mRNA_L-elsbetiae_contig6094.14635.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6094.14635.1
Unique NamemRNA_L-elsbetiae_contig6094.14635.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6094.14635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6094contigL-elsbetiae_contig6094:8590..9959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6094.14635.1prot_L-elsbetiae_contig6094.14635.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6094 8671..9959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.1982732-UTR-L-elsbetiae_contig6094:8589..86701622816665.1982732-UTR-L-elsbetiae_contig6094:8589..8670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6094 8590..8670 +
1691683723.8969982-UTR-L-elsbetiae_contig6094:8589..86701691683723.8969982-UTR-L-elsbetiae_contig6094:8589..8670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6094 8590..8670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.2127662-CDS-L-elsbetiae_contig6094:8670..88381622816665.2127662-CDS-L-elsbetiae_contig6094:8670..8838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6094 8671..8838 +
1691683723.9102814-CDS-L-elsbetiae_contig6094:8670..88381691683723.9102814-CDS-L-elsbetiae_contig6094:8670..8838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6094 8671..8838 +
1622816665.2289047-CDS-L-elsbetiae_contig6094:9749..99591622816665.2289047-CDS-L-elsbetiae_contig6094:9749..9959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6094 9750..9959 +
1691683723.924367-CDS-L-elsbetiae_contig6094:9749..99591691683723.924367-CDS-L-elsbetiae_contig6094:9749..9959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6094 9750..9959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6094.14635.1

>prot_L-elsbetiae_contig6094.14635.1 ID=prot_L-elsbetiae_contig6094.14635.1|Name=mRNA_L-elsbetiae_contig6094.14635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MPRTRKGSDKDAGGAASSTPRRSPRGLNGVAGVSLPPAAVPSKRADRDAS
TVKESKAKKQRGRDSPSTPAASDAPQATPSPPSEDNHAGGDGTQQAAAGG
GTSSNGASGPAPAAGGAAEEEAAEAG
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mRNA from alignment at L-elsbetiae_contig6094:8590..9959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6094.14635.1 ID=mRNA_L-elsbetiae_contig6094.14635.1|Name=mRNA_L-elsbetiae_contig6094.14635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1370bp|location=Sequence derived from alignment at L-elsbetiae_contig6094:8590..9959+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTTCCCTGCTGGAGTGTTATTTACCGCCCGTAGCCCTTCCACTCCTC
GAGCGTCCATACGCACCAATCTTTTGACGAGATGCCTCGAACTCGAAAAG
GCTCGGACAAAGACGCTGGAGGAGCAGCCTCTTCTACCCCCCGGCGTTCT
CCGCGCGGTTTGAATGGGGTAGCTGGCGTCTCTCTTCCTCCTGCAGCCGT
CCCGAGCAAGAGAGCTGACCGAGATGCCAGCACCGTGAAAGAGTCGAAGG
TAAGAACGAGTCACCTGTGCTCATTCTGTCAGGAAGTGGGGTAGTGGTGC
ACTCTAAGAACCGATACAATACGAGGAACAATCTCATGTTTGCTGATCTG
GCTGGGTTCGGTGTGGTGAGTCACGGTCACATGATGCCCTGTCCACTTTG
GTCGAGTGTCGGGCAGGCCCCCAACGTCAGGACTCCTGGGGGCTACCACC
CTTGAAGGAGCCGGAGTAGCACAGGATGTGTCGAACGTGTTGTTGATTGT
TTGCGGAGACGCGCCAAAATGTGAACATTAAATCGCGTCGATCACGGCGG
GACGACAGAAACAAATTTGTTTTTCGGAAGATAAAGTCAGGCTGATATGA
TCCACACCGAGACGGGGTCTCCTTTGCTTGTGGGATGTGTCGTCGGCCCG
AGCCATCTCCACCGAGACCCGCTATAATTCCACGTATGTACGTACGTACG
TAGGGGCTCTGCACTTGGTGGGTGCTTCGCACCTAATTTCGAGAAGGTTT
ATCGGATGCTTTGTCGATCAAGGTGCTCTGGATACTCTGATGAAAGCTAA
AATGGCGCGCACTTGGTCCAAATTCGCAAAACCCTCTGCACGCTTCACCA
CAAAATGTGTATTTGTGTGCCGGTGCACCTCCCTTGTCTGTTGCCTTTGC
GAAATATTTCGCTAGTATCGCAGTGATTTCTTCTATCAAATCTAGATGTT
AGCTCGCTGTTGTCCAACAGCCCTGCTACCGCCCCCACGCAACTCCCTCG
TTCGTCGTTAGCCTCCCGGCTGACCTGCCTGCTTGGAGGCCCCGCAAAGT
GCGAAGACGCTGCCACTTTTTGCTGTTGCACATGATTTCCCTTGCACCCA
TGTACATACATATAGCACCGCCACCGAGCCTCAAATACGCCAACCCCCCT
CACAAACCAGGCGAAGAAGCAACGAGGTCGAGATTCCCCCTCTACCCCGG
CCGCCTCGGATGCGCCGCAAGCCACGCCCTCGCCGCCGTCGGAGGACAAT
CATGCGGGGGGCGACGGAACTCAGCAGGCCGCGGCTGGCGGGGGCACCAG
TAGCAACGGGGCGTCTGGCCCAGCGCCTGCGGCCGGGGGCGCGGCAGAGG
AGGAAGCGGCCGAAGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6094:8590..9959+

>mRNA_L-elsbetiae_contig6094.14635.1 ID=mRNA_L-elsbetiae_contig6094.14635.1|Name=mRNA_L-elsbetiae_contig6094.14635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig6094:8590..9959+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGAACTCGAAAAGGCTCGGACAAAGACGCTGGAGGAGCAGCCTC
TTCTACCCCCCGGCGTTCTCCGCGCGGTTTGAATGGGGTAGCTGGCGTCT
CTCTTCCTCCTGCAGCCGTCCCGAGCAAGAGAGCTGACCGAGATGCCAGC
ACCGTGAAAGAGTCGAAGATGCCTCGAACTCGAAAAGGCTCGGACAAAGA
CGCTGGAGGAGCAGCCTCTTCTACCCCCCGGCGTTCTCCGCGCGGTTTGA
ATGGGGTAGCTGGCGTCTCTCTTCCTCCTGCAGCCGTCCCGAGCAAGAGA
GCTGACCGAGATGCCAGCACCGTGAAAGAGTCGAAGGCGAAGAAGCAACG
AGGTCGAGATTCCCCCTCTACCCCGGCCGCCTCGGATGCGCCGCAAGCCA
CGCCCTCGCCGCCGTCGGAGGACAATCATGCGGGGGGCGACGGAACTCAG
CAGGCCGCGGCTGGCGGGGGCACCAGTAGCAACGGGGCGTCTGGCCCAGC
GCCTGCGGCCGGGGGCGCGGCAGAGGAGGAAGCGGCCGAAGCGGGGGCGA
AGAAGCAACGAGGTCGAGATTCCCCCTCTACCCCGGCCGCCTCGGATGCG
CCGCAAGCCACGCCCTCGCCGCCGTCGGAGGACAATCATGCGGGGGGCGA
CGGAACTCAGCAGGCCGCGGCTGGCGGGGGCACCAGTAGCAACGGGGCGT
CTGGCCCAGCGCCTGCGGCCGGGGGCGCGGCAGAGGAGGAAGCGGCCGAA
GCGGGG
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