mRNA_L-elsbetiae_contig6104.14655.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6104.14655.1
Unique NamemRNA_L-elsbetiae_contig6104.14655.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6104.14655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6104contigL-elsbetiae_contig6104:8539..8930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.6515207-CDS-L-elsbetiae_contig6104:8538..89251622816667.6515207-CDS-L-elsbetiae_contig6104:8538..8925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6104 8539..8925 +
1691683725.7709281-CDS-L-elsbetiae_contig6104:8538..89251691683725.7709281-CDS-L-elsbetiae_contig6104:8538..8925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6104 8539..8925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.6668727-UTR-L-elsbetiae_contig6104:8925..89301622816667.6668727-UTR-L-elsbetiae_contig6104:8925..8930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6104 8926..8930 +
1691683725.783111-UTR-L-elsbetiae_contig6104:8925..89301691683725.783111-UTR-L-elsbetiae_contig6104:8925..8930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6104 8926..8930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6104.14655.1prot_L-elsbetiae_contig6104.14655.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6104 8539..8925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6104.14655.1

>prot_L-elsbetiae_contig6104.14655.1 ID=prot_L-elsbetiae_contig6104.14655.1|Name=mRNA_L-elsbetiae_contig6104.14655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
WLLARQVGFYKKKHPFCDVASRSASIIHAGRPTVAHAAEHGRCNEQKALS
IALSDCEPSKKTSTWRAQQLGRSRFAKVFSALHPNEEQHCDCYSPAKYLL
LHGAVKPSCLRITTHRHRSQLLLSRPAI*
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mRNA from alignment at L-elsbetiae_contig6104:8539..8930+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6104.14655.1 ID=mRNA_L-elsbetiae_contig6104.14655.1|Name=mRNA_L-elsbetiae_contig6104.14655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=392bp|location=Sequence derived from alignment at L-elsbetiae_contig6104:8539..8930+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTTGCTGGCTAGGCAAGTCGGGTTCTACAAAAAAAAACACCCATTTTG
CGACGTAGCATCGCGTTCAGCGTCGATAATTCACGCAGGACGCCCAACGG
TGGCCCACGCCGCAGAACATGGTCGTTGCAATGAACAGAAGGCTCTTTCC
ATAGCGCTGTCAGATTGTGAACCGTCCAAAAAAACGTCAACTTGGCGTGC
GCAACAGCTCGGAAGATCACGCTTTGCCAAGGTTTTCTCCGCGCTGCACC
CAAACGAGGAGCAACACTGCGATTGCTATTCACCCGCCAAGTATCTGCTA
CTGCATGGTGCAGTCAAACCTTCGTGCTTGAGGATCACTACGCACCGCCA
CCGCTCCCAACTACTTCTTAGTCGACCTGCTATTTGAAGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6104:8539..8930+

>mRNA_L-elsbetiae_contig6104.14655.1 ID=mRNA_L-elsbetiae_contig6104.14655.1|Name=mRNA_L-elsbetiae_contig6104.14655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig6104:8539..8930+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTTGCTGGCTAGGCAAGTCGGGTTCTACAAAAAAAAACACCCATTTTG
CGACGTAGCATCGCGTTCAGCGTCGATAATTCACGCAGGACGCCCAACGG
TGGCCCACGCCGCAGAACATGGTCGTTGCAATGAACAGAAGGCTCTTTCC
ATAGCGCTGTCAGATTGTGAACCGTCCAAAAAAACGTCAACTTGGCGTGC
GCAACAGCTCGGAAGATCACGCTTTGCCAAGGTTTTCTCCGCGCTGCACC
CAAACGAGGAGCAACACTGCGATTGCTATTCACCCGCCAAGTATCTGCTA
CTGCATGGTGCAGTCAAACCTTCGTGCTTGAGGATCACTACGCACCGCCA
CCGCTCCCAACTACTTCTTAGTCGACCTGCTATTTGATGGTTGCTGGCTA
GGCAAGTCGGGTTCTACAAAAAAAAACACCCATTTTGCGACGTAGCATCG
CGTTCAGCGTCGATAATTCACGCAGGACGCCCAACGGTGGCCCACGCCGC
AGAACATGGTCGTTGCAATGAACAGAAGGCTCTTTCCATAGCGCTGTCAG
ATTGTGAACCGTCCAAAAAAACGTCAACTTGGCGTGCGCAACAGCTCGGA
AGATCACGCTTTGCCAAGGTTTTCTCCGCGCTGCACCCAAACGAGGAGCA
ACACTGCGATTGCTATTCACCCGCCAAGTATCTGCTACTGCATGGTGCAG
TCAAACCTTCGTGCTTGAGGATCACTACGCACCGCCACCGCTCCCAACTA
CTTCTTAGTCGACCTGCTATTTGA
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