mRNA_L-elsbetiae_contig6135.14701.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6135.14701.1
Unique NamemRNA_L-elsbetiae_contig6135.14701.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.530e-46
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKYKG 231
            RPFSRRLPEFQFWLSSQKG+LMAFGMTFF++FDIPVFWPILL+YFIVLMFLTMKRQVKHMIKHKYVPWNWGKA YKG
Sbjct:   96 RPFSRRLPEFQFWLSSQKGLLMAFGMTFFSLFDIPVFWPILLIYFIVLMFLTMKRQVKHMIKHKYVPWNWGKATYKG 172
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: A0A7S3K339_9STRA (Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K339_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.960e-36
Identity = 60/75 (80.00%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKY 225
            RPFSRR+PEF+FW SS KGVL+AF MTFF+ FDIPVFWPILL+Y+I L+FLTMKRQ+KHMIKHKYVPW++GKAKY
Sbjct:  107 RPFSRRVPEFKFWYSSTKGVLIAFVMTFFSFFDIPVFWPILLLYWIALVFLTMKRQIKHMIKHKYVPWSYGKAKY 181
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: A0A7S2W0T1_9STRA (Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0T1_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.140e-33
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKYKG 231
            RPF RRLPEF+FWL+S + V ++F MTFF IFDIPVFWPILL+YF  L F TMKRQ+ HMIKHKYVPW WGK +Y G
Sbjct:  103 RPFRRRLPEFKFWLASARAVCLSFFMTFFQIFDIPVFWPILLLYFFALFFFTMKRQIMHMIKHKYVPWTWGKRRYTG 179
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: F0YLH9_AURAN (Protein RER1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLH9_AURAN)

HSP 1 Score: 118 bits (295), Expect = 4.880e-32
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKY 225
            +PFSRR+PEF+FW SS KGV++AF MTFF+I   PVFWPILL+YF  L FLTMKRQ+KHMIKHKYVPW+WGK  Y
Sbjct:   90 KPFSRRVPEFKFWYSSTKGVVVAFFMTFFSI---PVFWPILLIYFFALFFLTMKRQIKHMIKHKYVPWSWGKKSY 161
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: A0A7R9YCX7_9STRA (Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.590e-32
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKYKG 231
            RPF RRLPEFQFW S  KG++  F MTFF++FD+PVFWPILL+YFIVL  LTMKRQ++HMIK+KYVP++WGK K+ G
Sbjct:  103 RPFERRLPEFQFWYSCIKGLVYCFMMTFFSVFDVPVFWPILLIYFIVLFSLTMKRQIQHMIKYKYVPFSWGKPKHTG 179
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: A0A8J2X2Q3_9STRA (Protein RER1 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2Q3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.540e-32
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFW----PILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKY 225
            +PFSRR+PEF+FW +S KGV  AF MTFF+IFD+PVFW    PILLVYF  L FLTMKRQ+KHMIKH+YVPW+WGK  Y
Sbjct:  102 KPFSRRVPEFKFWYTSIKGVCTAFFMTFFSIFDVPVFWHSAVPILLVYFFALFFLTMKRQIKHMIKHEYVPWSWGKKSY 180
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: UPI0018D8CF0D (protein RER1-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8CF0D)

HSP 1 Score: 117 bits (293), Expect = 1.820e-31
Identity = 52/77 (67.53%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKYKG 231
            RPF RRLPEF+FWLS+ K VL+A   TFF++FD+PVFWPIL++YFI+L  LTMKRQ+KHM+K++Y+PW+ GKAKY+G
Sbjct:  113 RPFIRRLPEFKFWLSATKAVLVAMFCTFFDVFDVPVFWPILVMYFIILFSLTMKRQIKHMVKYRYLPWSHGKAKYRG 189
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: A0A7S2V805_9STRA (Protein RER1 n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V805_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.970e-31
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKYK 228
            RPF+RRLPEF+FWL+  +G L    MTFF+IFD+PVFWPILL+YF VL F+TMKRQ+ HM KHKYVP +WGKAKYK
Sbjct:  125 RPFARRLPEFKFWLACTRGALTCIVMTFFSIFDVPVFWPILLLYFFVLFFMTMKRQIIHMYKHKYVPISWGKAKYK 200
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: A0A0L0FAM3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FAM3_9EUKA)

HSP 1 Score: 114 bits (285), Expect = 3.360e-31
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKYKG 231
            +PF RRLPEF+FWLS+ KGV  A   +FF +FD+PVFWPIL++YF++L  +TMKRQ+KHM+KHKY+PWN GK KY G
Sbjct:   34 KPFVRRLPEFKFWLSAMKGVFTAIFCSFFKVFDVPVFWPILVLYFLILFTVTMKRQIKHMVKHKYLPWNVGKKKYGG 110
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BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Match: A0A8B7Y9X8_ACAPL (Protein RER1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y9X8_ACAPL)

HSP 1 Score: 116 bits (291), Expect = 4.380e-31
Identity = 53/77 (68.83%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMFLTMKRQVKHMIKHKYVPWNWGKAKYKG 231
            RPF RRLPEF+FWLS+ K VL+A   TFF +FD+PVFWPIL++YFI+L  LTMKRQ+KHM+K+KY+PW  GKAKY+G
Sbjct:  120 RPFIRRLPEFKFWLSATKAVLVATFCTFFEVFDVPVFWPILVMYFIILFCLTMKRQIKHMVKYKYLPWTRGKAKYRG 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6135.14701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB85_ECTSI5.530e-4693.51Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S3K339_9STRA3.960e-3680.00Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A7S2W0T1_9STRA2.140e-3371.43Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=... [more]
F0YLH9_AURAN4.880e-3273.33Protein RER1 n=1 Tax=Aureococcus anophagefferens T... [more]
A0A7R9YCX7_9STRA6.590e-3270.13Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus Ta... [more]
A0A8J2X2Q3_9STRA7.540e-3270.89Protein RER1 n=1 Tax=Pelagomonas calceolata TaxID=... [more]
UPI0018D8CF0D1.820e-3167.53protein RER1-like isoform X1 n=2 Tax=Patiria minia... [more]
A0A7S2V805_9STRA2.970e-3171.05Protein RER1 n=1 Tax=Amphiprora paludosa TaxID=265... [more]
A0A0L0FAM3_9EUKA3.360e-3164.94Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A8B7Y9X8_ACAPL4.380e-3168.83Protein RER1 n=2 Tax=Acanthaster planci TaxID=1334... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6135contigL-elsbetiae_contig6135:1061..1932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue3.5e-35
Seed eggNOG ortholog2880.D8LB85
Preferred nameRER1
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0001941,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0007528,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0030134,GO:0030135,GO:0030137,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033130,GO:0033365,GO:0034613,GO:0035437,GO:0042886,GO:0043113,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045185,GO:0046907,GO:0048193,GO:0048518,GO:0050789,GO:0050808,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071340,GO:0071702,GO:0071705,GO:0071840,GO:0072595,GO:0072657,GO:0097708,GO:0098588,GO:0098791,GO:0099173,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsCOG5249@1,KOG1688@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.5952413-CDS-L-elsbetiae_contig6135:1060..12071622816671.5952413-CDS-L-elsbetiae_contig6135:1060..1207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6135 1061..1207 +
1691683728.5359538-CDS-L-elsbetiae_contig6135:1060..12071691683728.5359538-CDS-L-elsbetiae_contig6135:1060..1207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6135 1061..1207 +
1622816671.6063445-CDS-L-elsbetiae_contig6135:1848..19321622816671.6063445-CDS-L-elsbetiae_contig6135:1848..1932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6135 1849..1932 +
1691683728.5569685-CDS-L-elsbetiae_contig6135:1848..19321691683728.5569685-CDS-L-elsbetiae_contig6135:1848..1932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6135 1849..1932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6135.14701.1prot_L-elsbetiae_contig6135.14701.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6135 1061..1932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6135.14701.1

>prot_L-elsbetiae_contig6135.14701.1 ID=prot_L-elsbetiae_contig6135.14701.1|Name=mRNA_L-elsbetiae_contig6135.14701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
RPFSRRLPEFQFWLSSQKGVLMAFGMTFFNIFDIPVFWPILLVYFIVLMF
LTMKRQVKHMIKHKYVPWNWGKAKYKG
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mRNA from alignment at L-elsbetiae_contig6135:1061..1932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6135.14701.1 ID=mRNA_L-elsbetiae_contig6135.14701.1|Name=mRNA_L-elsbetiae_contig6135.14701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=872bp|location=Sequence derived from alignment at L-elsbetiae_contig6135:1061..1932+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCGTTCAGCCGACGCCTGCCGGAGTTCCAGTTCTGGCTGTCCTCGCA
GAAGGGCGTGCTGATGGCGTTCGGCATGACCTTCTTTAACATTTTCGACA
TCCCCGTCTTCTGGCCGATACTCCTCGTGTACTTCATAGTCCTTATGGTG
GGTCTAACAGTCGGCTCGGGTTCGGCGCTTGTGGGGCAGGACGACCGACG
TGTTCCGCACTCTCAGGCCACTGCTCTATATAGTTTCCGAAATGGCTTTC
TTGTCCTCGACGTGCATGCTTTGGGCTGAACCGGGGGCTGCCGAGGGGGC
GATTTCACGGCCGATATTCTCCACAACGGGGGGCGCGGGGGCGGGGGCGG
GGGGGGGGGCTCATATACGCGGCGTTCCGCGTTCCGTGCATTTGGAAAAA
CTCTCTCCGCTCAACTTNNNNNNNNNNCCTCACTGTTTTCTTTCCGCCGC
GGGCTGTGTGGGGGGCAGGGGGGGGGGGGGGGGGGGGGCGCTCTCCCCCG
GTTCTTCCCCCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
TCTCATATACGCGGCGTTCCGCGTTCCGTGCATTTGGAAAAACTCTCTCC
GCTCAACTTGTTTTCATGAAATGTTGAGTTTCGTCCCTTGGCACTCACTC
CGTTCCTTTTGTCCAAGCAAGACTGATATTGGATGCATTCGTACCACATG
TGGTGGTGAGAGGTCCCAAAAGTTAACGTCCCCCCCCCCCCCCGCCCGCC
CACCCACCCACCGACCCCCCCTTCACCTCGCCTGGAAGTTCTTGACAATG
AAGCGGCAGGTGAAGCACATGATCAAGCACAAGTACGTGCCGTGGAACTG
GGGAAAGGCCAAGTACAAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6135:1061..1932+

>mRNA_L-elsbetiae_contig6135.14701.1 ID=mRNA_L-elsbetiae_contig6135.14701.1|Name=mRNA_L-elsbetiae_contig6135.14701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig6135:1061..1932+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCGTTCAGCCGACGCCTGCCGGAGTTCCAGTTCTGGCTGTCCTCGCA
GAAGGGCGTGCTGATGGCGTTCGGCATGACCTTCTTTAACATTTTCGACA
TCCCCGTCTTCTGGCCGATACTCCTCGTGTACTTCATAGTCCTTATGAGG
CCGTTCAGCCGACGCCTGCCGGAGTTCCAGTTCTGGCTGTCCTCGCAGAA
GGGCGTGCTGATGGCGTTCGGCATGACCTTCTTTAACATTTTCGACATCC
CCGTCTTCTGGCCGATACTCCTCGTGTACTTCATAGTCCTTATGTTCTTG
ACAATGAAGCGGCAGGTGAAGCACATGATCAAGCACAAGTACGTGCCGTG
GAACTGGGGAAAGGCCAAGTACAAAGGCTTCTTGACAATGAAGCGGCAGG
TGAAGCACATGATCAAGCACAAGTACGTGCCGTGGAACTGGGGAAAGGCC
AAGTACAAAGGC
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