mRNA_L-elsbetiae_contig6136.14703.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6136.14703.1
Unique NamemRNA_L-elsbetiae_contig6136.14703.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6136.14703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6136contigL-elsbetiae_contig6136:430..1045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6136.14703.1prot_L-elsbetiae_contig6136.14703.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6136 495..878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.7575214-UTR-L-elsbetiae_contig6136:429..4941622816671.7575214-UTR-L-elsbetiae_contig6136:429..494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6136 430..494 +
1691683728.653441-UTR-L-elsbetiae_contig6136:429..4941691683728.653441-UTR-L-elsbetiae_contig6136:429..494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6136 430..494 +
1622816671.779274-UTR-L-elsbetiae_contig6136:878..10451622816671.779274-UTR-L-elsbetiae_contig6136:878..1045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6136 879..1045 +
1691683728.671508-UTR-L-elsbetiae_contig6136:878..10451691683728.671508-UTR-L-elsbetiae_contig6136:878..1045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6136 879..1045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.7682996-CDS-L-elsbetiae_contig6136:494..8781622816671.7682996-CDS-L-elsbetiae_contig6136:494..878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6136 495..878 +
1691683728.6628644-CDS-L-elsbetiae_contig6136:494..8781691683728.6628644-CDS-L-elsbetiae_contig6136:494..878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6136 495..878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6136.14703.1

>prot_L-elsbetiae_contig6136.14703.1 ID=prot_L-elsbetiae_contig6136.14703.1|Name=mRNA_L-elsbetiae_contig6136.14703.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MCREKLSSAPIFVWTNCCARTICTAEIRRFGVEVVYRFLTHRLPISAFKY
PAERYRHLLTAVRLVGMYPPRVLCLLVVTYLSPISPSLYLRLPHLHTPPY
FSSIYVHHTHPSAVLRLVASHSHFKLH*
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mRNA from alignment at L-elsbetiae_contig6136:430..1045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6136.14703.1 ID=mRNA_L-elsbetiae_contig6136.14703.1|Name=mRNA_L-elsbetiae_contig6136.14703.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=616bp|location=Sequence derived from alignment at L-elsbetiae_contig6136:430..1045+ (Laminarionema elsbetiae ELsaHSoW15)
CGTTACGTCACGCGCCTTGAGACAGGGCTTTTGTCGGTTCTTTCGGATTT
CAGAACAATTCACCCATGTGCAGAGAAAAGCTGTCATCCGCGCCAATATT
TGTTTGGACAAATTGTTGTGCACGGACCATATGTACAGCTGAGATAAGGC
GATTTGGCGTGGAGGTAGTATATCGGTTTCTTACCCATCGCCTACCTATA
TCCGCCTTCAAATATCCCGCAGAACGTTATCGACACCTGCTAACAGCGGT
TCGACTCGTAGGCATGTACCCACCCCGCGTCCTGTGCCTACTTGTCGTGA
CATATCTTTCACCAATCTCACCCAGTCTTTACTTACGGCTACCGCACCTC
CATACACCACCATACTTTTCCTCTATCTATGTCCACCACACTCATCCTAG
TGCCGTGCTCCGCCTCGTCGCATCTCACTCTCATTTCAAGTTACACTAGC
CTGCCTGCCTGCCTGCCTGCCTGCCTGCCGTATACAGAACGTCCTCGCCA
TCGGCTCCACGTCGTCGGGTGAAACGCGCTTGACCACTACAGCGCTGGAC
CCGGACAGAGAGTTGGGCAGCATCTATAATTCCGACAGAGAATTGGCCGA
CATCAACACCATCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6136:430..1045+

>mRNA_L-elsbetiae_contig6136.14703.1 ID=mRNA_L-elsbetiae_contig6136.14703.1|Name=mRNA_L-elsbetiae_contig6136.14703.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig6136:430..1045+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCAGAGAAAAGCTGTCATCCGCGCCAATATTTGTTTGGACAAATTG
TTGTGCACGGACCATATGTACAGCTGAGATAAGGCGATTTGGCGTGGAGG
TAGTATATCGGTTTCTTACCCATCGCCTACCTATATCCGCCTTCAAATAT
CCCGCAGAACGTTATCGACACCTGCTAACAGCGGTTCGACTCGTAGGCAT
GTACCCACCCCGCGTCCTGTGCCTACTTGTCGTGACATATCTTTCACCAA
TCTCACCCAGTCTTTACTTACGGCTACCGCACCTCCATACACCACCATAC
TTTTCCTCTATCTATGTCCACCACACTCATCCTAGTGCCGTGCTCCGCCT
CGTCGCATCTCACTCTCATTTCAAGTTACACTAGATGTGCAGAGAAAAGC
TGTCATCCGCGCCAATATTTGTTTGGACAAATTGTTGTGCACGGACCATA
TGTACAGCTGAGATAAGGCGATTTGGCGTGGAGGTAGTATATCGGTTTCT
TACCCATCGCCTACCTATATCCGCCTTCAAATATCCCGCAGAACGTTATC
GACACCTGCTAACAGCGGTTCGACTCGTAGGCATGTACCCACCCCGCGTC
CTGTGCCTACTTGTCGTGACATATCTTTCACCAATCTCACCCAGTCTTTA
CTTACGGCTACCGCACCTCCATACACCACCATACTTTTCCTCTATCTATG
TCCACCACACTCATCCTAGTGCCGTGCTCCGCCTCGTCGCATCTCACTCT
CATTTCAAGTTACACTAG
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