mRNA_L-elsbetiae_contig612.14679.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig612.14679.1
Unique NamemRNA_L-elsbetiae_contig612.14679.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig612.14679.1 vs. uniprot
Match: D8LSA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA7_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 6.870e-86
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 MEAELD-SARVMENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKEDPVEASWGVHDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLVETDKNMSLSEYLRVYDTPIVATLESERVWPIPALIRY 405
            MEA+LD SARVMENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKEDPVEASWGV+DKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGL ET+KNMSLSEYL+VYDTPI ATLESERVWPIPALIRY
Sbjct:   51 MEADLDPSARVMENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKEDPVEASWGVYDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAETEKNMSLSEYLQVYDTPISATLESERVWPIPALIRY 186
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BLAST of mRNA_L-elsbetiae_contig612.14679.1 vs. uniprot
Match: A0A835YNJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.040e-43
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1 
Query:   43 KILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKEDPVEASWGVHDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLVETDKNMSLSEYLRVYDTPIVATLESERVWPIPALIRY 405
            ++L + EDCP PYFAKWFHY++QL  ++ VD+++EDPVEA+WGV D+L ELA+E+    G S S+LKR+Y HLV SNER   L   D  M + EYL +YDTPI A LE ERVWP   ++RY
Sbjct:   82 RLLAACEDCPCPYFAKWFHYHVQLMPDAGVDVEREDPVEAAWGVLDRLAELAAEVAAAGGASSSDLKRRYAHLVASNERCAALARADAFMPIGEYLDLYDTPIDAALEGERVWPAQQVVRY 202
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BLAST of mRNA_L-elsbetiae_contig612.14679.1 vs. uniprot
Match: A0A6A0A0Z6_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A0Z6_HAELA)

HSP 1 Score: 59.7 bits (143), Expect = 2.380e-8
Identity = 39/135 (28.89%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:   31 MENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVD-IDKEDPVEASWGVHDKLVELASEMRQHSGT----SVSELKRK------YNHLVPSNERVLGLVETDKNMSLSEYLRVYDTPIVATLESERVWPIPALIR 402
            +   +++ S+ED P   F  W  +   +N  +N D ID  D    S  +     EL + MR+  G+    + SELKR+      Y   +P+ E ++ LV  +   ++ E+L ++D P+   L+SE+VWP+P++++
Sbjct:   49 LAEARVVASTEDIPMRCFGAW--HAAFINTATNTDNIDAAD----STTIVKSASELNASMRKLGGSLTDLTESELKRRLAAMDQYCEDLPAPELLMSLVPAEDAPTVEEFLDIFDAPVTVELDSEKVWPMPSMLK 177
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BLAST of mRNA_L-elsbetiae_contig612.14679.1 vs. uniprot
Match: A0A7S3AYT3_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYT3_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 5.200e-8
Identity = 33/132 (25.00%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:   16 DSARVMENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKEDPVEASWGVHDKLVELASEMRQHSGTSVSELKRKYNHL--VPSNERVLGLVETDKNMSLSEYLRVYDTPIVATLESERVWPIPALIRY 405
            D+  + E ++++ ++ED    +F+ W    +        ++D ++           +++L + + +     +S+L R   H   +PSNERV+ LV+ ++  SL ++L ++D P+  T+ES+RVWP    + Y
Sbjct:   82 DALGLFECIRVIHAAEDVAQRHFSSWKVKEVSAARNDYAELDSKNLPGLLGETVIGMLKLGAGLGKMGSGDMSKLDRWKEHFPDMPSNERVVQLVDVEEVPSLVDFLTIFDAPVDLTMESDRVWPPERAMVY 213
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BLAST of mRNA_L-elsbetiae_contig612.14679.1 vs. uniprot
Match: A0A699YTT2_HAELA (Uncharacterized protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YTT2_HAELA)

HSP 1 Score: 51.2 bits (121), Expect = 6.480e-5
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  190 ELASEMRQHSGT----SVSELKRK------YNHLVPSNERVLGLVETDKNMSLSEYLRVYDTPIVATLESERVWPIPALIR 402
            EL + MR+  GT    + SELKR+      Y   +P+ E ++ LV  +   ++ E+L ++D P+   L+SE+VWP+P++++
Sbjct:  178 ELNASMRKLGGTLTDLTESELKRRLAAMDQYCEDLPAPELLMSLVPAEDAPTVEEFLDIFDAPVTVELDSEKVWPMPSMLK 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig612.14679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSA7_ECTSI6.870e-8694.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNJ4_9STRA1.040e-4356.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A0A0Z6_HAELA2.380e-828.89Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A7S3AYT3_9EUKA5.200e-825.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A699YTT2_HAELA6.480e-533.33Uncharacterized protein (Fragment) n=1 Tax=Haemato... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig612contigL-elsbetiae_contig612:17830..19573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog36331.EPrPI00000024159
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MEU1@121069,2BYZI@1,2S2IG@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004220.1
Exons4
Model size408
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig612.14679.1prot_L-elsbetiae_contig612.14679.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig612 17830..19573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.7760763-CDS-L-elsbetiae_contig612:17829..178681622816669.7760763-CDS-L-elsbetiae_contig612:17829..17868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 17830..17868 +
1691683727.273483-CDS-L-elsbetiae_contig612:17829..178681691683727.273483-CDS-L-elsbetiae_contig612:17829..17868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 17830..17868 +
1622816669.7880225-CDS-L-elsbetiae_contig612:18300..184401622816669.7880225-CDS-L-elsbetiae_contig612:18300..18440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 18301..18440 +
1691683727.2846434-CDS-L-elsbetiae_contig612:18300..184401691683727.2846434-CDS-L-elsbetiae_contig612:18300..18440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 18301..18440 +
1622816669.800363-CDS-L-elsbetiae_contig612:18856..190011622816669.800363-CDS-L-elsbetiae_contig612:18856..19001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 18857..19001 +
1691683727.2964325-CDS-L-elsbetiae_contig612:18856..190011691683727.2964325-CDS-L-elsbetiae_contig612:18856..19001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 18857..19001 +
1622816669.810957-CDS-L-elsbetiae_contig612:19489..195731622816669.810957-CDS-L-elsbetiae_contig612:19489..19573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 19490..19573 +
1691683727.3070788-CDS-L-elsbetiae_contig612:19489..195731691683727.3070788-CDS-L-elsbetiae_contig612:19489..19573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 19490..19573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig612.14679.1

>prot_L-elsbetiae_contig612.14679.1 ID=prot_L-elsbetiae_contig612.14679.1|Name=mRNA_L-elsbetiae_contig612.14679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MEAELDSARVMENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKED
PVEASWGVHDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLVET
DKNMSLSEYLRVYDTPIVATLESERVWPIPALIRY*
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mRNA from alignment at L-elsbetiae_contig612:17830..19573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig612.14679.1 ID=mRNA_L-elsbetiae_contig612.14679.1|Name=mRNA_L-elsbetiae_contig612.14679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1744bp|location=Sequence derived from alignment at L-elsbetiae_contig612:17830..19573+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCCGAGCTAGATTCGGCAAGGGTAATGGAAAACGTGAGTTGTAG
GATATGAAGTGCAAGGAAAGCTACTCGACTCAAACACTTAGAGCCGTTCT
GCCGCGTCCTCCATGCAATAGCGAAAATGAAAACCACAACGAGTTTGGTG
GTCCTACCGTTCTCGTCGCCCGGCGGTATTATCTACATATAGTTGAAACG
CTGCGGTCTGAAGGCGCTCAAACGAGTGTTCGGATATTGCGTTCTCACGT
GAGAATCCCCTCTCACCGTACCAAAACATGACCGCACCGTGCTATGTACA
CGTAAAAAGTGCAGAGAAGGGAGAGGAAGAGCTAGGGAGGAAGACCGAGC
GGATCCTATACTTTGACATTTCAGCTTACCACGTATATTCGAACTCCCCT
TTCTCCAAACTTCCTGTCTATTGGTTGCTTTCTCATCCCGCCTGGTTGGA
TCGATGGATCAATAATAACAGGTGAAGATTCTGGTATCGAGCGAGGACTG
CCCCGCCCCTTACTTCGCAAAGTGGTTTCACTACAACATCCAGCTCAACG
CAGAGAGCAATGTGGACATCGACAAAGAAGATCCCGTCGAAGCTTCCTGG
GGGGTTCACGAGTGAGTTCGGCCTACAGCTGCCAACTGCAGTTTGAGTTA
GAACTGGCGCTAGTAAACATCATAACATGCTTTAAATAGGAATACATAGT
TTCGAATGAGGCCGCCCCTTCACGATCCACAAAACAAAAAGTGCACTAAC
AATTGGAGTACGCCAAGCACAGCAATAAACAACCCGGTAACAGCAACAAG
TACCTACCAGGTTTCCTACCGTTCCATCAAATCCCCCGTGCCGAGAGGGC
CAGCAACCAATATTGCCAAACGAAAGGATGTGTACGTGGCCACCTGCGGA
CAAGCCGAGCCCCCAGCCCAATATAATGTTCACGTAGCAACAGGTTCAGC
GAATACCTCCCCCACGTATATTGTTTCCGTTTCGATTGATGCTGCTGTTG
CTGTCCTTTTTCATCAAATGTCAACAGCAAGCTGGTGGAGCTCGCTTCTG
AGATGAGACAGCACTCGGGAACGTCGGTGTCGGAGCTGAAGCGCAAGTAC
AACCACCTGGTGCCCTCCAACGAACGCGTGCTGGGGCTGGTGGAAACCGA
CAAAAATATGAGCCTGTCGGAGGTGAGATAAGGCGAACGAGAGAGAGAGG
AAGAGAGGGAGAGAGGGGGGAGAGAGAGAGAGATACAGAGGTGGAGAGGC
AGGGGGGGCGAGGCAAGCATGGAAGAGGGCGGGGAATTCTTCATCGGGGT
CTCCCCGGAAGTACGCCAGGCATCAGTTAGTTTGATTTGTTCTGCTGGGG
AAGCCTCACAATCGCACATTCTCCCTTTTTTTCGCGTGCATGCATGAGGT
GCAAGGGAACCGAATGCTGCGCATGGTATCGCAACACACAACGACAAAGG
CACGTAAGCGCCTTCTTTTTTCACTAACTCTCGTTCCTAAGGATACCAAT
TTCAGAGATCCTCGCCCGTGTGTACCGGGAAGAAAGCAATACTTTTACCC
CCCCAGTGCCTTCCACAGTCCGATCACCTATTTGTGTTCCTTTGCCTGTC
TCACTGCTTCCCCGTCCTGCTTGCTCCTTCCCCTCTCGTTTCCCGTGTCG
ACGACCTCAGTACTTGCGAGTGTATGACACGCCCATCGTGGCCACCCTGG
AGTCGGAGCGGGTGTGGCCGATCCCGGCCTTGATACGCTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig612:17830..19573+

>mRNA_L-elsbetiae_contig612.14679.1 ID=mRNA_L-elsbetiae_contig612.14679.1|Name=mRNA_L-elsbetiae_contig612.14679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig612:17830..19573+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCCGAGCTAGATTCGGCAAGGGTAATGGAAAACATGGAGGCCGA
GCTAGATTCGGCAAGGGTAATGGAAAACGTGAAGATTCTGGTATCGAGCG
AGGACTGCCCCGCCCCTTACTTCGCAAAGTGGTTTCACTACAACATCCAG
CTCAACGCAGAGAGCAATGTGGACATCGACAAAGAAGATCCCGTCGAAGC
TTCCTGGGGGGTTCACGAGTGAAGATTCTGGTATCGAGCGAGGACTGCCC
CGCCCCTTACTTCGCAAAGTGGTTTCACTACAACATCCAGCTCAACGCAG
AGAGCAATGTGGACATCGACAAAGAAGATCCCGTCGAAGCTTCCTGGGGG
GTTCACGACAAGCTGGTGGAGCTCGCTTCTGAGATGAGACAGCACTCGGG
AACGTCGGTGTCGGAGCTGAAGCGCAAGTACAACCACCTGGTGCCCTCCA
ACGAACGCGTGCTGGGGCTGGTGGAAACCGACAAAAATATGAGCCTGTCG
GAGCAAGCTGGTGGAGCTCGCTTCTGAGATGAGACAGCACTCGGGAACGT
CGGTGTCGGAGCTGAAGCGCAAGTACAACCACCTGGTGCCCTCCAACGAA
CGCGTGCTGGGGCTGGTGGAAACCGACAAAAATATGAGCCTGTCGGAGTA
CTTGCGAGTGTATGACACGCCCATCGTGGCCACCCTGGAGTCGGAGCGGG
TGTGGCCGATCCCGGCCTTGATACGCTACTGATACTTGCGAGTGTATGAC
ACGCCCATCGTGGCCACCCTGGAGTCGGAGCGGGTGTGGCCGATCCCGGC
CTTGATACGCTACTGA
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