mRNA_L-elsbetiae_contig61.14640.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig61.14640.1
Unique NamemRNA_L-elsbetiae_contig61.14640.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig61.14640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig61contigL-elsbetiae_contig61:6237..7107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size871
Cds size516
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.6120353-UTR-L-elsbetiae_contig61:6236..65911622816665.6120353-UTR-L-elsbetiae_contig61:6236..6591Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig61 6237..6591 +
1691683724.1896932-UTR-L-elsbetiae_contig61:6236..65911691683724.1896932-UTR-L-elsbetiae_contig61:6236..6591Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig61 6237..6591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.6259537-CDS-L-elsbetiae_contig61:6591..71071622816665.6259537-CDS-L-elsbetiae_contig61:6591..7107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig61 6592..7107 +
1691683724.2004247-CDS-L-elsbetiae_contig61:6591..71071691683724.2004247-CDS-L-elsbetiae_contig61:6591..7107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig61 6592..7107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig61.14640.1prot_L-elsbetiae_contig61.14640.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig61 6592..7107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig61.14640.1

>prot_L-elsbetiae_contig61.14640.1 ID=prot_L-elsbetiae_contig61.14640.1|Name=mRNA_L-elsbetiae_contig61.14640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MLAQRAHGVDHGGRLVFSAELGLFPAVVGAVDRDLGATAPIMLAQRAYDV
DHGGRFVCSPQNWAPLLAIVGPEARVPGAVFFLADLVLHIHHAGPLVFTA
ELTPLLAIVGTVDRAWPWCRFRFSLRRSCFSYFFMTSILCSLQNQPLQYY
WDQHKLLFSCNDRRRLSRFRGT
back to top

mRNA from alignment at L-elsbetiae_contig61:6237..7107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig61.14640.1 ID=mRNA_L-elsbetiae_contig61.14640.1|Name=mRNA_L-elsbetiae_contig61.14640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=871bp|location=Sequence derived from alignment at L-elsbetiae_contig61:6237..7107+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGTTTCGTCCGCTGGCGCCATATAGCTTGCAGCTCCTTCTCCAAAGC
AATAAAATCATCCGTCAGAGTCTTCAAGAAGTCCATCCTTTCTAGGTAAC
CCGATACCATTGTAAACGGTTCGGCATCCTTTCCAAGTATCTCCCGCAGG
GTGCTGACCAAGGCCTTCTTCACGTCGATAGGTGTTTCCAAACTAACATC
GAAGCGATTACACGAGACCGCGCGCATTTGGTGCTTCTCTATCAGATCCG
GACCCATCCCCTCCCATTGCCGCCGGGTGTGCATACGGGGCGTCTTGTGT
TCAGCGCAGAACTGGGGCTCTCTCCTGCCGTCGTTGGGGCCAACCGCCCC
CCATCATGCTGGCACAGCGGGCGCACGGCGTTGACCATGGCGGGCGTCTT
GTGTTCAGCGCCGAACTGGGGCTCTTTCCTGCCGTCGTTGGCGCCGTAGA
TCGCGACCTCGGTGCAACCGCCCCCATCATGCTGGCACAGCGGGCTTACG
ACGTCGACCATGGCGGGCGCTTTGTGTGTTCACCCCAGAACTGGGCGCCT
CTTCTCGCCATCGTTGGCCCCGAAGCTCGCGTCCCTGGTGCAGTTTTTTT
CCTCGCAGATCTTGTACTTCATATTCACCATGCCGGGCCTCTTGTTTTCA
CGGCAGAACTGACGCCTCTTCTCGCCATCGTTGGCACCGTAGATCGCGCG
TGGCCTTGGTGCAGGTTTAGGTTTTCTCTTCGCCGGTCTTGTTTTTCATA
TTTTTTCATGACGAGTATCTTGTGTTCACTGCAAAATCAACCCCTGCAAT
ATTACTGGGATCAGCATAAATTGCTGTTTTCTTGCAACGATCGCCGTCGG
CTGTCACGTTTCCGAGGCACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig61:6237..7107+

>mRNA_L-elsbetiae_contig61.14640.1 ID=mRNA_L-elsbetiae_contig61.14640.1|Name=mRNA_L-elsbetiae_contig61.14640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig61:6237..7107+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGCACAGCGGGCGCACGGCGTTGACCATGGCGGGCGTCTTGTGTT
CAGCGCCGAACTGGGGCTCTTTCCTGCCGTCGTTGGCGCCGTAGATCGCG
ACCTCGGTGCAACCGCCCCCATCATGCTGGCACAGCGGGCTTACGACGTC
GACCATGGCGGGCGCTTTGTGTGTTCACCCCAGAACTGGGCGCCTCTTCT
CGCCATCGTTGGCCCCGAAGCTCGCGTCCCTGGTGCAGTTTTTTTCCTCG
CAGATCTTGTACTTCATATTCACCATGCCGGGCCTCTTGTTTTCACGGCA
GAACTGACGCCTCTTCTCGCCATCGTTGGCACCGTAGATCGCGCGTGGCC
TTGGTGCAGGTTTAGGTTTTCTCTTCGCCGGTCTTGTTTTTCATATTTTT
TCATGACGAGTATCTTGTGTTCACTGCAAAATCAACCCCTGCAATATTAC
TGGGATCAGCATAAATTGCTGTTTTCTTGCAACGATCGCCGTCGGCTGTC
ACGTTTCCGAGGCACCATGCTGGCACAGCGGGCGCACGGCGTTGACCATG
GCGGGCGTCTTGTGTTCAGCGCCGAACTGGGGCTCTTTCCTGCCGTCGTT
GGCGCCGTAGATCGCGACCTCGGTGCAACCGCCCCCATCATGCTGGCACA
GCGGGCTTACGACGTCGACCATGGCGGGCGCTTTGTGTGTTCACCCCAGA
ACTGGGCGCCTCTTCTCGCCATCGTTGGCCCCGAAGCTCGCGTCCCTGGT
GCAGTTTTTTTCCTCGCAGATCTTGTACTTCATATTCACCATGCCGGGCC
TCTTGTTTTCACGGCAGAACTGACGCCTCTTCTCGCCATCGTTGGCACCG
TAGATCGCGCGTGGCCTTGGTGCAGGTTTAGGTTTTCTCTTCGCCGGTCT
TGTTTTTCATATTTTTTCATGACGAGTATCTTGTGTTCACTGCAAAATCA
ACCCCTGCAATATTACTGGGATCAGCATAAATTGCTGTTTTCTTGCAACG
ATCGCCGTCGGCTGTCACGTTTCCGAGGCACC
back to top