mRNA_L-elsbetiae_contig6134.14699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6134.14699.1
Unique NamemRNA_L-elsbetiae_contig6134.14699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A6H5JTH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH4_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 3.330e-108
Identity = 157/204 (76.96%), Postives = 173/204 (84.80%), Query Frame = 1
Query:    1 RQHRSAMLAKGFGADK--DKPAAKGGRRKKAIK-SNKTPAASAPCPCFSGNPYGECCKPFHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPEHDDFGKPGWRDDILVFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLYKAPDANYKESVNVISKRKYNATAKTDKPSGFSDR 603
            RQ    +LAKGFG DK   KPA K  +  K  K   KTPAASAPCPCFSGNPYG+CCKPFHDGEK AQPVQVMRARYAAYACNMPQFIMK+THP+H+DFGKPGWRD ILVFCNNYKFTGLEVG+PE D+D P K +VYFTAMMA A+  GAVSFDERS+F+L  +G+WLY+APDANYKESVNVISKRKYNA AKTD+PSGFS R
Sbjct:   54 RQQGPILLAKGFGDDKGRSKPATKRNKDNKMAKIKTKTPAASAPCPCFSGNPYGDCCKPFHDGEKSAQPVQVMRARYAAYACNMPQFIMKTTHPDHEDFGKPGWRDSILVFCNNYKFTGLEVGQPEEDQDTPDKVYVYFTAMMAGAKVGGAVSFDERSVFVLTDDGEWLYRAPDANYKESVNVISKRKYNAAAKTDRPSGFSAR 257          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: D8LLE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE1_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 5.750e-106
Identity = 143/172 (83.14%), Postives = 158/172 (91.86%), Query Frame = 1
Query:   88 IKSNKTPAASAPCPCFSGNPYGECCKPFHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPEHDDFGKPGWRDDILVFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLYKAPDANYKESVNVISKRKYNATAKTDKPSGFSDR 603
            IK+NKTPAASAPCPCFSGNPYG+CCKPFHDGEK  QPVQVMRARYAAYACNMPQFIMK+THP+H+DF K GWRD ILVFCNNYKFTGLEVG+PE+D+D P K +VYFTAMMA A+G GAVSFDERS+FLL  +G+WLY+APDANYKESVNVISKRKYNA AKTD+PSGFS R
Sbjct:    4 IKTNKTPAASAPCPCFSGNPYGDCCKPFHDGEKSPQPVQVMRARYAAYACNMPQFIMKTTHPDHEDFAKSGWRDSILVFCNNYKFTGLEVGQPEVDQDTPDKVYVYFTAMMAGAKGGGAVSFDERSVFLLTDDGEWLYRAPDANYKESVNVISKRKYNAAAKTDRPSGFSAR 175          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A835ZDT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.940e-29
Identity = 71/182 (39.01%), Postives = 102/182 (56.04%), Query Frame = 1
Query:   19 MLAKGFGADKD--KPAAKGGRRKKAIKSNKTPAASAPCPCFSGNPYGECCKPFHDGEKGA-QPVQVMRARYAAYACNMPQFIMKSTHPEHDDF-------GKPGWRDDILVFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLYKAPDANYKESV 534
            M  KGFGA +   KP      R K  K      AS  C C SG  Y +CC+ +HDG + A  PV ++R+RY+AYA  +P +IM +THP+H+D+       G   W+  +L FC+ Y F GL+ G  E+++D    AF+ FTA + +      + F ERS FL  G+G+WLY + DA++   V
Sbjct:    1 MATKGFGAPQQPKKP------RDKVPKD-----ASTACVCGSGKAYQDCCRHYHDGTRFAPDPVALLRSRYSAYAYRLPDYIMATTHPDHEDYKPAKDKAGAKAWQQSLLNFCDAYTFQGLQPGALELEDDGA-VAFLNFTAKVNALS--QRLQFVERSKFLCGGDGRWLYVSGDADFTPEV 168          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A2H0VN27_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9 TaxID=1973935 RepID=A0A2H0VN27_9BACT)

HSP 1 Score: 105 bits (261), Expect = 2.870e-23
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  124 CPCFSGNPYGECCKPFHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPE--HDDFGKPGWRDDILVFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLYK 504
            CPC SGN Y +CC+PFH G+    P  ++RARYAAYA N+P FI+ +THPE  + +  K  W+ D+  F  +  F  L +     DE+     F+ F A +   QGD   +F ERS F+   EG+WLY+
Sbjct:    3 CPCHSGNDYKDCCEPFHKGKLPPTPTILLRARYAAYALNLPDFIIDTTHPECFYYEKDKDKWKKDLEEFSTSTIFKDLRILDTHEDEEL---GFITFVAFIK--QGDEDATFTERSYFVRE-EGKWLYR 125          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A6M1Z103_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1Z103_9BACT)

HSP 1 Score: 100 bits (248), Expect = 1.420e-21
Identity = 54/131 (41.22%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  124 CPCFSGNPYGECCKPFHDGEKGAQPV-QVMRARYAAYACNMPQFIMKSTHPEHDDF--GKPGWRDDILVFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLYKA 507
            CPC SG  Y  CC P H  E+  +   Q+MR+RY+AYA  +P++IM +THPE+  +   +  W+ +IL FC    FTGL++   E  +D   +AFV F A +     D  VSF E+S FL   +G+WLY++
Sbjct:    3 CPCHSGKSYQACCVPLHRKERLPESAEQLMRSRYSAYALQLPEYIMDTTHPENPTYLEDRSPWQIEILKFCKETTFTGLDILSTENRDD---EAFVTFFAHLIQNNLD--VSFQEKSRFLKE-DGRWLYRS 127          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A7S0HEU9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HEU9_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 6.970e-19
Identity = 52/165 (31.52%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   46 KDKPAAKGGRRKKAIKSNKTPAASAPCPCFSGNPYGECCKPFHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPEHDDF--GKPGWRDDILVFCNNYKFTGLEVGKPEI-DEDAPGKAFVYFTAMMASAQGDGAVSFD---ERSIFLLNGEGQWLYKAPDANY 522
            K  P+ KG    +  + ++ PA    C C S   Y  CC+P H+     +P+ ++RARY AYA  +P F++ +T P+H+++   +  W+ D+L FC+ +   GLEVG+ +  D  A G A        A     GA+      E S  +    G WLY   D  Y
Sbjct:   96 KSAPSGKGFGGAQTARFDRRPAKGVACACGSAQSYEACCQPCHEAGLATEPLALIRARYTAYAYRLPDFLIDTTSPDHEEWETDRTAWKKDLLTFCDTFVCEGLEVGQQQAGDAAAVGGADAVQVPFRAKLVQKGAIKMLDLLETSTLVRGAAGGWLYAKGDVEY 260          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A7V4V0Y6_9PROT (Zinc chelation protein SecC n=1 Tax=Campylobacterales bacterium TaxID=2268180 RepID=A0A7V4V0Y6_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 1.960e-18
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  124 CPCFSGNPYGECCKPFHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPEHDDF--GKPGWRDDILVFCNNYKFTGLEVGKPEIDE-DAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLY 501
            CPC SG  Y +CCKP+H G K    + +M++RY+AY      +I+K+TH ++ DF   K  W+ +I+ FC N  F GL++    +D  D   +AFV F A ++S       +  E+S F L  +G WLY
Sbjct:    5 CPCGSGVKYKKCCKPYHSGAKAPNALVLMKSRYSAYVVGDSNYIIKTTHKDNYDFRNDKKIWKSEIIGFCQNTDFYGLDI----LDFIDGADEAFVIFKASLSSG------NMIEKSRF-LRVDGSWLY 122          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A151CDG1_9PROT (Uncharacterized protein n=1 Tax=Sulfurovum riftiae TaxID=1630136 RepID=A0A151CDG1_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 7.020e-18
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  115 SAPCPCFSGNPYGECCKPFHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPEHDDFGKP--GWRDDILVFCNNYKFTGLEVGKPEIDEDAPGK-AFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLY 501
            +APCPC SG  Y +CC  +H G      + +M++RYAAYA ++P +I+K+THP++ DF      WR+ I +F    +F  L++    ID    G+ A+V F A ++S +        E+S F L   G+WLY
Sbjct:    7 NAPCPCGSGKKYKKCCLVYHKGALAPDALALMKSRYAAYAADLPDYIIKTTHPDNPDFTADVQTWRESIRLFTQQTEFLHLKI----IDFRENGEEAYVAFAATLSSGE------LKEKSRF-LKVSGKWLY 127          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A7V9UIY6_9BACT (Uncharacterized protein n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7V9UIY6_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 1.100e-17
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  124 CPCFSGNPYGECCKPFHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPEHDD--FGKPGWRDDILVFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLYK 504
            CPC S   Y ECC+  HDG      + +MR+RY+AYA ++P++IM++THP+H D    K  W+  IL F    +F  L++      +D   +AFV F A ++  Q    +   E+S FL  G  QWLY+
Sbjct:    5 CPCCSKKIYQECCQLMHDGAFPENALALMRSRYSAYALSLPEYIMRTTHPDHGDRLLNKEEWKMKILDFSRTTQFHRLDIVN---FQDGADEAFVTFIAHLS--QEKQPMQLHEKSRFLKIGS-QWLYR 127          
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Match: A0A7Y5NW54_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5NW54_9DELT)

HSP 1 Score: 87.0 bits (214), Expect = 9.260e-17
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  100 KTPAASAPCPCFSGNPYGECCKPFHDGEKGA-QPVQVMRARYAAYACNMPQFIMKSTHPEHDD---FGKPGWRDDILVFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSIFLLNGEGQWLY 501
            + P  ++ CPC SG PYGECC+P+H   + A  P  +MR+RY+A+A     +++ + HPEH +     +   R  +   C ++++TGL + +  +D D   +  V F A +     D  +SF ERS F   G G W Y
Sbjct:    5 RAPKRTSACPCQSGKPYGECCRPYHRRTQEAPDPEALMRSRYSAFAIGEIDYLVATLHPEHAEKKNLPEEMLRSSLRAACRDHRYTGLTILETSVDGD---RGMVRFVAKVFQRGKD--ISFSERSTFERVG-GAWRY 136          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6134.14699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTH4_9PHAE3.330e-10876.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLE1_ECTSI5.750e-10683.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDT4_9STRA1.940e-2939.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2H0VN27_9BACT2.870e-2341.86Uncharacterized protein n=1 Tax=Chlamydiae bacteri... [more]
A0A6M1Z103_9BACT1.420e-2141.22Uncharacterized protein n=1 Tax=Chlamydiae bacteri... [more]
A0A7S0HEU9_9EUKA6.970e-1931.52Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7V4V0Y6_9PROT1.960e-1837.98Zinc chelation protein SecC n=1 Tax=Campylobactera... [more]
A0A151CDG1_9PROT7.020e-1837.12Uncharacterized protein n=1 Tax=Sulfurovum riftiae... [more]
A0A7V9UIY6_9BACT1.100e-1737.98Uncharacterized protein n=1 Tax=Parachlamydiaceae ... [more]
A0A7Y5NW54_9DELT9.260e-1734.06Uncharacterized protein n=1 Tax=Polyangiaceae bact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6134contigL-elsbetiae_contig6134:534..4788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.8
Seed ortholog evalue5.9e-18
Seed eggNOG ortholog709032.Sulku_0548
Preferred nameychJ
KEGG koko:K09858
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SEC-C motif
EggNOG OGs1Q5V3@1224,2YPTX@29547,42UFW@68525,COG3012@1,COG3012@2
COG Functional cat.S
Best tax levelEpsilonproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_002290.1
Exons4
Model size1386
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6134.14699.1prot_L-elsbetiae_contig6134.14699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6134 552..4008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.4398863-UTR-L-elsbetiae_contig6134:533..5511622816671.4398863-UTR-L-elsbetiae_contig6134:533..551Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6134 534..551 +
1691683728.4312563-UTR-L-elsbetiae_contig6134:533..5511691683728.4312563-UTR-L-elsbetiae_contig6134:533..551Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6134 534..551 +
1622816671.5005517-UTR-L-elsbetiae_contig6134:4008..47881622816671.5005517-UTR-L-elsbetiae_contig6134:4008..4788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6134 4009..4788 +
1691683728.4833565-UTR-L-elsbetiae_contig6134:4008..47881691683728.4833565-UTR-L-elsbetiae_contig6134:4008..4788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6134 4009..4788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.4522057-CDS-L-elsbetiae_contig6134:551..7691622816671.4522057-CDS-L-elsbetiae_contig6134:551..769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 552..769 +
1691683728.443715-CDS-L-elsbetiae_contig6134:551..7691691683728.443715-CDS-L-elsbetiae_contig6134:551..769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 552..769 +
1622816671.463532-CDS-L-elsbetiae_contig6134:1868..19701622816671.463532-CDS-L-elsbetiae_contig6134:1868..1970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 1869..1970 +
1691683728.4544213-CDS-L-elsbetiae_contig6134:1868..19701691683728.4544213-CDS-L-elsbetiae_contig6134:1868..1970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 1869..1970 +
1622816671.4755704-CDS-L-elsbetiae_contig6134:2674..27531622816671.4755704-CDS-L-elsbetiae_contig6134:2674..2753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 2675..2753 +
1691683728.4644504-CDS-L-elsbetiae_contig6134:2674..27531691683728.4644504-CDS-L-elsbetiae_contig6134:2674..2753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 2675..2753 +
1622816671.4866104-CDS-L-elsbetiae_contig6134:3819..40081622816671.4866104-CDS-L-elsbetiae_contig6134:3819..4008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 3820..4008 +
1691683728.4736624-CDS-L-elsbetiae_contig6134:3819..40081691683728.4736624-CDS-L-elsbetiae_contig6134:3819..4008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6134 3820..4008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6134.14699.1

>prot_L-elsbetiae_contig6134.14699.1 ID=prot_L-elsbetiae_contig6134.14699.1|Name=mRNA_L-elsbetiae_contig6134.14699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
MLAKGFGADKDKPAAKGGRRKKAIKSNKTPAASAPCPCFSGNPYGECCKP
FHDGEKGAQPVQVMRARYAAYACNMPQFIMKSTHPEHDDFGKPGWRDDIL
VFCNNYKFTGLEVGKPEIDEDAPGKAFVYFTAMMASAQGDGAVSFDERSI
FLLNGEGQWLYKAPDANYKESVNVISKRKYNATAKTDKPSGFSDR*
back to top

mRNA from alignment at L-elsbetiae_contig6134:534..4788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6134.14699.1 ID=mRNA_L-elsbetiae_contig6134.14699.1|Name=mRNA_L-elsbetiae_contig6134.14699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4255bp|location=Sequence derived from alignment at L-elsbetiae_contig6134:534..4788+ (Laminarionema elsbetiae ELsaHSoW15)
AGACAACACCGTTCCGCCATGCTCGCCAAGGGCTTCGGCGCCGACAAGGA CAAGCCGGCGGCGAAAGGAGGGAGGCGCAAGAAGGCCATCAAGTCCAACA AAACTCCCGCCGCTTCCGCGCCCTGCCCGTGCTTCTCCGGAAACCCGTAC GGGGAGTGCTGCAAGCCCTTCCATGACGGCGAGAAGGGCGCGCAGCCGGT GCAGGTCATGAGGGCGCGGTACGCGGCGTACGCATGGTGAGCAAGTGCGC GTCGAGTGCATGCGCACACCGTCCGTGTCCCCGGAGCCACAGCCATCGTG CAGCTTATGTGTTGTTCGTGCCTTGCACATTTCAATGAAAGAGCACAGCA CTTTCGCGGTAAACAAGGGTGACGCACGCGTGTATACACAGTAGTTTAGT GTAAACACGGACACCAAGGCACGGCACCGCGTCTCTTTTATGGTTCACTC TGTCCAGACCTCGTGTGTCGAGTGGGAGCGCGATGGGCTTGATGATGGGG CCCGACTTTCTTCTTTTGTCCGACTTGCCGCCTGCGACATGTGATTTCCT GGCGGGGCGTCGTGTTGTCGTGTACGTGTCGTATCTCTGATTTTCACCTA TTTTGCTGCTGTGGGTATTCACCCTACCGTGAGTAGGTGACACAAGATAC CACACCCCCTGGACACATTTTCAAAGCTCGATTCCTCCCCGGCAAGAAGA GTGCCAGTGCTGAAAGGGCATGACATTGGAAAGATCTAGTGGAGGACTGT CCAAAAACGTGTCGTTTTGGTGTTACATGTTGTGGCACCCTCTTCGTTAC GGAGTAATGGAGCTCTAAAGATCGGTCCAGGGGGTGTGTTATGAAGTATT GTGTCATTTACGGTATGACCACGGGAGGCATTCGCGTCAGTTGGACCAAC TTGGTTTTTTTGGGGTACCGAGCAGAGATCGGAACTGTTTTAAATCTGAA GGCAGCAACAACAATAACAGCAGCAACAACAATACAACGACAAGTTTGAA GCAACAAAAACGACACATACTTCTTTGAGCAACTACCGAAACGGAGCACA ATTGCTAATAATGCTTTACCCACAAGTTCGATGACACGTGAAAGAACCGC GTGGGTAAGAGCACCCGATGACGTTTGCAGCAGTATCAACGCATTAGCGT AGTCTGATCTTCAAAAATATCAACCGCGGGTTCAACGCTATCTAGTCCAG TATCTTCAACGGCAGCAGCAAGTAGTGCGCGTGGCTGTGCCCTGCGCTTG TACTCCTCTGAAACCGTCACCCTGGGCGGGGCGTGGTTGCCTCCTGCTGT GCGTCTTGCCGCCTGACCCTCCTCCTCATCCCCAGCAACATGCCCCAGTT CATCATGAAGTCGACGCATCCCGAGCACGACGACTTCGGAAAGCCCGGCT GGCGAGACGACATCCTCGTTTTCTGCAACAACTACAAGTGAGCAGAGATG TATGCGTAGAAGTATGTATGGTGTCTTGGTGCTTGTTTGTCTGTGCTCCG ATGATGGCGCGTTCGTCCCAGCGGTGGTGTCGCTTTTTTTTTCTTCTACC CCGTCAATGTGATGACAACGAACACAAACAACCAACAACAACTTGGTCTG CCAGACATTTACGGCTGATAGCCTGTGTTGACAGCTTCTCCGACGCGGTG TGTTACGTAGCGCTAAATTACAGCCAGAAAACTAATTCCTCACGAAAAAG AAAAGATGGATGCATCCATGAAGGATTGTTCAAGAAAACAGCTCTCCCCA CAAGTCTTTCGAAATGCTGGCAAAAAGGTTTGAAACCACCCAATGAAGCG GGCGCGCAGTGGAGAGAAGGCGTGCGGGAAATACGAATCAACAGTAGTTT TTTCCCGTTCGTGTGTACGTAGTCGTGGCAATCCCGCGGCCCATCTTGTG CGCGGCCACACACCGCATCGTTTTATTTACCCTAACGCGCATTTCTGGGT GCTCTCGCGGATGTTTGTCTGCGCTTGTAGTGAACGAATCTACACGCCTC GTGTGTAGGAAGTATTAAGACATCCCGCCGCTCGAAGTCCGCCTTGTATT TCGGGCGATCTCTTGCGTGAAAAATAGTGTGCGTGTACCCTTGGTCTACC GGGGACATTTCCCTCTCTCTCTTCTTTTTTTCGCACGAAAGGTTCACAGG TCTGGAAGTAGGCAAGCCGGAAATCGACGAGGACGCGCCTGGAAAGGCGT TTGTATACTTCACAGCCATGGTGAGTAACGGCAGGAGAACGTTTGGAATT TGAGCACGCCCAAAAATTAAAAGAGTGCAAAGTTCGAAAGTGCGAACGCG AAGATGCATGAGGTGGCGTGCGACACCTCACGAAGCAGGTGAAGGCCCGA GCTCCGCGTGCGTAATAAGTTAGCACCCTGTCGTTCGGCCGACGGGCGTG CGTGCATGAGCCTTTTGCACACGTGTTGCACCTCTCACAAAAAAAAAAAA AAAAAAACTGTCTTCATAATTGGGGGCATTCGAGTTGGGCGGGGTTTTGT TTTCGTGTCCCCTCCCTATTTGCTTTTGCTCTGAACCCACGCGGCCGTGT ACTTCGTGAATGCTGATGCTCCTCACATACCCAACCGGTTGCAACGAAAA GAGCAGGAGGCCTCAGGATGCCTATTCCTTACGTCCGCAAGGAGTCGCTA TTCCGCAATTTGTCTCAGAAGAGGAGAGCTGCTGAGTGACCGGTGCACGA CAGAAACTAAAGTGCTGCTTTTTTCAGCTCAATTCCGCAGCTTGGGAGGC AATTTCAATCGTGAGCGTCCAGCTCAGGAGTGCACTCGAAACTCAGCGAC CGTAGAGATAGTTGGGCATAGAAGGGACACCGGGCTGGATAATTAGGGAT CAACTCTCTGTGGCGCTCAAACCAACTCCGTCTCTCTGATCAAGAGAGAG GCAAAGCACGCAAAGCACGCTCGCCTGTCTGCCTCCAAAATGATCTGAAA ACGCTCCTTCGCCACGTCCGATCGAGCGACTTTAGAGGGGAGCGTCCAGC TCTGTGTTTGGCCAATCGATCTGCCACTTTAGCACTCTGTTGGTGATGTG TACAGAAACAGAAAGCTATAGGTCCTGGATAACTAGGGATCAACACTACA GCAAGAGCTTTGGTGAAATAACTGTGCTCTCCGGTGTGTAAGTTCAATCG GAGGGGCTGCGTGAGATCGTATTTTGAGGACAAAAAAAAAAAAAGAGTCG TTTTTGTGGGAGCTGCAACACGTCTGTTTGACGCCACGAAAATTAAAGAT CAGACACCACACACATGTTCTCCTGTTCTACCGCAGATGGCGAGTGCGCA GGGAGACGGGGCCGTGTCTTTCGACGAGAGGAGCATTTTCCTGCTCAACG GGGAGGGGCAGTGGTTGTACAAAGCCCCCGACGCCAACTACAAGGAGTCC GTCAACGTGATCAGCAAGCGGAAGTACAACGCGACCGCCAAGACGGACAA GCCCAGCGGGTTCTCTGATCGATGATGGAACGACTGACGATGAGGCAGAC ACAGGAGGGGAGAAAAAGACACAGAACACACAAACAGGGCAACGGCACAC ACACACGCAAGGCCCGCAAAACAGCGCCTTGGCGTTGAGAATTTCCATCT TCTTTCGGATCTTCGGCGGTCAATCGCGCCGTGCTTTCGTGTCTGGTTTT CGACCCGGTGCCGCGCGTAAACGCATTACACATGAAACCCTCCCGCCCGC TGTTTTCTTGGAGAGGCTGCTGTCAGGTGTGTCGGTCCGTGACCACGGCA GTCCTTTCTACACAGGCAGAACGACTAATAGGGAGTAGGTGCTCAGTGTG TGGACAGAGTGGCTGAGCAGCGTAAACGCGACCGCGACACCGGCAAGCAT CACCCATGTCGCGTTCAACAGCGGTAGTCGACTTCTACGGCTGACGGTTT GGGCGCGGCGCCCTTGCTTTCTCGTCGCCCCTCGCGAGCCTCAGGAGACG CGCGCGTGGACAACTGGCCCGTCCTTTACATGTGTTTGGTTCGGCCTTGT AGGCGATACCCCGCGAAAGCTAGATTCAACCATCCTCTCGAGGAACAACA AAGCAGAGCGCACACATGTCAGGGCCGGAGGGGGAAGCACTTTCTCTGCT GTTGCGGGAATCCCTCAACACATTTACTAGCCTTCGCTTCTGCACAAAAA AAAAATACAAGCGGCGGCCTCTATCGAGCTGGGCGTTCCAACGACAACAG GGATGGAAAAAAAAACTACGCAGACGCACGCAAGATTTCTACCCAATCCC CCCAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6134:534..4788+

>mRNA_L-elsbetiae_contig6134.14699.1 ID=mRNA_L-elsbetiae_contig6134.14699.1|Name=mRNA_L-elsbetiae_contig6134.14699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig6134:534..4788+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGCCAAGGGCTTCGGCGCCGACAAGGACAAGCCGGCGGCGAAAGG
AGGGAGGCGCAAGAAGGCCATCAAGTCCAACAAAACTCCCGCCGCTTCCG
CGCCCTGCCCGTGCTTCTCCGGAAACCCGTACGGGGAGTGCTGCAAGCCC
TTCCATGACGGCGAGAAGGGCGCGCAGCCGGTGCAGGTCATGAGGGCGCG
GTACGCGGCGTACGCATGATGCTCGCCAAGGGCTTCGGCGCCGACAAGGA
CAAGCCGGCGGCGAAAGGAGGGAGGCGCAAGAAGGCCATCAAGTCCAACA
AAACTCCCGCCGCTTCCGCGCCCTGCCCGTGCTTCTCCGGAAACCCGTAC
GGGGAGTGCTGCAAGCCCTTCCATGACGGCGAGAAGGGCGCGCAGCCGGT
GCAGGTCATGAGGGCGCGGTACGCGGCGTACGCATGCAACATGCCCCAGT
TCATCATGAAGTCGACGCATCCCGAGCACGACGACTTCGGAAAGCCCGGC
TGGCGAGACGACATCCTCGTTTTCTGCAACAACTACAACAACATGCCCCA
GTTCATCATGAAGTCGACGCATCCCGAGCACGACGACTTCGGAAAGCCCG
GCTGGCGAGACGACATCCTCGTTTTCTGCAACAACTACAAGTTCACAGGT
CTGGAAGTAGGCAAGCCGGAAATCGACGAGGACGCGCCTGGAAAGGCGTT
TGTATACTTCACAGCCATGGTTCACAGGTCTGGAAGTAGGCAAGCCGGAA
ATCGACGAGGACGCGCCTGGAAAGGCGTTTGTATACTTCACAGCCATGAT
GGCGAGTGCGCAGGGAGACGGGGCCGTGTCTTTCGACGAGAGGAGCATTT
TCCTGCTCAACGGGGAGGGGCAGTGGTTGTACAAAGCCCCCGACGCCAAC
TACAAGGAGTCCGTCAACGTGATCAGCAAGCGGAAGTACAACGCGACCGC
CAAGACGGACAAGCCCAGCGGGTTCTCTGATCGATGAATGGCGAGTGCGC
AGGGAGACGGGGCCGTGTCTTTCGACGAGAGGAGCATTTTCCTGCTCAAC
GGGGAGGGGCAGTGGTTGTACAAAGCCCCCGACGCCAACTACAAGGAGTC
CGTCAACGTGATCAGCAAGCGGAAGTACAACGCGACCGCCAAGACGGACA
AGCCCAGCGGGTTCTCTGATCGATGA
back to top