mRNA_L-elsbetiae_contig6129.14692.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6129.14692.1
Unique NamemRNA_L-elsbetiae_contig6129.14692.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6129.14692.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.050e-70
Identity = 115/136 (84.56%), Postives = 128/136 (94.12%), Query Frame = 1 
Query:    1 SLMDANPNRAIFLLHNWPDVVSSVEALVSALLCKKGRAARNVRKAMEKLCLALAAFIDPTSNGHGIRMEEEGGWSAGDGSGKLGKLRHSMEKLQEALVAWPKSAKITQEEVDALHKDHCEFLMRFKSLVSSTNRPG 408
            +LM+ANPNRAIFLLH WPDVVS++E LV+ALL K GRAARNVRKAMEKLCLA+AAFIDP+++GHG+R EEEGGWSAGDGSG+LG+LRHSMEKLQ AL+AWPKSAKITQEEVDALHKDH EFLMRF SLVSSTNRPG
Sbjct:  876 TLMEANPNRAIFLLHQWPDVVSALETLVAALLSKNGRAARNVRKAMEKLCLAMAAFIDPSTHGHGMRQEEEGGWSAGDGSGQLGRLRHSMEKLQSALIAWPKSAKITQEEVDALHKDHNEFLMRFHSLVSSTNRPG 1011
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BLAST of mRNA_L-elsbetiae_contig6129.14692.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.810e-62
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = 1 
Query:    1 SLMDANPNRAIFLLHNWPDVVSSVEALVSALLCKKGRAARNVRKAMEKLCLALAAFIDPTSNGHGIRMEEEGGWSAGDGSGKLGKLRHSMEKLQEALVAWPKSAKITQEEVDALHKDHCEFLMRFKSLVS 390
            +LM+ANP RAIFLLH WPDVV ++E LV+ALL K GRAARNVRKAMEKLCLA+AAFIDP+++GHG+R EEEGGWSAGD SG+LGKLRHSME+LQ AL+AWPKSA ITQ+EVDALHKDH EFLMRF SL +
Sbjct:  391 TLMEANPKRAIFLLHQWPDVVLALETLVAALLSKNGRAARNVRKAMEKLCLAMAAFIDPSTHGHGMRQEEEGGWSAGDESGQLGKLRHSMEQLQSALIAWPKSANITQDEVDALHKDHNEFLMRFHSLAT 520
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6129.14692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXN7_ECTSI1.050e-7084.561,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L5X7_9PHAE3.810e-6278.46GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6129contigL-elsbetiae_contig6129:124..2406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue5.5e-60
Seed eggNOG ortholog2880.D7FXN7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Ec32 ortholog description1,3-beta-glucan synthase, family GT48
Ec32 orthologEc-28_002440.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size410
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6129.14692.1prot_L-elsbetiae_contig6129.14692.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6129 130..2406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.7328484-UTR-L-elsbetiae_contig6129:123..1291622816670.7328484-UTR-L-elsbetiae_contig6129:123..129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6129 124..129 +
1691683727.9039822-UTR-L-elsbetiae_contig6129:123..1291691683727.9039822-UTR-L-elsbetiae_contig6129:123..129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6129 124..129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.7432983-CDS-L-elsbetiae_contig6129:129..3231622816670.7432983-CDS-L-elsbetiae_contig6129:129..323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6129 130..323 +
1691683727.918055-CDS-L-elsbetiae_contig6129:129..3231691683727.918055-CDS-L-elsbetiae_contig6129:129..323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6129 130..323 +
1622816670.7547026-CDS-L-elsbetiae_contig6129:1028..11151622816670.7547026-CDS-L-elsbetiae_contig6129:1028..1115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6129 1029..1115 +
1691683727.9335415-CDS-L-elsbetiae_contig6129:1028..11151691683727.9335415-CDS-L-elsbetiae_contig6129:1028..1115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6129 1029..1115 +
1622816670.7668102-CDS-L-elsbetiae_contig6129:2285..24061622816670.7668102-CDS-L-elsbetiae_contig6129:2285..2406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6129 2286..2406 +
1691683727.949163-CDS-L-elsbetiae_contig6129:2285..24061691683727.949163-CDS-L-elsbetiae_contig6129:2285..2406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6129 2286..2406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6129.14692.1

>prot_L-elsbetiae_contig6129.14692.1 ID=prot_L-elsbetiae_contig6129.14692.1|Name=mRNA_L-elsbetiae_contig6129.14692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MDANPNRAIFLLHNWPDVVSSVEALVSALLCKKGRAARNVRKAMEKLCLA
LAAFIDPTSNGHGIRMEEEGGWSAGDGSGKLGKLRHSMEKLQEALVAWPK
SAKITQEEVDALHKDHCEFLMRFKSLVSSTNRPG
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mRNA from alignment at L-elsbetiae_contig6129:124..2406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6129.14692.1 ID=mRNA_L-elsbetiae_contig6129.14692.1|Name=mRNA_L-elsbetiae_contig6129.14692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2283bp|location=Sequence derived from alignment at L-elsbetiae_contig6129:124..2406+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCTGATGGATGCCAACCCGAACCGAGCGATCTTCCTCCTCCACAACTG
GCCGGACGTGGTGTCTTCCGTCGAGGCCCTCGTGTCGGCGCTCCTCTGCA
AGAAGGGCCGCGCGGCGAGGAACGTCCGCAAGGCCATGGAGAAGCTCTGC
CTGGCCCTGGCCGCCTTCATCGACCCGACTTCGAACGGCCACGGGATAAG
GTGCGCGCGTGATAGGCGTACATTACCCGTAGGTGACATGACGCAAGATG
CCACCCCCACCCCCTGGACCGAGCCCTCGAGCCCCATTCATTACTCCGTA
ACGCCAGAGCACCACCAAACGGCACATTTTCGGACACTCCCCCCTCGACT
ATTTATATCTTATTTCCAACGCCACCATCCCCCTTTCGGCACTGACACTG
GCATTCATTCGTCTTCCTGGGGAGGAATCGAGCTTTGAAAATCTGTCCGG
GGGGGGGGGGGGGTATCTTGAGTCACCTACGGTACGTGCATACCTTTACG
TGGAAGTGTGTACAGGGTCAGCACTGTGTGCGGTGTTTTTCTTTGCAGGC
ATGGATAAATAATCCAGGTATGTATGATGATGCATCGAATCGAAGTGTTT
TTTTATTTTTCCTTTGCCCGCAGCAGCGGTTGTAAATTTGGTGATGAACG
GAGGGCTGCCGCCGCGGAGGGCGACAATATAATTGGACAGACTTCTGTCC
GGCCAGCCCACACCCCGACACCGTGGGGGTTGCTCCACAGGTGTATGCTT
CTTGATCATGCATCGCGCTTTCTGGCGGCCTCGCTTGTAATTGACTGCTC
GCTTTCGTTGGTTCACACCCTCTCCCCCCCGCCGCCGCCGCCGTGGGGGC
CCCGTGGCTGTGCTGTGCTTTTCCCGTGATTGATTGTTTTCGGCGGGGCT
CGTAGGATGGAAGAGGAAGGGGGGTGGTCGGCTGGGGACGGGAGCGGCAA
GCTCGGGAAGCTGCGGCACAGCATGGAGAAGCTGCAAGAAGCGTGAGTTT
AGTGTGTTTTTATGCGATTCGTTTCTGTTCGCCGGGTTCGGCCGGTTTTT
GTTGCTGTTGCTGTTGTTGGTGTTATTTCGCCGCACAGGCTTTTTTTGTT
CTTTGTCCTGTGCGGACACTTCTGGTCCATTCTGTTTTTCGTGTTTTCAG
TGTATGTATGCGCCCTTTTTAGGGTAAGCTCTGTTCTTGTGACCACAGAG
ATCGACCGCGTCGGTGTTTGGATTAGTACAGACTCATGGAAAGAGAGATC
GGAACGGTTTTTCATGTAAAGACAACAGCAACAACAACAACAAGAAGGTT
GGAACGGTTTTTAATGTGAAGACAACAGCAGCAACAACAACAAGGTTGGA
GCGGTTTTTAATGTGAAGACAATATATCAACAACAACAACAACAACAGCA
AGCGAGAGAGGTGGGAACGGTTTTTAACGTAAAGACGACAACAACAACAA
CAACAACAACAACAACAACAACAAGGTTGAAACGGTTTTTAATGTGAAGA
TAACAGCAGCAACAACAACAGGGTTGGAGCGGTTTTTAATATTAAGACAA
AATATCAACAACAACAATAACAACAAGCGAGAGAGATCGGAACGGTTTTT
AATGTGAAGACAACAACAACAACCACAACAAGCGAGAGCCCCTGCTGCCT
TGCTCTTGCTTCTCCCCTAGGAAGGGGTCCTCTTTTCGCGGTTCTGGTTA
TCCCGGGAGAGGGAGGCGTGTGCCGTCCCACGAGCCGTAACGCCGCCGGC
GACGAGGCCAAAAGAACGCGGCAGACAGCGGCATACGTGTTGTTGCTTTG
TGGTGTGGTAGTTTGTCGTCCGATTGGGCGTGGCGTATGTTTATCCCTTC
TGTGTGACCCCGGTTGGATCGTCTAGCTAGTCGCACGCTAGTCGTAGTGG
AGGAAGGGGGCCAGTGGGGCAGACGACGAATAAGCCAATAATGGGAAGGA
AACCACACACACACACACACACACACACACATGTACGAAAAACACGCATA
GCTAGTCGTAGTGGAGGAAGGGGGCCTGTGGGGCAGACGACGAATAAGCC
AATAATGGGAGTGACACACACACACCCTCACACACACACACACACACACG
AAAACATGCAACGCGTCTGTCTCTTTCCCTGATTTGTCACCGCATTCGTT
TGTGCTGCGAAGGCTGGTTGCGTGGCCCAAGTCGGCGAAGATAACGCAGG
AGGAGGTGGACGCCCTGCACAAGGATCACTGCGAGTTCCTCATGAGGTTC
AAGAGCCTCGTTTCCAGCACCAACCGGCCAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6129:124..2406+

>mRNA_L-elsbetiae_contig6129.14692.1 ID=mRNA_L-elsbetiae_contig6129.14692.1|Name=mRNA_L-elsbetiae_contig6129.14692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig6129:124..2406+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGCCAACCCGAACCGAGCGATCTTCCTCCTCCACAACTGGCCGGA
CGTGGTGTCTTCCGTCGAGGCCCTCGTGTCGGCGCTCCTCTGCAAGAAGG
GCCGCGCGGCGAGGAACGTCCGCAAGGCCATGGAGAAGCTCTGCCTGGCC
CTGGCCGCCTTCATCGACCCGACTTCGAACGGCCACGGGATAAGATGGAT
GCCAACCCGAACCGAGCGATCTTCCTCCTCCACAACTGGCCGGACGTGGT
GTCTTCCGTCGAGGCCCTCGTGTCGGCGCTCCTCTGCAAGAAGGGCCGCG
CGGCGAGGAACGTCCGCAAGGCCATGGAGAAGCTCTGCCTGGCCCTGGCC
GCCTTCATCGACCCGACTTCGAACGGCCACGGGATAAGGATGGAAGAGGA
AGGGGGGTGGTCGGCTGGGGACGGGAGCGGCAAGCTCGGGAAGCTGCGGC
ACAGCATGGAGAAGCTGCAAGAAGCGATGGAAGAGGAAGGGGGGTGGTCG
GCTGGGGACGGGAGCGGCAAGCTCGGGAAGCTGCGGCACAGCATGGAGAA
GCTGCAAGAAGCGCTGGTTGCGTGGCCCAAGTCGGCGAAGATAACGCAGG
AGGAGGTGGACGCCCTGCACAAGGATCACTGCGAGTTCCTCATGAGGTTC
AAGAGCCTCGTTTCCAGCACCAACCGGCCAGGCGCTGGTTGCGTGGCCCA
AGTCGGCGAAGATAACGCAGGAGGAGGTGGACGCCCTGCACAAGGATCAC
TGCGAGTTCCTCATGAGGTTCAAGAGCCTCGTTTCCAGCACCAACCGGCC
AGGC
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