TVA +IL F+ AVT+   R N L NG  LA   +     SI WTWG    A+ W+   T  +LD A   M N LK  + IN+ GML+AL+GAEQIVGTLVAK+L +Q
Sbjct:   90 RIAWISWWTQVILTTVAGVILFFTTAVTDPG-RANFLVNGTFLAGCGVTLGLISIFWTWGIARAARRWKRRST--DLDQACASMGNRLKAAVLINLMGMLVALVGAEQIVGTLVAKILQTQ 207          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A7S3XU47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU47_HETAK)

HSP 1 Score: 105 bits (262), Expect = 1.210e-24
Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   34 SWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQG 393
            +W SWWAQ ILSTVA +IL F++A+T+   R N+  NG  LA   +     S  WTWGY   AK W+  G  A+L+  Q  M   L+ G ++N  GM +AL GAEQIVGTLVAKVL +QG
Sbjct:  109 AWTSWWAQVILSTVAGVILFFASAITDP--RVNMFMNGTLLAGCGVFFGLVSTFWTWGYASAAKRWKRPG--ADLEKLQRAMLRRLEFGHFVNTLGMAVALTGAEQIVGTLVAKVLSAQG 224          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A0M0JU81_9EUKA (Copper uptake transmembrane transporter n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU81_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 2.780e-19
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   31 VSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGWRNLG--TLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYS 387
            + W+SWW+Q ILST++ ++LLF+N VT R     ILG   AL L  L  + AS  WT  Y   A   R LG  T    +DA  R  N   +G ++N+ GM+L L+GAE IVGTL AK L S
Sbjct:   20 IGWVSWWSQAILSTISAVLLLFANTVTVRPTALTILGR--ALTLGGLVAAIASTLWTVAYGRLA---RRLGRATPPTAEDAAERAANIATVGTWLNIVGMVLCLLGAEAIVGTLAAKALQS 135          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: L1JCY2_GUITC (Translocon at the inner envelope membrane of chloroplast 21 like protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCY2_GUITC)

HSP 1 Score: 87.0 bits (214), Expect = 1.120e-18
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   28 QVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRN---SLKMGLYINVAGMLLALIGAEQIVGTLVAK-----VLYSQGEG 399
            Q SWLSWWAQ ILS ++ I L F+NAV     +GNIL NGV +A   LA S  ++ WT GY       R      E  +A +  R+   ++++G+ + + GM L L+GAEQIVGTLVAK     +L + G G
Sbjct:    3 QSSWLSWWAQVILSVISAITLFFANAVRGPM-QGNILANGVFMAGLGLALSFINVIWTTGYQ------RIAAKQLETPEAAMSFRSFSRTVRVGVIVALTGMFLTLLGAEQIVGTLVAKSISGSILIANGGG 127          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A7S1XJJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJJ2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.190e-18
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   28 QVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVA----LALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQG 393
            +  W SWW QT+L+ +A I LLF+      +     + +G A    LA   ++ SA S+ WTWG+T  A+  R    L    +A+L +R +L+ G+ +N+ GM   L GAEQIVGTLVAKVL  QG
Sbjct:   28 RAGWTSWWIQTVLTVIASITLLFARTFAAAAGGSTAIQSGGAGGLFLAGLGVSLSALSVFWTWGFTRVARRLRKGEDLTPRLEARL-IRRALRTGIVLNLVGMFATLFGAEQIVGTLVAKVLSFQG 152          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A4D9D048_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D048_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.630e-18
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   34 SWLSWWAQTILSTVAFIILLFSNAVTNRSARG------NILGNGVALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQG 393
            +W SWWAQ I +TVA +IL F+N+    S  G      +I  NG   A + L   A SI WTWG+T  AK  R    + E   +   +R  ++  + IN+ G+L ALIGAEQ VG L+A+VL  QG
Sbjct:  105 AWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAASGLCLGAISIFWTWGFTGVAKRIRR--AVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQG 228          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A7S0GKD1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKD1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.140e-18
Identity = 51/120 (42.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   34 SWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQG 393
            SW SWW Q ILSTV+ + LLF+ +V      G   G    LA + +  S  S+ WTWG    +K      +   +  A L  RN + +GL +N+ GM L L+GAEQIVG L AKVL  QG
Sbjct:   32 SWFSWWTQVILSTVSGVTLLFARSVLMSGIEGKKRGAEFILAGSGIVLSIISVFWTWGGARISKRLMRRPSTTRIKAANLLRRN-ISVGLTLNLLGMFLTLLGAEQIVGMLAAKVLTQQG 150          
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Match: A0A8J5XCA0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCA0_DIALT)

HSP 1 Score: 81.6 bits (200), Expect = 3.390e-16
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   34 SWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMGLYINVAGMLLALIGAEQIVGTLVAKVLYSQGEG 399
            SW SWW Q ILS V+ + L F+NA    +   N L +G+ L+ A + C   S  W WGY   AK  R L    +L     + R SL++G+ IN+ GM L LI AEQ +G L  K L +QG G
Sbjct:   75 SWFSWWGQVILSVVSTVTLTFANAARGST---NPLLSGIVLSTAGVLCGFVSTFWMWGYQGFAK--RLLRADVDLTQLATQARRSLRLGISINLVGMALTLISAEQTIGVLAGKAL-TQGLG 190          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6218.14809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJB7_9PHAE6.400e-7293.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CL61_9STRA3.820e-3557.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V450_9STRA2.190e-2649.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XU47_HETAK1.210e-2450.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A0M0JU81_9EUKA2.780e-1945.45Copper uptake transmembrane transporter n=1 Tax=Ch... [more]
L1JCY2_GUITC1.120e-1843.18Translocon at the inner envelope membrane of chlor... [more]
A0A7S1XJJ2_9STRA4.190e-1841.27Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D048_9STRA4.630e-1842.06Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S0GKD1_9STRA6.140e-1842.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A8J5XCA0_DIALT3.390e-1641.80Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6218contigL-elsbetiae_contig6218:8277..9308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue4.4e-12
Seed eggNOG ortholog2903.EOD28271
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006873,GO:0006875,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0019725,GO:0019866,GO:0030003,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042170,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045037,GO:0045184,GO:0046907,GO:0046983,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055065,GO:0055080,GO:0055082,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072596,GO:0072598,GO:0098771
EggNOG free text desc.Protein of unknown function (DUF3611)
EggNOG OGs28KUA@1,2QTAI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionChloroplast inner membrane protein TIC 21
Ec32 orthologEc-12_006410.1
Exons2
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.969661-CDS-L-elsbetiae_contig6218:8276..84901622816682.969661-CDS-L-elsbetiae_contig6218:8276..8490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6218 8277..8490 -
1691683737.2586336-CDS-L-elsbetiae_contig6218:8276..84901691683737.2586336-CDS-L-elsbetiae_contig6218:8276..8490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6218 8277..8490 -
1622816682.9827752-CDS-L-elsbetiae_contig6218:9111..93081622816682.9827752-CDS-L-elsbetiae_contig6218:9111..9308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6218 9112..9308 -
1691683737.274136-CDS-L-elsbetiae_contig6218:9111..93081691683737.274136-CDS-L-elsbetiae_contig6218:9111..9308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6218 9112..9308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6218.14809.1prot_L-elsbetiae_contig6218.14809.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6218 8277..9308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6218.14809.1

>prot_L-elsbetiae_contig6218.14809.1 ID=prot_L-elsbetiae_contig6218.14809.1|Name=mRNA_L-elsbetiae_contig6218.14809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MKPLRCTPPQVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGV
ALALASLACSAASICWTWGYTLKAKGWRNLGTLAELDDAQLRMRNSLKMG
LYINVAGMLLALIGAEQIVGTLVAKVLYSQGEGGRT*
back to top

mRNA from alignment at L-elsbetiae_contig6218:8277..9308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6218.14809.1 ID=mRNA_L-elsbetiae_contig6218.14809.1|Name=mRNA_L-elsbetiae_contig6218.14809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig6218:8277..9308- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACCGCTTCGTTGCACACCACCGCAGGTGAGCTGGTTGTCGTGGTG GGCGCAGACGATCCTGTCGACCGTGGCTTTCATCATCCTGCTGTTTTCCA ACGCCGTCACCAACCGCTCCGCCCGCGGCAACATCCTGGGGAACGGAGTC GCGCTGGCGCTGGCCAGCCTGGCTTGCTCGGCCGCGAGCATTTGTTGGTG AGACCGCCCACGTGTTCGCGACAACTTAACCCCTTCGAAGGGTCCAAAGG AGGGGGGACACTTGTAACGCAGAACATCATGACGACATGTATGTAGAAGG TAGGACGCGTGTTCTCCTTCGGACTTGTGAGGTTCAGGCAAGGCACAAGT AAGTGCCTTGGAAAGCCTGACGTCCCCGCCCCGGATTCAATTGCTGCGAC ATGCATACGCATATACAACGTACCTTCTACATGCATGCATACACACATAC ATACATACATACATACATACATACTTCGAATGTACATGTTTTATGTTTTG TTTTTCTTCAGCGGCGTCGAGTGTGTGCCCCCTTAAGTGTTTTTGTGACC ACGGGGCCCCCATGGGTGTTTTTTAGACTAGATAGCTAATATGAGAAACA ACTACTACTACTACTACTACTACACATACTACGTAAATACATGCATCACG GATGTTCGACACCCGACTGGAAGAACGACTTGCGGTTCCCATTGCCCGCC ACTCTGGCGCGGACCACCCACATCCATCATGCAGATGAACTCACCCCGCG CTCTTTTCGTACATATACCTACGCATACGAGCAAAATGATCCACACACGA CTTTTGGCGAACCCACAGGACGTGGGGGTACACCCTGAAAGCGAAGGGTT GGAGGAACCTGGGGACCCTGGCCGAGTTGGACGACGCGCAGCTGCGCATG CGGAACTCGCTGAAGATGGGGCTGTACATCAACGTGGCGGGCATGCTCCT GGCTCTCATCGGGGCGGAGCAGATCGTGGGCACACTGGTGGCCAAAGTTT TGTATTCCCAAGGTGAGGGAGGGAGGACCTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6218:8277..9308-

>mRNA_L-elsbetiae_contig6218.14809.1 ID=mRNA_L-elsbetiae_contig6218.14809.1|Name=mRNA_L-elsbetiae_contig6218.14809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig6218:8277..9308- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACCGCTTCGTTGCACACCACCGCAGGTGAGCTGGTTGTCGTGGTG
GGCGCAGACGATCCTGTCGACCGTGGCTTTCATCATCCTGCTGTTTTCCA
ACGCCGTCACCAACCGCTCCGCCCGCGGCAACATCCTGGGGAACGGAGTC
GCGCTGGCGCTGGCCAGCCTGGCTTGCTCGGCCGCGAGCATTTGTTGATG
AAACCGCTTCGTTGCACACCACCGCAGGTGAGCTGGTTGTCGTGGTGGGC
GCAGACGATCCTGTCGACCGTGGCTTTCATCATCCTGCTGTTTTCCAACG
CCGTCACCAACCGCTCCGCCCGCGGCAACATCCTGGGGAACGGAGTCGCG
CTGGCGCTGGCCAGCCTGGCTTGCTCGGCCGCGAGCATTTGTTGGACGTG
GGGGTACACCCTGAAAGCGAAGGGTTGGAGGAACCTGGGGACCCTGGCCG
AGTTGGACGACGCGCAGCTGCGCATGCGGAACTCGCTGAAGATGGGGCTG
TACATCAACGTGGCGGGCATGCTCCTGGCTCTCATCGGGGCGGAGCAGAT
CGTGGGCACACTGGTGGCCAAAGTTTTGTATTCCCAAGGTGAGGGAGGGA
GGACCTAGGACGTGGGGGTACACCCTGAAAGCGAAGGGTTGGAGGAACCT
GGGGACCCTGGCCGAGTTGGACGACGCGCAGCTGCGCATGCGGAACTCGC
TGAAGATGGGGCTGTACATCAACGTGGCGGGCATGCTCCTGGCTCTCATC
GGGGCGGAGCAGATCGTGGGCACACTGGTGGCCAAAGTTTTGTATTCCCA
AGGTGAGGGAGGGAGGACCTAG
back to top