mRNA_L-elsbetiae_contig6099.14638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6099.14638.1
Unique NamemRNA_L-elsbetiae_contig6099.14638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6099.14638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6099contigL-elsbetiae_contig6099:2377..3673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size473
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.3729851-CDS-L-elsbetiae_contig6099:2376..27061622816665.3729851-CDS-L-elsbetiae_contig6099:2376..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6099 2377..2706 +
1691683724.0432816-CDS-L-elsbetiae_contig6099:2376..27061691683724.0432816-CDS-L-elsbetiae_contig6099:2376..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6099 2377..2706 +
1622816665.383438-CDS-L-elsbetiae_contig6099:3531..36721622816665.383438-CDS-L-elsbetiae_contig6099:3531..3672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6099 3532..3672 +
1691683724.0571709-CDS-L-elsbetiae_contig6099:3531..36721691683724.0571709-CDS-L-elsbetiae_contig6099:3531..3672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6099 3532..3672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6099.14638.1prot_L-elsbetiae_contig6099.14638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6099 2377..3672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6099.14638.1

>prot_L-elsbetiae_contig6099.14638.1 ID=prot_L-elsbetiae_contig6099.14638.1|Name=mRNA_L-elsbetiae_contig6099.14638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
STASNTKTATTPACVSVDRLSAQEEGGGGPAPAGHQQRRPLIEQAATTSA
AARAKEGPTPATATSARPTSASSAGASGGPSLGARAGVAGEGTQAGAGAG
PRTRATPTPSATTAAATRPRMYSSLEDLRVRVGKKAEDDEDDDDDDDDSF
ELNVKLE
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mRNA from alignment at L-elsbetiae_contig6099:2377..3673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6099.14638.1 ID=mRNA_L-elsbetiae_contig6099.14638.1|Name=mRNA_L-elsbetiae_contig6099.14638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1297bp|location=Sequence derived from alignment at L-elsbetiae_contig6099:2377..3673+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACTGCAAGCAACACCAAAACGGCCACCACTCCTGCTTGCGTGAGCGT
TGACCGCCTCAGCGCTCAGGAGGAAGGCGGCGGTGGCCCGGCGCCCGCTG
GACACCAACAGCGGCGACCGCTGATAGAGCAGGCCGCCACCACCAGCGCC
GCTGCCAGAGCCAAGGAGGGGCCAACACCGGCAACGGCAACCTCGGCGCG
TCCTACCTCGGCCTCTTCTGCTGGTGCAAGCGGCGGCCCTTCTCTGGGGG
CACGGGCCGGCGTTGCTGGCGAGGGGACACAAGCCGGAGCAGGCGCTGGG
CCTCGGACACGGGCAACTCCAACGCCCTCGGTAAGTGGTGTCAGGTGCAG
CACATATTTACATATGTAATTATATTCTAGCGTTGGCACGGCGGTGGTTT
CGGCCGGAAATACTGTGCCGTTTTCGCAAGGCTTTGGTCCAGACCGCGTG
AGAGCATGTCTCACTCTGCTGTGTTGTTGATTTAACGCGGCGGAGAACCG
TCAATTGGACGACAAGCGGGCGCAAGAAGAGAGGAGAAGCTCTCTTTTAA
GGCCGCAGACAACAATGTGTTCGACGCAAAGTGACATCCATATCTATCTA
CTGTTTTGGCAAATATTGCGGGTCCCGCTGGCTGTTTTTAGTTGCTACTT
GAACTCGGAAACGAATCGGAAGGTGGATGCTTGCCAACGGGCATCGGCCA
CACAATTGCTGTACCGTCCCCCTTGAAATCCTACATACATACTTCTAACT
AGAAACACGAAGAGATATTATTGCGGTCGTGCGGACGAGAACGACGGCGA
AAACTGCTGTGTGTACGGACGGGCATTGAAAGTCGTATGCGGTGCAGCGT
GTTAAATGAATGCACGCGTGCGCCTCCAATTGTCGAGTATGTTCTCACAA
AAACTATGTATATTGAAAGATAAACCAGATAGTCTAATCATAAAAACGGA
ACCGAACCCACACTGAAACGGGACTCCGTGGGTTCAACCGGTATTCCATA
TAAATAGTGGCGTAAAGATCGGTCCGGCCGAGTAGAAAAACACCTAAAAT
GTAAATGTCCGAAGGAACTCAAGACCTCCCCTGCAGAACCCTGCCTTATT
ATTCTTACGCGTGGTTGATTTCACGCGCGCGTTGTTATCTGCTCCTGCTC
GCAAGGCAACGACAGCCGCAGCTACACGGCCCAGAATGTACTCATCGCTG
GAAGACCTGCGGGTGAGGGTTGGCAAGAAGGCCGAGGACGATGAGGACGA
CGATGATGACGATGACGACAGCTTCGAGCTGAACGTGAAGCTGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6099:2377..3673+

>mRNA_L-elsbetiae_contig6099.14638.1 ID=mRNA_L-elsbetiae_contig6099.14638.1|Name=mRNA_L-elsbetiae_contig6099.14638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig6099:2377..3673+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACTGCAAGCAACACCAAAACGGCCACCACTCCTGCTTGCGTGAGCGT
TGACCGCCTCAGCGCTCAGGAGGAAGGCGGCGGTGGCCCGGCGCCCGCTG
GACACCAACAGCGGCGACCGCTGATAGAGCAGGCCGCCACCACCAGCGCC
GCTGCCAGAGCCAAGGAGGGGCCAACACCGGCAACGGCAACCTCGGCGCG
TCCTACCTCGGCCTCTTCTGCTGGTGCAAGCGGCGGCCCTTCTCTGGGGG
CACGGGCCGGCGTTGCTGGCGAGGGGACACAAGCCGGAGCAGGCGCTGGG
CCTCGGACACGGGCAACTCCAACGCCCTCGAGCACTGCAAGCAACACCAA
AACGGCCACCACTCCTGCTTGCGTGAGCGTTGACCGCCTCAGCGCTCAGG
AGGAAGGCGGCGGTGGCCCGGCGCCCGCTGGACACCAACAGCGGCGACCG
CTGATAGAGCAGGCCGCCACCACCAGCGCCGCTGCCAGAGCCAAGGAGGG
GCCAACACCGGCAACGGCAACCTCGGCGCGTCCTACCTCGGCCTCTTCTG
CTGGTGCAAGCGGCGGCCCTTCTCTGGGGGCACGGGCCGGCGTTGCTGGC
GAGGGGACACAAGCCGGAGCAGGCGCTGGGCCTCGGACACGGGCAACTCC
AACGCCCTCGGCAACGACAGCCGCAGCTACACGGCCCAGAATGTACTCAT
CGCTGGAAGACCTGCGGGTGAGGGTTGGCAAGAAGGCCGAGGACGATGAG
GACGACGATGATGACGATGACGACAGCTTCGAGCTGAACGTGAAGCTGGA
GGCAACGACAGCCGCAGCTACACGGCCCAGAATGTACTCATCGCTGGAAG
ACCTGCGGGTGAGGGTTGGCAAGAAGGCCGAGGACGATGAGGACGACGAT
GATGACGATGACGACAGCTTCGAGCTGAACGTGAAGCTGGAG
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