mRNA_L-elsbetiae_contig6102.14651.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6102.14651.1
Unique NamemRNA_L-elsbetiae_contig6102.14651.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6102.14651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6102contigL-elsbetiae_contig6102:4132..4454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.5470753-UTR-L-elsbetiae_contig6102:4131..41481622816667.5470753-UTR-L-elsbetiae_contig6102:4131..4148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6102 4132..4148 +
1691683725.7141044-UTR-L-elsbetiae_contig6102:4131..41481691683725.7141044-UTR-L-elsbetiae_contig6102:4131..4148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6102 4132..4148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.5623817-CDS-L-elsbetiae_contig6102:4148..44541622816667.5623817-CDS-L-elsbetiae_contig6102:4148..4454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6102 4149..4454 +
1691683725.725415-CDS-L-elsbetiae_contig6102:4148..44541691683725.725415-CDS-L-elsbetiae_contig6102:4148..4454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6102 4149..4454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6102.14651.1prot_L-elsbetiae_contig6102.14651.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6102 4149..4454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6102.14651.1

>prot_L-elsbetiae_contig6102.14651.1 ID=prot_L-elsbetiae_contig6102.14651.1|Name=mRNA_L-elsbetiae_contig6102.14651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MARLLFCAPQSRPRGSDGVPHGRRGRASPASLLAAWRECHVGTTRGRATP
GCECTTHAFPKDRSLRTRTRDRCRPQAMVVLEVSCNGNRPSGTLCDLILR
D*
back to top

mRNA from alignment at L-elsbetiae_contig6102:4132..4454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6102.14651.1 ID=mRNA_L-elsbetiae_contig6102.14651.1|Name=mRNA_L-elsbetiae_contig6102.14651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=323bp|location=Sequence derived from alignment at L-elsbetiae_contig6102:4132..4454+ (Laminarionema elsbetiae ELsaHSoW15)
CCAAGGTGTTTCTCGGGATGGCGCGGCTTCTTTTTTGTGCCCCCCAATCG
CGACCCCGTGGCTCTGATGGAGTACCTCACGGGCGGAGGGGGCGAGCTTC
CCCTGCTTCCCTGCTCGCAGCATGGAGAGAGTGCCACGTGGGGACAACAA
GGGGACGTGCCACCCCAGGTTGCGAATGTACCACACATGCCTTTCCAAAA
GATCGATCTCTCCGCACAAGAACGAGAGATCGATGCCGCCCACAAGCGAT
GGTGGTGCTAGAAGTATCATGTAATGGGAATCGGCCCAGCGGCACGTTGT
GCGATCTAATCCTACGGGACTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6102:4132..4454+

>mRNA_L-elsbetiae_contig6102.14651.1 ID=mRNA_L-elsbetiae_contig6102.14651.1|Name=mRNA_L-elsbetiae_contig6102.14651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6102:4132..4454+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGGCTTCTTTTTTGTGCCCCCCAATCGCGACCCCGTGGCTCTGA
TGGAGTACCTCACGGGCGGAGGGGGCGAGCTTCCCCTGCTTCCCTGCTCG
CAGCATGGAGAGAGTGCCACGTGGGGACAACAAGGGGACGTGCCACCCCA
GGTTGCGAATGTACCACACATGCCTTTCCAAAAGATCGATCTCTCCGCAC
AAGAACGAGAGATCGATGCCGCCCACAAGCGATGGTGGTGCTAGAAGTAT
CATGTAATGGGAATCGGCCCAGCGGCACGTTGTGCGATCTAATCCTACGG
GACTGAATGGCGCGGCTTCTTTTTTGTGCCCCCCAATCGCGACCCCGTGG
CTCTGATGGAGTACCTCACGGGCGGAGGGGGCGAGCTTCCCCTGCTTCCC
TGCTCGCAGCATGGAGAGAGTGCCACGTGGGGACAACAAGGGGACGTGCC
ACCCCAGGTTGCGAATGTACCACACATGCCTTTCCAAAAGATCGATCTCT
CCGCACAAGAACGAGAGATCGATGCCGCCCACAAGCGATGGTGGTGCTAG
AAGTATCATGTAATGGGAATCGGCCCAGCGGCACGTTGTGCGATCTAATC
CTACGGGACTGA
back to top