mRNA_L-elsbetiae_contig117.1473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig117.1473.1
Unique NamemRNA_L-elsbetiae_contig117.1473.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig117.1473.1 vs. uniprot
Match: D7G232_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G232_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 8.670e-49
Identity = 97/140 (69.29%), Postives = 108/140 (77.14%), Query Frame = 1 
Query:  406 DLLPARQSDTGMANEGGVRVKTEANLV--DEPCPIAKNTALLEELDGAEGKVAELLEVAAEALDELSGVESLDSAKVEASAKIFLGLVSSVHGTLSSNAALIRDYTPYPRSVYGPRKELELLQEKARFLRATLANLACDE 819
            D     Q       + GV VK E  +   ++ CPIAKN ALLEELD AEGKVAELLEVAA+ALDEL+GVESLDS+KVEAS K FL LVSSVHGTLSS A LIRDYTPYPRS+YGPRKELELL EKARFLR TLA L+ ++
Sbjct:    2 DATTESQKGASSIEDAGVAVKMEGQVGGDEDSCPIAKNAALLEELDAAEGKVAELLEVAADALDELAGVESLDSSKVEASTKKFLELVSSVHGTLSSKAELIRDYTPYPRSIYGPRKELELLHEKARFLRTTLAELSKEQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig117.1473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G232_ECTSI8.670e-4969.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig117contigL-elsbetiae_contig117:11448..12895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003640.1
Exons2
Model size1438
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig117.1473.1prot_L-elsbetiae_contig117.1473.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig117 11808..12420 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.0732758-UTR-L-elsbetiae_contig117:11447..118071622815372.0732758-UTR-L-elsbetiae_contig117:11447..11807Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 11448..11807 +
1691682866.4680145-UTR-L-elsbetiae_contig117:11447..118071691682866.4680145-UTR-L-elsbetiae_contig117:11447..11807Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 11448..11807 +
1622815372.107479-UTR-L-elsbetiae_contig117:12420..128951622815372.107479-UTR-L-elsbetiae_contig117:12420..12895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 12421..12895 +
1691682866.501802-UTR-L-elsbetiae_contig117:12420..128951691682866.501802-UTR-L-elsbetiae_contig117:12420..12895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 12421..12895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.0851922-CDS-L-elsbetiae_contig117:11807..123411622815372.0851922-CDS-L-elsbetiae_contig117:11807..12341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 11808..12341 +
1691682866.4774644-CDS-L-elsbetiae_contig117:11807..123411691682866.4774644-CDS-L-elsbetiae_contig117:11807..12341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 11808..12341 +
1622815372.0956528-CDS-L-elsbetiae_contig117:12351..124201622815372.0956528-CDS-L-elsbetiae_contig117:12351..12420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 12352..12420 +
1691682866.4874496-CDS-L-elsbetiae_contig117:12351..124201691682866.4874496-CDS-L-elsbetiae_contig117:12351..12420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 12352..12420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig117.1473.1

>prot_L-elsbetiae_contig117.1473.1 ID=prot_L-elsbetiae_contig117.1473.1|Name=mRNA_L-elsbetiae_contig117.1473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MVILLTIPPLGRNSGDLLPARQSDTGMANEGGVRVKTEANLVDEPCPIAK
NTALLEELDGAEGKVAELLEVAAEALDELSGVESLDSAKVEASAKIFLGL
VSSVHGTLSSNAALIRDYTPYPRSVYGPRKELELLQEKARFLRATLANLA
CDEAAAAATTSAAADNSPSGVGTTTAAAQQQQQQQRTQRLRVCSGASRGL
*
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mRNA from alignment at L-elsbetiae_contig117:11448..12895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig117.1473.1 ID=mRNA_L-elsbetiae_contig117.1473.1|Name=mRNA_L-elsbetiae_contig117.1473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1448bp|location=Sequence derived from alignment at L-elsbetiae_contig117:11448..12895+ (Laminarionema elsbetiae ELsaHSoW15)
GCATGACGCAACCACGCAACACGGCAAAACGAAGGACGCGGCGTGGAAGC
TCAACAACGGGGAGGGGTCAGTCCACCGCGGCTGGACGCTTGTTTGTCTC
TGCAGTCCGGCAAACAGGACCAACGCCACACGCTCTTTCCCAAAAAAAAG
ACGGGCGCACGAGGGCCATTGGGTTTGGCATAGCAGTGAGCAGGTCTACT
CAAGTTACCCAGCAAGAGAAAGGGGAGATGCACTGTCAGGCCATGAGCTC
TCACCTCGGGTAAGGCGTCCACCTCAGCCATCGTGCTGTGAAGCTTGTTT
GTTGCGCTCGCATTTGCGGCTCCGTGGAATGCGTGGCGCCGGTTACCGCC
ATACCCGTGCATGGTAATATTGCTCACGATACCCCCGCTGGGCCGGAACT
CGGGTGACCTGTTGCCCGCCAGACAGAGCGATACGGGGATGGCCAACGAA
GGCGGGGTGAGGGTGAAGACGGAGGCAAACTTAGTTGATGAACCATGTCC
AATCGCGAAGAACACAGCTCTCTTGGAGGAGCTCGACGGAGCCGAGGGCA
AGGTAGCGGAGCTGCTGGAGGTCGCTGCGGAGGCACTGGACGAGCTTTCA
GGGGTGGAGTCGCTAGACAGCGCCAAGGTTGAGGCCTCGGCGAAGATTTT
TTTAGGGTTGGTGTCTTCCGTGCACGGCACGTTGTCGTCGAACGCAGCCC
TGATTCGAGACTACACCCCGTATCCGCGCAGTGTATACGGGCCGAGGAAG
GAGCTGGAGCTTCTCCAGGAGAAGGCCCGTTTCTTACGAGCGACCCTGGC
CAATCTGGCGTGCGACGAGGCCGCCGCTGCTGCAACCACTTCGGCTGCCG
CAGATAATTCTCCTTCAGGGGTGGGAACAACAACGGCGGCGGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGGACCCAGCGTCTACGAGTGTGTA
GCGGTGCTAGTCGGGGTTTGTAAAACATTGAAAGTAGTTAGGTCTAGTAG
TTACGTAGTAACGGCTGCTGTGGTTGCGATGGCATGGTTGCACACATCAA
ACACATCTGCTGTACCTGTGAAAGCACGAAACTCCGCATCGCATGGGGTT
TGATGTGCCCCACTGCGTTTTCTTGCTGCGTGTTGACGTTTTGTGTGCGT
GCTTTGCGTGCGAGTGAAGGGCAAGGTTTGCGTACCATCCTGGTTGTGTG
TAATATATAGCCAACGGTGGTCGGTGTACTTGTCGCACGCTGCTCGTTTT
CTACGCAAATTATCGTGGTTGGTTGTTTCGAACACGTTGGTCTTGCTTGT
ATAAGCTGATTTCTCGGCAAAAAAATCGCGCTCACTTCGAAAGTGGCTCG
ATATATGGTGGCTACTGAACTTGCACGGAGGTGTTCTTTCCGCTGCACAG
AAACTCCTGCGAGCGCTCCTATTTACGGTAATCAGATGGAGGACCACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig117:11448..12895+

>mRNA_L-elsbetiae_contig117.1473.1 ID=mRNA_L-elsbetiae_contig117.1473.1|Name=mRNA_L-elsbetiae_contig117.1473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig117:11448..12895+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAATATTGCTCACGATACCCCCGCTGGGCCGGAACTCGGGTGACCT
GTTGCCCGCCAGACAGAGCGATACGGGGATGGCCAACGAAGGCGGGGTGA
GGGTGAAGACGGAGGCAAACTTAGTTGATGAACCATGTCCAATCGCGAAG
AACACAGCTCTCTTGGAGGAGCTCGACGGAGCCGAGGGCAAGGTAGCGGA
GCTGCTGGAGGTCGCTGCGGAGGCACTGGACGAGCTTTCAGGGGTGGAGT
CGCTAGACAGCGCCAAGGTTGAGGCCTCGGCGAAGATTTTTTTAGGGTTG
GTGTCTTCCGTGCACGGCACGTTGTCGTCGAACGCAGCCCTGATTCGAGA
CTACACCCCGTATCCGCGCAGTGTATACGGGCCGAGGAAGGAGCTGGAGC
TTCTCCAGGAGAAGGCCCGTTTCTTACGAGCGACCCTGGCCAATCTGGCG
TGCGACGAGGCCGCCGCTGCTGCAACCACTTCGGCTGCCGCAGATAATTC
TCCTTCAGGGGTGGGAACAACAACGGCGGCGGCGATGGTAATATTGCTCA
CGATACCCCCGCTGGGCCGGAACTCGGGTGACCTGTTGCCCGCCAGACAG
AGCGATACGGGGATGGCCAACGAAGGCGGGGTGAGGGTGAAGACGGAGGC
AAACTTAGTTGATGAACCATGTCCAATCGCGAAGAACACAGCTCTCTTGG
AGGAGCTCGACGGAGCCGAGGGCAAGGTAGCGGAGCTGCTGGAGGTCGCT
GCGGAGGCACTGGACGAGCTTTCAGGGGTGGAGTCGCTAGACAGCGCCAA
GGTTGAGGCCTCGGCGAAGATTTTTTTAGGGTTGGTGTCTTCCGTGCACG
GCACGTTGTCGTCGAACGCAGCCCTGATTCGAGACTACACCCCGTATCCG
CGCAGTGTATACGGGCCGAGGAAGGAGCTGGAGCTTCTCCAGGAGAAGGC
CCGTTTCTTACGAGCGACCCTGGCCAATCTGGCGTGCGACGAGGCCGCCG
CTGCTGCAACCACTTCGGCTGCCGCAGATAATTCTCCTTCAGGGGTGGGA
ACAACAACGGCGGCGGCGCAGCAGCAGCAGCAGCAGCAGCGGACCCAGCG
TCTACGAGTGTGTAGCGGTGCTAGTCGGGGTTTGTAACAGCAGCAGCAGC
AGCAGCAGCGGACCCAGCGTCTACGAGTGTGTAGCGGTGCTAGTCGGGGT
TTGTAA
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