mRNA_L-elsbetiae_contig6122.14685.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6122.14685.1
Unique NamemRNA_L-elsbetiae_contig6122.14685.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6122.14685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6122contigL-elsbetiae_contig6122:8023..8901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size879
Cds size879
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.1634772-CDS-L-elsbetiae_contig6122:8022..89011622816670.1634772-CDS-L-elsbetiae_contig6122:8022..8901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 8023..8901 +
1691683727.5346541-CDS-L-elsbetiae_contig6122:8022..89011691683727.5346541-CDS-L-elsbetiae_contig6122:8022..8901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 8023..8901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6122.14685.1prot_L-elsbetiae_contig6122.14685.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6122 8023..8901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6122.14685.1

>prot_L-elsbetiae_contig6122.14685.1 ID=prot_L-elsbetiae_contig6122.14685.1|Name=mRNA_L-elsbetiae_contig6122.14685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp
GAQVYQGVATTTAAAAAAGFAKHRRACLRGGSAVIHATSGEADILAADIL
AADILAADILADILAADILAADILAADILAADILAYTFFVLDVDRHRVSR
AELDSALVLGDPAVVFLAVVGLLPAVDVLYHRRGRRRRERPWTGRRDYPR
WASPAKSCSGRERTLFLLRDSPTNAAAAAVPSTALAQPWRCLGSGGDARS
TGTRRRRRSAHRARPGGPAAAPTGRFPRQAPSVAGNKRLEPVSASPVTTT
AAALRPGQRDRRRQGGGPGIGHRRRQDVHHRPHGAGEYQRSEE
back to top

mRNA from alignment at L-elsbetiae_contig6122:8023..8901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6122.14685.1 ID=mRNA_L-elsbetiae_contig6122.14685.1|Name=mRNA_L-elsbetiae_contig6122.14685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=879bp|location=Sequence derived from alignment at L-elsbetiae_contig6122:8023..8901+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGCCCAGGTCTATCAGGGTGTCGCCACCACCACCGCCGCTGCCGCCGC
CGCCGGATTTGCCAAGCACCGGCGGGCTTGTCTGCGCGGCGGCTCCGCTG
TCATCCACGCCACCAGCGGTGAGGCCGACATCCTCGCTGCCGACATCCTC
GCTGCCGACATCCTCGCTGCCGACATCCTCGCCGACATCCTCGCTGCCGA
CATCCTCGCTGCCGACATCCTCGCTGCCGACATCCTCGCTGCCGACATCC
TCGCCTACACTTTCTTCGTCCTCGATGTCGACCGTCATCGAGTGTCTCGA
GCTGAACTGGACAGTGCCCTCGTCCTCGGAGACCCAGCCGTCGTCTTCCT
CGCCGTCGTCGGTCTCCTCCCCGCCGTCGATGTCCTCTATCACCGCCGCG
GTCGGCGTCGGCGGGAGCGCCCGTGGACCGGCCGGAGAGATTATCCCCGC
TGGGCCTCCCCGGCCAAGTCGTGCTCCGGCCGAGAGAGGACGCTGTTCCT
GCTCCGCGACAGCCCCACCAACGCCGCCGCCGCCGCCGTTCCAAGCACCG
CGCTGGCGCAGCCCTGGCGTTGTCTGGGAAGCGGTGGTGACGCCCGAAGC
ACCGGCACCCGCCGCCGCCGTCGCAGCGCACACCGGGCAAGACCCGGCGG
ACCCGCCGCCGCCCCCACCGGCCGCTTCCCGAGACAAGCCCCGTCGGTGG
CCGGAAACAAGAGGCTTGAGCCCGTCAGCGCTTCCCCTGTCACCACCACC
GCCGCCGCCCTCCGGCCGGGACAACGAGACCGGCGGCGTCAAGGCGGAGG
GCCCGGCATCGGCCACCGGAGGAGACAGGACGTCCACCACCGCCCACATG
GCGCGGGAGAATATCAACGCTCCGAGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6122:8023..8901+

>mRNA_L-elsbetiae_contig6122.14685.1 ID=mRNA_L-elsbetiae_contig6122.14685.1|Name=mRNA_L-elsbetiae_contig6122.14685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1758bp|location=Sequence derived from alignment at L-elsbetiae_contig6122:8023..8901+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGCCCAGGTCTATCAGGGTGTCGCCACCACCACCGCCGCTGCCGCCGC
CGCCGGATTTGCCAAGCACCGGCGGGCTTGTCTGCGCGGCGGCTCCGCTG
TCATCCACGCCACCAGCGGTGAGGCCGACATCCTCGCTGCCGACATCCTC
GCTGCCGACATCCTCGCTGCCGACATCCTCGCCGACATCCTCGCTGCCGA
CATCCTCGCTGCCGACATCCTCGCTGCCGACATCCTCGCTGCCGACATCC
TCGCCTACACTTTCTTCGTCCTCGATGTCGACCGTCATCGAGTGTCTCGA
GCTGAACTGGACAGTGCCCTCGTCCTCGGAGACCCAGCCGTCGTCTTCCT
CGCCGTCGTCGGTCTCCTCCCCGCCGTCGATGTCCTCTATCACCGCCGCG
GTCGGCGTCGGCGGGAGCGCCCGTGGACCGGCCGGAGAGATTATCCCCGC
TGGGCCTCCCCGGCCAAGTCGTGCTCCGGCCGAGAGAGGACGCTGTTCCT
GCTCCGCGACAGCCCCACCAACGCCGCCGCCGCCGCCGTTCCAAGCACCG
CGCTGGCGCAGCCCTGGCGTTGTCTGGGAAGCGGTGGTGACGCCCGAAGC
ACCGGCACCCGCCGCCGCCGTCGCAGCGCACACCGGGCAAGACCCGGCGG
ACCCGCCGCCGCCCCCACCGGCCGCTTCCCGAGACAAGCCCCGTCGGTGG
CCGGAAACAAGAGGCTTGAGCCCGTCAGCGCTTCCCCTGTCACCACCACC
GCCGCCGCCCTCCGGCCGGGACAACGAGACCGGCGGCGTCAAGGCGGAGG
GCCCGGCATCGGCCACCGGAGGAGACAGGACGTCCACCACCGCCCACATG
GCGCGGGAGAATATCAACGCTCCGAGGAGGGCGCCCAGGTCTATCAGGGT
GTCGCCACCACCACCGCCGCTGCCGCCGCCGCCGGATTTGCCAAGCACCG
GCGGGCTTGTCTGCGCGGCGGCTCCGCTGTCATCCACGCCACCAGCGGTG
AGGCCGACATCCTCGCTGCCGACATCCTCGCTGCCGACATCCTCGCTGCC
GACATCCTCGCCGACATCCTCGCTGCCGACATCCTCGCTGCCGACATCCT
CGCTGCCGACATCCTCGCTGCCGACATCCTCGCCTACACTTTCTTCGTCC
TCGATGTCGACCGTCATCGAGTGTCTCGAGCTGAACTGGACAGTGCCCTC
GTCCTCGGAGACCCAGCCGTCGTCTTCCTCGCCGTCGTCGGTCTCCTCCC
CGCCGTCGATGTCCTCTATCACCGCCGCGGTCGGCGTCGGCGGGAGCGCC
CGTGGACCGGCCGGAGAGATTATCCCCGCTGGGCCTCCCCGGCCAAGTCG
TGCTCCGGCCGAGAGAGGACGCTGTTCCTGCTCCGCGACAGCCCCACCAA
CGCCGCCGCCGCCGCCGTTCCAAGCACCGCGCTGGCGCAGCCCTGGCGTT
GTCTGGGAAGCGGTGGTGACGCCCGAAGCACCGGCACCCGCCGCCGCCGT
CGCAGCGCACACCGGGCAAGACCCGGCGGACCCGCCGCCGCCCCCACCGG
CCGCTTCCCGAGACAAGCCCCGTCGGTGGCCGGAAACAAGAGGCTTGAGC
CCGTCAGCGCTTCCCCTGTCACCACCACCGCCGCCGCCCTCCGGCCGGGA
CAACGAGACCGGCGGCGTCAAGGCGGAGGGCCCGGCATCGGCCACCGGAG
GAGACAGGACGTCCACCACCGCCCACATGGCGCGGGAGAATATCAACGCT
CCGAGGAG
back to top