mRNA_L-elsbetiae_contig117.1475.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig117.1475.1
Unique NamemRNA_L-elsbetiae_contig117.1475.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig117.1475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig117contigL-elsbetiae_contig117:21791..22107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.940717-UTR-L-elsbetiae_contig117:21790..218041622815371.940717-UTR-L-elsbetiae_contig117:21790..21804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 21791..21804 +
1691682866.392735-UTR-L-elsbetiae_contig117:21790..218041691682866.392735-UTR-L-elsbetiae_contig117:21790..21804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig117 21791..21804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.9499707-CDS-L-elsbetiae_contig117:21804..221071622815371.9499707-CDS-L-elsbetiae_contig117:21804..22107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 21805..22107 +
1691682866.4035203-CDS-L-elsbetiae_contig117:21804..221071691682866.4035203-CDS-L-elsbetiae_contig117:21804..22107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig117 21805..22107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig117.1475.1prot_L-elsbetiae_contig117.1475.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig117 21805..22107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig117.1475.1

>prot_L-elsbetiae_contig117.1475.1 ID=prot_L-elsbetiae_contig117.1475.1|Name=mRNA_L-elsbetiae_contig117.1475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MAVYSASTTTAAAAMVFSGAEVGGGGGIGAGHGDGGASSGYLPATAAAVN
MDPAASSSALLPGSSGGGDFFSAAGPPDPLIMDGNGSPSPAAAGGEGILV
N
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mRNA from alignment at L-elsbetiae_contig117:21791..22107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig117.1475.1 ID=mRNA_L-elsbetiae_contig117.1475.1|Name=mRNA_L-elsbetiae_contig117.1475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=317bp|location=Sequence derived from alignment at L-elsbetiae_contig117:21791..22107+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGCCGCAGATGGCGGTGTACTCGGCATCGACGACGACGGCAGCG
GCCGCGATGGTATTCTCAGGAGCCGAGGTCGGCGGCGGCGGCGGTATCGG
GGCAGGGCACGGCGACGGGGGCGCCAGCTCCGGCTACCTACCGGCGACCG
CAGCAGCAGTAAACATGGACCCTGCCGCTTCGAGCTCGGCTTTGCTGCCC
GGCAGCAGCGGCGGCGGCGACTTCTTCTCGGCCGCGGGGCCCCCTGACCC
TTTGATCATGGACGGGAACGGTTCTCCGTCTCCGGCGGCGGCGGGGGGAG
AGGGAATTCTTGTAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig117:21791..22107+

>mRNA_L-elsbetiae_contig117.1475.1 ID=mRNA_L-elsbetiae_contig117.1475.1|Name=mRNA_L-elsbetiae_contig117.1475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig117:21791..22107+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTGTACTCGGCATCGACGACGACGGCAGCGGCCGCGATGGTATT
CTCAGGAGCCGAGGTCGGCGGCGGCGGCGGTATCGGGGCAGGGCACGGCG
ACGGGGGCGCCAGCTCCGGCTACCTACCGGCGACCGCAGCAGCAGTAAAC
ATGGACCCTGCCGCTTCGAGCTCGGCTTTGCTGCCCGGCAGCAGCGGCGG
CGGCGACTTCTTCTCGGCCGCGGGGCCCCCTGACCCTTTGATCATGGACG
GGAACGGTTCTCCGTCTCCGGCGGCGGCGGGGGGAGAGGGAATTCTTGTA
AACATGGCGGTGTACTCGGCATCGACGACGACGGCAGCGGCCGCGATGGT
ATTCTCAGGAGCCGAGGTCGGCGGCGGCGGCGGTATCGGGGCAGGGCACG
GCGACGGGGGCGCCAGCTCCGGCTACCTACCGGCGACCGCAGCAGCAGTA
AACATGGACCCTGCCGCTTCGAGCTCGGCTTTGCTGCCCGGCAGCAGCGG
CGGCGGCGACTTCTTCTCGGCCGCGGGGCCCCCTGACCCTTTGATCATGG
ACGGGAACGGTTCTCCGTCTCCGGCGGCGGCGGGGGGAGAGGGAATTCTT
GTAAAC
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