mRNA_L-elsbetiae_contig117.1477.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig117.1477.1
Unique NamemRNA_L-elsbetiae_contig117.1477.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig117.1477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig117contigL-elsbetiae_contig117:36676..41543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size601
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig117.1477.1prot_L-elsbetiae_contig117.1477.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig117 36869..41543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.409355-UTR-L-elsbetiae_contig117:36675..368681622815372.409355-UTR-L-elsbetiae_contig117:36675..36868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 36676..36868 +
1691682866.661862-UTR-L-elsbetiae_contig117:36675..368681691682866.661862-UTR-L-elsbetiae_contig117:36675..36868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 36676..36868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.4202-CDS-L-elsbetiae_contig117:36868..371861622815372.4202-CDS-L-elsbetiae_contig117:36868..37186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 36869..37186 +
1691682866.6708229-CDS-L-elsbetiae_contig117:36868..371861691682866.6708229-CDS-L-elsbetiae_contig117:36868..37186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 36869..37186 +
1622815372.430765-CDS-L-elsbetiae_contig117:41453..415431622815372.430765-CDS-L-elsbetiae_contig117:41453..41543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 41454..41543 +
1691682866.6796858-CDS-L-elsbetiae_contig117:41453..415431691682866.6796858-CDS-L-elsbetiae_contig117:41453..41543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 41454..41543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig117.1477.1

>prot_L-elsbetiae_contig117.1477.1 ID=prot_L-elsbetiae_contig117.1477.1|Name=mRNA_L-elsbetiae_contig117.1477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MKRGTREPFARAGSPNSPVPSPSSAGKRRRLLNSDDGPSSQEPPYGPFQA
LLAEHGVAWPSAEAMADEDSEKRSLGFSCRSNPSKLRVGVERALVHDGAR
RSEFVESMEGFIAGPNQAFRRALLPLDCCSGGNSRG
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mRNA from alignment at L-elsbetiae_contig117:36676..41543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig117.1477.1 ID=mRNA_L-elsbetiae_contig117.1477.1|Name=mRNA_L-elsbetiae_contig117.1477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4868bp|location=Sequence derived from alignment at L-elsbetiae_contig117:36676..41543+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAGGAGGCCCGGCCAAAGGGCTGCGCACAGCACAGGTGTACAAGATCG
GTAAATCTCGCTGGTCCTGAGCGTGCTATCGACGGCTGATTTTTCTTGTG
CTCGCCAGGCGCGCGGAAGAGTGCGTTCGTTCCAAAAAGAGACACGGAAA
TTCAAACTCACGCGCCCGGCGAGTAATTATCGCAGTTTCCGCCATGAAGC
GTGGTACTCGCGAGCCCTTCGCCAGGGCCGGCTCCCCGAATTCTCCGGTG
CCGTCTCCTTCATCAGCAGGCAAGCGGAGACGGCTGCTCAACAGCGACGA
CGGGCCGTCAAGCCAAGAGCCGCCTTACGGGCCGTTCCAAGCCCTCCTCG
CCGAACACGGAGTGGCATGGCCCTCTGCGGAGGCGATGGCGGACGAGGAC
AGCGAGAAGAGGTCGCTGGGGTTCTCCTGCCGCAGCAACCCCTCGAAGCT
AAGGGTTGGGGTCGAGAGGGCGCTGGTGCACGATGGAGCTCGTCGAAGTG
AATTCGTAGAGGTGAACCTGACAACATAATTTCAAACAGTTTTTTTTTTT
TGCATCATGTGTCCGAGGAGCCGAGGAGAGCACATGTTCGTCGCCCCGGT
GGTCTTATTGGTACCCACGCAACCTTCGACGAACTAGATCGTGGGATAGA
GCCCCTGCGAAGCGAGTTTTTTACTCACATTCGTTTCATGGAAAATTCAT
TGGGAGCGATTTCGTTAGTAAATATGAATATTACTTCGACTTGGTTGTTG
AAAAGGGTGGGGAGAGTGCTGAACCCTGCTCGCGATAAAAACATTACAGG
CAGGCACCCCAGGAGGGGGACCACCCCCTGACCCCGGTTGGGTCGTCTAG
CTAGTTGTAGTGGAGTATGGGGATCAGTAGGGCAGACGATGAATATGCCA
ATAATGGGAGGAGAAAATAGGGAAAACGACGCAACAGGGTTACCCTGGTA
GAACCACGACATACTTCATAAGCTGGGTACCCCTTTCCACAAACACACGC
GCATTGCTGATTGGCCAGCGCCACCATTGACCCGGTTCTGGTGCCGTTCG
CCCATGGGTATACCTTGCTGGGTCTTTCTTTGTCCCTAATTGCACCCTGC
TGCTCCCGATCTGTACCCTATTCAGACGGGAAATTGCCCCGCACTAAGAC
TCTTCTGCCCGCTGTACGGCACATCAAACCACAGGCACAACACCCCGCGT
TTGATGCTACCCACGGACAAACATATGGGAAAACCGAAGTAAGTCGGCGG
CGCACAACACGGCGTAACAAACCACAACCATGGCATAAACACACACATAT
GGGATATCCCAGGTCGAGTCGGCGCCCAGACACAGCCATCGCAAAAAAAC
CCGCGTTATTTTACACACACATAAGATGTATGGGATATGTATGTATGTAT
GGGATATTCCAAGTCGGGGCAGAAACCGGCGTAACAAACCACAGCCAGCA
CAGGGCAAAACTCAAAGGACACCGGCGATACACGCGTCAGCATCCACTTC
ACACCCACACCCACCCACATACACAAACCACACACTCCGGCGCCCACGGA
AGGGGGCGTTACCTACCATTTACCTGCTATTTATTTAGGCTACAACCACT
TGTTTTTCAAAACTACAAGGCCTGTGGTACGGGTGGTGAATCAACCATGG
GAGAGAGCTGATGAAGTGTGGCTGTGTCTATGCGCCGACTCGACCTGGGA
TATCCCATATGTGTGCGTTTATGCCCATGGTTGTGATTTGTTGCGCAGTG
TTGTGCGCCGCCGACTTCTTCGGTTTTCCTTAATATGTTTGTCCGTGGGT
AGCATCAAACGCGGGGTGCTTTGCCATGGCTGTGGTTTAATATGCCGTAC
AGCGGGCAGAAGAGTCTTAGTGCGGGGCAATTTCCCGTCTGAATAGGGTA
CAGGTCGGGAGCAGCAGGGTACAATTTGGGACAAAGAAAGACGCAGCAGG
GTATACCCATGGGCGAACGGCACTAAACCGGGTCAATGGCGGCGCTGGCC
AATCAGCAATGCGCGTGTAATGTCTGTGGAAAGGGGTACCCAGCTATGTC
GTGGTTCTATCAGGGTAGGTGCGTCGTTTTCCCAAAAAAAACATGGAAGG
AGGAGAATGTTGAAAGAAAACAGCAGTTAAGGGGGGGGGTGACAACACTG
GGAAACATGCCCTCACAAAATCCCAAGACAAACACAAATCGGGCCCCCTC
TGCCTATTCAAAAACCAAGTTAAACCGCTTAGCTTCTCAAAAAGTTTAGA
ATTAGGTCTTCTCCGTACTACACAGCTCTGTGCGTAGAGGACACCATGGA
GAAGGTGTGATGCGTGCTGGCATGTGCAGATCTGCTTCTGAGGCGGAGTT
ATCGAGCACCGCAGCAGTCCTGCAGAACTCCGCAATCTGGGCCAACGACA
GCAGACATCCACTGCTGTGCTCGCCACCGCAGATCCCAACCTCCACAACC
ATGGGTACCCGCAATTCAGGAAGTCGGGGTCTGTGGCGGCGAACTCAGCA
GTGGATATTTGCAGTCGTCGGCCGATTGCGGAGTTCTGTGGAGCTACTGC
TGCAGTGCTCCATAACTCCACCCCAGCAGTAAATATTCACATGCCAGCAC
GCATCACACCCTTCTCCATGGTGTCCTCTACGCACAGAGCTGTGTAGTAC
GAAAAATCTCTTATCCCGAACCTTATTTTGGACTACCGCAAAATGGCCTG
TTGTGTCTTGGTTTTATAGTGCGTTTTTTTTGTTTTAATTTTAAAGTTCG
CGGTTGGAGGTAGACTGTGTGATGTGTATGCCAAGAACAGCCCCGCTACC
CGCTGGGTGGGCGAATTAACAGCTTTCTTCTTGCGCAACGCTCCCCTACT
GGTCCGGTAGATCGGTTGTATGCTTAATGTGTGCTTGTTCGGGCATTTTC
AAATTTGCCTAATTCCAAAAATCGTTGTCACCCCCTCCTTAATAAAAAAT
GGAACATAACTCACATTGGGACTCGACTCCACAACTCCACAATGGTTTGC
TTGCATTCAATCCAAGCAGTGCAGGAAGCTCATGCTTGAAATGGAACATC
CTTTTTCAAGTATGTTTTCCCCTCTGCTGCTGTGTGTCTCGAGTGAGAGA
TCTGCTGTATGGAGTCAGTCTACACACAGTAACTTCGACCTCATGGTAAT
TGATATCATTGTCACACAGTGATTACCGTAGGTGACACAAGAACCACACC
CCCTGTACACATTTCCAAAGCTCGATTCCTCCCCAGCAAGAAGAGCGCCA
GTGCCAAAAAGGGTAGCGTTGGAAAGATCTAGTCGAGGGCTGTCCGAAAA
TGTGTTGTTTGGAGCTGGCACCTTCTTCGTTACGGAGTAATCGAGCTCTA
AAATTCGATCCAGGGGGTGTGGTATCTTGTGTCACATACGGTAGCTGCTA
GTCATAGCGCGGGTATATTTTGTGTCTCAAGATATACGACGACCAACGGC
TTTTCTGTATCTCCGTAGATGCGGCGGAATGGTCTCCGCCGCCTCTGACT
GGTTTATAGTCTAGGATGAGAGTGTGCGTCACCGCCCACTCTCTCACACC
CGAGTAGCTCGTTAGCAAAAGGAAGGATAAACAAGTGAGTTAACTTTCTG
GCACCCGCTAGGGATTGACAGCGCGTCAACCTATCAGACTCACCGTCGAC
GAGGGAAAGGGATGGCTGAACCCTTCTCGCGACAAAAAGCTTTGGCAAGC
ACCGTAGAAGGGGGAGTGGGGGCCTCGGGGAAAGGAGCCCTTGTGTGTGT
GACGGCGGCCTTCTGTGTGACCACGGTTCAGTGCTCTGGCCAAGATGCCC
TCGTGGCAAGGAGCCCATCGAGCACTGGAAATAAATGTGAAGAAGAAACT
GAGTAAAATAAAAAACGAACTCAACACGCCAAATTGTTCAAAATATCGCT
CGAATTTTCTCCGTCTCTCGACAGCCTTACACGCAGTGGTATCCCGCCTG
GGGAGACCGGCAAGTCTTTACCCTTCGAGGGGATCGGCAGATGGAACTCG
GTTCGCAGAACTCCTCCACAAACTATTAGGACACAGTATTGACCTCTCGG
GCGTGGTGGTCTGCGGTGATGCCCTGGAGTGCCGATGGTGCATCCGGGTG
TTTTCGAAGAACCATCCTGATCCGAAAAAACGCCTGCATCTCTCTGCGGG
TATATCCACATCAAGCGAGTTTTTATCCCTCGAGCACCACACCTCCTCAT
TTCGGCTACTCTCTTCAGCGCTACCGATTTTATCTAGGCTTCAGCTACTA
GAAACGTGCGTTCACAAGCCCACAAGCTGGTGTACAGCTGTCGCTGCACA
CCAAAAGGTCGACAAATTATTTGGAATGTACATTTGTATGTAGCTTTATG
CCTAACCCTGACCCTTTAGCGTTTGCTTGGCTCGGAATGTACATATGTAT
GTAGCTTCATATTTTTGCATCCGTGTTATCACACTAGTTTGGTTATTCAG
CCAAAATAGCTCTATCTGTCGGCCCCCCAGCGGAACAACACTGCGCACGC
TATTTCTTTGTTCTCTTCGCAAAAAAAAAAAAAACGCGCCATAGGTATGT
AGATTTTTGTCGAAATATGTTATCATCTCCTATACTATCTAGACTCCATA
TTTCGACAAAAATCGTGATGCTGCATTGTGGATACCTCTTACTCCAGTAG
TCTTTTTTTTTTGTGTGTGTGCTTCATATCCCCGTACTGACTGTGTATAA
ACTCTTCCTGTTGTTTCTGCCCTGTCCCTCGATCATTTCTGCCCCACCCA
CCCACACTCCCATCCTCCTCAACGGCAGAGCATGGAAGGATTCATAGCGG
GCCCCAACCAAGCCTTCCGGCGCGCCCTTCTGCCCCTCGACTGCTGCAGC
GGAGGAAACAGCCGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig117:36676..41543+

>mRNA_L-elsbetiae_contig117.1477.1 ID=mRNA_L-elsbetiae_contig117.1477.1|Name=mRNA_L-elsbetiae_contig117.1477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig117:36676..41543+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCGTGGTACTCGCGAGCCCTTCGCCAGGGCCGGCTCCCCGAATTC
TCCGGTGCCGTCTCCTTCATCAGCAGGCAAGCGGAGACGGCTGCTCAACA
GCGACGACGGGCCGTCAAGCCAAGAGCCGCCTTACGGGCCGTTCCAAGCC
CTCCTCGCCGAACACGGAGTGGCATGGCCCTCTGCGGAGGCGATGGCGGA
CGAGGACAGCGAGAAGAGGTCGCTGGGGTTCTCCTGCCGCAGCAACCCCT
CGAAGCTAAGGGTTGGGGTCGAGAGGGCGCTGGTGCACGATGGAGCTCGT
CGAAGTGAATTCGTAGAGATGAAGCGTGGTACTCGCGAGCCCTTCGCCAG
GGCCGGCTCCCCGAATTCTCCGGTGCCGTCTCCTTCATCAGCAGGCAAGC
GGAGACGGCTGCTCAACAGCGACGACGGGCCGTCAAGCCAAGAGCCGCCT
TACGGGCCGTTCCAAGCCCTCCTCGCCGAACACGGAGTGGCATGGCCCTC
TGCGGAGGCGATGGCGGACGAGGACAGCGAGAAGAGGTCGCTGGGGTTCT
CCTGCCGCAGCAACCCCTCGAAGCTAAGGGTTGGGGTCGAGAGGGCGCTG
GTGCACGATGGAGCTCGTCGAAGTGAATTCGTAGAGAGCATGGAAGGATT
CATAGCGGGCCCCAACCAAGCCTTCCGGCGCGCCCTTCTGCCCCTCGACT
GCTGCAGCGGAGGAAACAGCCGCGGCAGCATGGAAGGATTCATAGCGGGC
CCCAACCAAGCCTTCCGGCGCGCCCTTCTGCCCCTCGACTGCTGCAGCGG
AGGAAACAGCCGCGGC
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