mRNA_L-elsbetiae_contig6099.14637.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6099.14637.1
Unique NamemRNA_L-elsbetiae_contig6099.14637.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6099.14637.1 vs. uniprot
Match: A0A6H5LCV9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCV9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.510e-10
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:  133 KRQGGELVDTSNSSSDFSGPQRVRVSNSIIPPDLSLSFW--PPATPDSKTS--RLKSKTVSR 306
            KRQG E+ D SNSS DF+GPQRVR++++ +P D+SLSFW  P +TPDSK+   RL SKTV++
Sbjct:   94 KRQGEEIADVSNSSGDFTGPQRVRINSNSVPADISLSFWSLPASTPDSKSGGGRLTSKTVTK 155
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6099.14637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCV9_9PHAE1.510e-1059.68Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6099contigL-elsbetiae_contig6099:1651..2246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.4255815-CDS-L-elsbetiae_contig6099:1650..22441622816665.4255815-CDS-L-elsbetiae_contig6099:1650..2244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6099 1651..2244 +
1691683724.0742579-CDS-L-elsbetiae_contig6099:1650..22441691683724.0742579-CDS-L-elsbetiae_contig6099:1650..2244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6099 1651..2244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6099.14637.1prot_L-elsbetiae_contig6099.14637.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6099 1651..2244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6099.14637.1

>prot_L-elsbetiae_contig6099.14637.1 ID=prot_L-elsbetiae_contig6099.14637.1|Name=mRNA_L-elsbetiae_contig6099.14637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
AAAASGTGRGGRGSGLSLRSDGNGGAPPSALRASTAAATAFCSSKRQGGE
LVDTSNSSSDFSGPQRVRVSNSIIPPDLSLSFWPPATPDSKTSRLKSKTV
SRAARTTTATAAVTPLHHHSQAEAAPREPSTVARDTIASSSRKNAAQSQS
AVTTRKRARPAAVPAAAQATAATAAEAQQQVGKGISHGGGKIPSTGVG
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mRNA from alignment at L-elsbetiae_contig6099:1651..2246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6099.14637.1 ID=mRNA_L-elsbetiae_contig6099.14637.1|Name=mRNA_L-elsbetiae_contig6099.14637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=596bp|location=Sequence derived from alignment at L-elsbetiae_contig6099:1651..2246+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCTGCCTCCGGAACAGGCCGGGGAGGGCGAGGGTCGGGTTTATC
TTTGCGTTCCGATGGGAACGGAGGTGCGCCGCCCTCTGCCCTGAGAGCAT
CAACAGCCGCCGCCACCGCATTTTGCAGCAGCAAACGCCAAGGGGGCGAA
CTGGTGGACACCAGCAACAGCAGCAGTGATTTCAGTGGCCCTCAGCGTGT
TCGTGTCAGCAACAGCATCATCCCCCCGGACCTCTCCCTCTCGTTCTGGC
CGCCGGCAACGCCCGACAGCAAAACCAGCAGGCTCAAGTCCAAAACAGTC
TCGAGAGCGGCGCGCACAACAACAGCGACGGCGGCCGTCACCCCCTTGCA
TCATCACAGCCAAGCAGAAGCGGCACCACGGGAACCTTCGACCGTTGCAA
GGGACACGATTGCGAGCAGCAGCAGGAAGAATGCGGCGCAATCGCAGTCA
GCAGTTACTACACGCAAGCGCGCCCGACCTGCTGCGGTACCAGCGGCAGC
ACAAGCAACAGCAGCAACAGCAGCAGAGGCGCAGCAACAAGTAGGAAAAG
GGATCAGTCATGGCGGTGGAAAAATCCCATCGACCGGGGTTGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6099:1651..2246+

>mRNA_L-elsbetiae_contig6099.14637.1 ID=mRNA_L-elsbetiae_contig6099.14637.1|Name=mRNA_L-elsbetiae_contig6099.14637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig6099:1651..2246+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCTGCCTCCGGAACAGGCCGGGGAGGGCGAGGGTCGGGTTTATC
TTTGCGTTCCGATGGGAACGGAGGTGCGCCGCCCTCTGCCCTGAGAGCAT
CAACAGCCGCCGCCACCGCATTTTGCAGCAGCAAACGCCAAGGGGGCGAA
CTGGTGGACACCAGCAACAGCAGCAGTGATTTCAGTGGCCCTCAGCGTGT
TCGTGTCAGCAACAGCATCATCCCCCCGGACCTCTCCCTCTCGTTCTGGC
CGCCGGCAACGCCCGACAGCAAAACCAGCAGGCTCAAGTCCAAAACAGTC
TCGAGAGCGGCGCGCACAACAACAGCGACGGCGGCCGTCACCCCCTTGCA
TCATCACAGCCAAGCAGAAGCGGCACCACGGGAACCTTCGACCGTTGCAA
GGGACACGATTGCGAGCAGCAGCAGGAAGAATGCGGCGCAATCGCAGTCA
GCAGTTACTACACGCAAGCGCGCCCGACCTGCTGCGGTACCAGCGGCAGC
ACAAGCAACAGCAGCAACAGCAGCAGAGGCGCAGCAACAAGTAGGAAAAG
GGATCAGTCATGGCGGTGGAAAAATCCCATCGACCGGGGTTGGCGCGGCG
GCTGCCTCCGGAACAGGCCGGGGAGGGCGAGGGTCGGGTTTATCTTTGCG
TTCCGATGGGAACGGAGGTGCGCCGCCCTCTGCCCTGAGAGCATCAACAG
CCGCCGCCACCGCATTTTGCAGCAGCAAACGCCAAGGGGGCGAACTGGTG
GACACCAGCAACAGCAGCAGTGATTTCAGTGGCCCTCAGCGTGTTCGTGT
CAGCAACAGCATCATCCCCCCGGACCTCTCCCTCTCGTTCTGGCCGCCGG
CAACGCCCGACAGCAAAACCAGCAGGCTCAAGTCCAAAACAGTCTCGAGA
GCGGCGCGCACAACAACAGCGACGGCGGCCGTCACCCCCTTGCATCATCA
CAGCCAAGCAGAAGCGGCACCACGGGAACCTTCGACCGTTGCAAGGGACA
CGATTGCGAGCAGCAGCAGGAAGAATGCGGCGCAATCGCAGTCAGCAGTT
ACTACACGCAAGCGCGCCCGACCTGCTGCGGTACCAGCGGCAGCACAAGC
AACAGCAGCAACAGCAGCAGAGGCGCAGCAACAAGTAGGAAAAGGGATCA
GTCATGGCGGTGGAAAAATCCCATCGACCGGGGTTGGC
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