mRNA_L-elsbetiae_contig614.14708.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig614.14708.1
Unique NamemRNA_L-elsbetiae_contig614.14708.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig614.14708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig614contigL-elsbetiae_contig614:11459..12446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.0749133-CDS-L-elsbetiae_contig614:11458..117791622816672.0749133-CDS-L-elsbetiae_contig614:11458..11779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig614 11459..11779 +
1691683728.8375587-CDS-L-elsbetiae_contig614:11458..117791691683728.8375587-CDS-L-elsbetiae_contig614:11458..11779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig614 11459..11779 +
1622816672.0964243-CDS-L-elsbetiae_contig614:12361..124451622816672.0964243-CDS-L-elsbetiae_contig614:12361..12445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig614 12362..12445 +
1691683728.847284-CDS-L-elsbetiae_contig614:12361..124451691683728.847284-CDS-L-elsbetiae_contig614:12361..12445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig614 12362..12445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig614.14708.1prot_L-elsbetiae_contig614.14708.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig614 11459..12445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig614.14708.1

>prot_L-elsbetiae_contig614.14708.1 ID=prot_L-elsbetiae_contig614.14708.1|Name=mRNA_L-elsbetiae_contig614.14708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
SGGGGGGGSSSGSGQAMAGTGTMNFGGAPSLFGLESAYMQQDCYNYLDDD
GPYNDHCNDHCNDQCNVLYNHELYDDRTRGNGNSVEGGCERRVDSTSMAT
TMLNPLQDHQQTPSKKRKDLPAEDIPYDAGPRAKR
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mRNA from alignment at L-elsbetiae_contig614:11459..12446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig614.14708.1 ID=mRNA_L-elsbetiae_contig614.14708.1|Name=mRNA_L-elsbetiae_contig614.14708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=988bp|location=Sequence derived from alignment at L-elsbetiae_contig614:11459..12446+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGGCGGTGGCGGTGGCGGTGGCAGCAGTAGCGGCAGCGGCCAGGCTAT
GGCCGGGACGGGAACGATGAACTTCGGCGGCGCACCATCGCTTTTCGGCC
TAGAGTCCGCTTACATGCAGCAAGACTGCTACAACTACCTCGACGACGAT
GGCCCCTACAACGACCACTGCAACGACCACTGCAACGACCAGTGCAACGT
CCTCTACAACCACGAGCTCTATGACGACCGGACACGGGGCAATGGCAATA
GCGTGGAGGGAGGGTGCGAAAGGCGCGTTGACTCCACTAGCATGGCAACA
ACTATGCTAAACCCACTCCAGGTGACCGTGTTGCTTAGGAACGGAAGTGC
GATGTTGGGAATGGATGGTGTGATATATACTGTTGTGCGGTACCGTGCTG
GGTGGATGCGTCTTGCCGCCGGGCATGCGGTCGGTGTTCTTTGTTGTAGC
AGGAGTCTTTCCGAGGCGCCGCGGGGGAAGTTATTACGTATCGGCGTTTG
GGCAAAACAAACGAACCACTCGCCTGCTGAGTTGAGCATGTTTTATTGCC
GTGTATTGCCTCTTAGTATAGACTTTTGTGCAAATTAACACAAAAAAGTT
GACGGAATTAACCCGAAATTTTAAATTTCACCAATTGGAACTCTGGCAAA
TTATTGCAGAAACAGAGGTTGTGGTAAACATGTGAAAAAACACCTCCCGA
GGCCTCAGGCTATTTAAGGCAAAGACAACAACTGATGTGAGCATTTGAGA
ATATGCACCATCAGACAGCTGCGCACGACCAACAGCTTGTCCCAGGCATT
AAGACAACAACCGCTACACTGCAAAATATTGTTTTCACGTTTTTACCCAC
CCTCCCTTTACGCTTTTGTCATTGCGCCGTATTTCCCTTGTCTTTTGGTG
CAGGACCACCAGCAGACGCCTTCAAAGAAGAGGAAGGATCTCCCCGCCGA
AGACATACCTTACGACGCGGGCCCCCGCGCCAAGCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig614:11459..12446+

>mRNA_L-elsbetiae_contig614.14708.1 ID=mRNA_L-elsbetiae_contig614.14708.1|Name=mRNA_L-elsbetiae_contig614.14708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig614:11459..12446+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGGCGGTGGCGGTGGCGGTGGCAGCAGTAGCGGCAGCGGCCAGGCTAT
GGCCGGGACGGGAACGATGAACTTCGGCGGCGCACCATCGCTTTTCGGCC
TAGAGTCCGCTTACATGCAGCAAGACTGCTACAACTACCTCGACGACGAT
GGCCCCTACAACGACCACTGCAACGACCACTGCAACGACCAGTGCAACGT
CCTCTACAACCACGAGCTCTATGACGACCGGACACGGGGCAATGGCAATA
GCGTGGAGGGAGGGTGCGAAAGGCGCGTTGACTCCACTAGCATGGCAACA
ACTATGCTAAACCCACTCCAGAGTGGCGGTGGCGGTGGCGGTGGCAGCAG
TAGCGGCAGCGGCCAGGCTATGGCCGGGACGGGAACGATGAACTTCGGCG
GCGCACCATCGCTTTTCGGCCTAGAGTCCGCTTACATGCAGCAAGACTGC
TACAACTACCTCGACGACGATGGCCCCTACAACGACCACTGCAACGACCA
CTGCAACGACCAGTGCAACGTCCTCTACAACCACGAGCTCTATGACGACC
GGACACGGGGCAATGGCAATAGCGTGGAGGGAGGGTGCGAAAGGCGCGTT
GACTCCACTAGCATGGCAACAACTATGCTAAACCCACTCCAGGACCACCA
GCAGACGCCTTCAAAGAAGAGGAAGGATCTCCCCGCCGAAGACATACCTT
ACGACGCGGGCCCCCGCGCCAAGCGCGACCACCAGCAGACGCCTTCAAAG
AAGAGGAAGGATCTCCCCGCCGAAGACATACCTTACGACGCGGGCCCCCG
CGCCAAGCGC
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