mRNA_L-elsbetiae_contig6116.14673.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6116.14673.1
Unique NamemRNA_L-elsbetiae_contig6116.14673.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6116.14673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6116contigL-elsbetiae_contig6116:3066..6651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size166
Cds size144
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6116.14673.1prot_L-elsbetiae_contig6116.14673.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6116 3066..6630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.2424614-CDS-L-elsbetiae_contig6116:3065..31471622816669.2424614-CDS-L-elsbetiae_contig6116:3065..3147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6116 3066..3147 +
1691683726.8977542-CDS-L-elsbetiae_contig6116:3065..31471691683726.8977542-CDS-L-elsbetiae_contig6116:3065..3147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6116 3066..3147 +
1622816669.2563293-CDS-L-elsbetiae_contig6116:6568..66301622816669.2563293-CDS-L-elsbetiae_contig6116:6568..6630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6116 6569..6630 +
1691683726.9068148-CDS-L-elsbetiae_contig6116:6568..66301691683726.9068148-CDS-L-elsbetiae_contig6116:6568..6630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6116 6569..6630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.2667766-UTR-L-elsbetiae_contig6116:6630..66511622816669.2667766-UTR-L-elsbetiae_contig6116:6630..6651Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6116 6631..6651 +
1691683726.915721-UTR-L-elsbetiae_contig6116:6630..66511691683726.915721-UTR-L-elsbetiae_contig6116:6630..6651Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6116 6631..6651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6116.14673.1

>prot_L-elsbetiae_contig6116.14673.1 ID=prot_L-elsbetiae_contig6116.14673.1|Name=mRNA_L-elsbetiae_contig6116.14673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
GRGRVQGFLFVVLLSSHWPTLPIAAQCGSSRPPATRPGQGRHDGAPA*
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mRNA from alignment at L-elsbetiae_contig6116:3066..6651+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6116.14673.1 ID=mRNA_L-elsbetiae_contig6116.14673.1|Name=mRNA_L-elsbetiae_contig6116.14673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3586bp|location=Sequence derived from alignment at L-elsbetiae_contig6116:3066..6651+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGAGGAAGGGTACAGGGGTTCCTCTTCGTGGTCTTGTTATCGTCTCA
TTGGCCAACCTTGCCAATAGCTGCACAGTGTGGTGAGTGAGGTACAGAAC
ACCGAGTGTACCTTCACAAGTTATGGACACGCCGCAGCTTCAATTGCTCC
GCGTTGGTCTTTGATGCTCGTTGCTCGTTCTGCTTGTCTGCGGGGCTTCC
GCACATGATGCTTTCTCCACCGAGGTTTGTGGATGGAGCCAGAAGTCTGT
TGACCCTTTAACTACAGCGGGCTGGTGATTCCAGACCAGCGTACAATGTC
AGGAAGTGCGACTTTTTACATACACACCAGCCGACGTTTTCAATCTCCGT
TTTGCACTCGCCACCTTCGAAGGTAAACGTGGGTCTCCCTCTCAAAATCA
TGACACACAGCACCGTCGTAATTTGCTGCCGACAAAAAAATGGTTCGTCC
CCAGCCAGCGAGCTTGCCCCCCGCCATATATATATACAAGGTCTTGGGCG
CTTGGCGCGCTCCCGCTGATTGCAAGCGAGTCCAAGGTATTGTAGAGTGT
AATATAATTGAGCAGGACGGACGTGTGAGTGAGTGAGTGGTGGAGTTGAT
GAGTTGGAGGATGTTTACATGTTCCATTTAGAAGTAAATATTTAAATTTC
GAGTGCAAACTGTGTATCTACATACATACATCCTTGCAGGCCAGTTGAGC
TTGATAGAGAGTTTCATCGAGAGAAAGGAATAGAGAGGGCGAGCCAGAGC
TTCCCTACTTGCATTTTTTTGACGGCGTGCCACGAGTGTGCCGCATGCCT
TGCAGGACGGGACACATGCCCAGCTCGCACATTGACCCCTTCGGCGTGCT
TCACCAGTCAGTTGGCCGACGAAAGCAAGCGGAGTTTAAAACGAGAGTCA
AATTTTCAAAAAGAGAGAGAGGAGAGGATGTGTGTGTGTAGTAGTGATGG
GGGTGGAGAGTGTGCAGCAGTAGGGGGTGGTCAGAGAGAGAAGAAGTCAA
TTATATGGCTGTCGAGGAGGAGAGAGAGAGAGACAACGGGACGGAATATT
CTCCACGAAAATCCCAATTTCCAGAGGCATTGTCCGATATCGGAACAAAC
GAATAGTTCAAAAGCCACGAGAGGATAATGCATAACACCCGCAACATCGA
CAGAGAGAGAAGGGTTTGAACCACAGCAGTATAGAGCAGCTCTAGCAACG
AGTAGGACACACGCGAGGGAGACCTCGGGGAGAGAGAGAGGGAGAGAGAG
AGAGACAGAGAAAATGTATTCGGAACCAAAGTGTTTGAACGAGGACGAGG
TACTCTCCACAAAAATTCCAATCTCCAGAGGACGAATAGTTCAAGAGGCG
CGAGAGGATGCATAATGCATAACATCTTCAACATCGACAGAGAGAGAAGG
GTTTACACCACAGTATAGAGCAGCTCTAGGAACGAGTAGGACACACGCGA
GGGAGACCTCGGGGGGAAAGAGAGAGAGAGAGAGAGAGCGGATGAAGGGT
GGAGACCACAGTTCCCAGAATTCCGGCCAGAGAACAAAATATTCGCATTA
CAGGAATGACAACGGATCGATTCTGGCGGCAAAACAAATCATAAGAAGTC
TGTAAGTACATAGATAGACAAATTGGTCTGGGAGAACTTCTGTTGCGATA
TCTCAAGTAGGCTGTCGGTAGGCTGTCGGCCTCGAATGGCCAACGAACGT
CAGGATGACAGCAGCTGTCTCTTTCAGTTGGAGAAAAACACGTCAGTAGC
AGCTGTCTTTTTTCGGTGGAACAGAAAACACACGCTGAGGGGCACAGACC
TGCACAGCTGTGTTGACCTGCATAGCTGTGTTGACAAAGGCGGAGCGTGT
TGATCAAGGGCGGAGCGCCCACACAGAAGCACCCGGTTAGTGCTGTTGTT
GTGCTTAGGAGGGCAGCTGTTTCGTCTGATCTATATCGTGTCGATTAATT
GAGGACGGGACCTGCTTTTTGCGGGAAAAGAGGCGTTTGAGTTAATAATA
TTTGGTTCAAACATCTGAGTTATTCTTTTTTCTTTCGTCTTGCATCACCC
CCGTCCCCTGTGCTCTCATGAGCTCGCTCCGAAGGGTGATCTTGTACACG
TCTATATATTTATTTTTTCCCTCCAATTATTGGCATATGTACATAGGAGG
GAGTCCAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTATGGCTAGA
GTAGAAGTGGAGGATGGGGGCCAGAGGGGCAGACGACAAAATCCAATAAT
GGGCAGATAAAAAATAAATAAATATATACTGAAGTATATATATATATGAA
CCTTGTCAATTTTGTGGTTCTGCCGTGTTTTCTCCCTCGGTACATCGCTT
TTTCTCATGTGTTCTTTTCCACGACTAGTGTCAGTGAGACCGTCGGTACA
TTACCCGTGACCTGCGGATCTCGCCAGACATCGGTGGCTCGCGTGGTCGC
CGCCTAAAACTCGCTCGCACTGGCTCTATAGGAAAAGTACGATTTCCGAA
CCACAAAAGCCTCCTCCAAATGGAAACTGAGAACCAGAACAGTTAATTAG
CGGGGTGTTGTTATGTGGAAGCACTGCTTTATAACCGTAGCATGTGCGTG
CGCAAAAACATTAAAGAGTATTCTGATCAGCGGACACAGCAGCATCAGCA
CTGTAGTATGTAGCGATAATTCAGCCGTTGCACGCTACAAGAAGAGCACT
CGCGACTCCGCGTCTTCACGCAACACACGGCGGGGCATGAGACATTTCTC
GCCGAGATTTCGGTAGGTGCGGACAATCAATCGTGCATTCACCCGAATCC
GGGCATTCTGAACTAAACAACTGCGGTTTGAGAGGCCTATATTATTTGGC
TCTACATAGTAAACCGACACCACTTACAATATATAGCAGCCCATCCATCA
ACAGCGGCACTAACATAACATGTAGTTGCAAGTTTCAACAGACTATCTAA
CGTGTCCAAGATTTTCAAAAATGTACTCCAAATCCATTGCGGTCTCTACA
TGTATTTGGGTGATGTGTCCATATTTTGTGTGTGTGCACGCGCGCGGTGA
GGGCCTGTCTTATCGAGGAGCGGAAAATCTGTTTTCAAAAATCAAAAATC
AAAATCCAAAACAGATTTCCCGGAAAATCTGTGTTTGCGTCTTAACGGGC
AGGTACGGAAATATCATTTTTTTCAAAATTATCACCACGTGCCTGGGTAC
AAGTATTAGCTGGACCGCGTGCCCCCCTGACCGACTACTATTGTCAGTGT
CTGGCATGCGTGCTCCTCGGGCGACAAGGGCCCAACGCGCCCACAGGCTG
CTGACAATTACTAAGAGGGTGTCGAGGCTGTTGGAAGTTCTGTCCGTTTT
GGACAATCTCGACGCTCTGTATGCTCCGTCGCCGAAGAAGACGCGCAGCA
CGCTGGTTTCGCGACAGAGGCGACCTTTCGCGACATACATCAGGCCAATG
CTGCAAGATACCACGTTCTCAATGCGCTTCTGTATGGACTACGACGACTT
TAGGTTCTAGTAGACCGCCTGCGACCCGCCCTGGCCAAGGACGACACGAT
GGGGCTCCTGCGTAATGGAGCGATCCCTGTGGAGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6116:3066..6651+

>mRNA_L-elsbetiae_contig6116.14673.1 ID=mRNA_L-elsbetiae_contig6116.14673.1|Name=mRNA_L-elsbetiae_contig6116.14673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig6116:3066..6651+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGAGGAAGGGTACAGGGGTTCCTCTTCGTGGTCTTGTTATCGTCTCA
TTGGCCAACCTTGCCAATAGCTGCACAGTGTGGGGCGAGGAAGGGTACAG
GGGTTCCTCTTCGTGGTCTTGTTATCGTCTCATTGGCCAACCTTGCCAAT
AGCTGCACAGTGTGGTTCTAGTAGACCGCCTGCGACCCGCCCTGGCCAAG
GACGACACGATGGGGCTCCTGCGTAAGTTCTAGTAGACCGCCTGCGACCC
GCCCTGGCCAAGGACGACACGATGGGGCTCCTGCGTAA
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