mRNA_L-elsbetiae_contig6094.14634.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6094.14634.1 vs. uniprot
Match: A0A6H5JNP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE) HSP 1 Score: 280 bits (715), Expect = 2.090e-83 Identity = 197/394 (50.00%), Postives = 249/394 (63.20%), Query Frame = 2 Query: 35 AVGANDETMTDEVRQDRAQRALQVAVVAGFLDDSRNVQESCLGLCNACRDGVPAKRIVIQDGVPLSLRSVILPNGSSAV--DDRPATRVLRARRVLKLRMM-----WQEEPPEDLIDHAARATGLSDVNLTSVSWPEGIKEVQLVLFNQAVEGVAWPESLERLSFYSLGFNLPFQLPWTPGRHLVFPPLRRGLFNQPLQGASFPSGLREIYLGNNFDQPIEEVVWPDGLERLSLPGFDHSIDNVRWPPRLVALEFLCPSQIVLRETEGLRVESLDREVQGFNRPFSTLPASLETLWLSNAFAQDCLADIAWPNGXXXXXXXXXXXXXXXXXXXXXXSLKDIYSTIEIDGDNPPPAGCKVTVVTDYDTESQSYDEDEHAFEVMLDEDWYDDDLDN 1195 A A +E +E +DRA RALQ AVV+GF+ D R Q SCLGLCNACR+GVP +R++I +GVP + +++LP A D P TRVL+ RRVL+L+ W E ED+ + RA + V+ V WPEGIKEV L+ F++ VEGVAWP+ LE LSF +L +L P RG FN+ L GA+FPSGLREI+LG+ FDQPIE+VVWP GLERLSLPG + +LEF PSQI LRE R++ L+ FN PF+ LPASLE LWL N F Q L + WP+ XXXXXXXXXXXXXXXXXXXXXX +++Y E+D P + C +T+V DYDTESQS+D + F+ D D+YD DLD+ Sbjct: 2 AAAAVEECPGEEHMRDRALRALQFAVVSGFVKDYRATQASCLGLCNACREGVPVERMLIAEGVPQTRLAMVLPKVVQAQWEADIPPTRVLQPRRVLRLKWTFRTSAWWTETTEDIPNSWVRALTMGIVDFDEVQWPEGIKEVNLLSFDKEVEGVAWPKGLECLSFCAL------RLRCGPSGFA-----NRGSFNRSLVGANFPSGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTKLPASLEALWLGNNFCQS-LEGVNWPSXXXXXXXXXXXXXXXXXXXXXXX-XQNLYLVNEMDWLEYPES-CMLTIVKDYDTESQSFDAERDGFDEW-DHDFYDPDLDD 380
BLAST of mRNA_L-elsbetiae_contig6094.14634.1 vs. uniprot
Match: A0A6H5JJV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE) HSP 1 Score: 269 bits (687), Expect = 1.910e-79 Identity = 188/377 (49.87%), Postives = 239/377 (63.40%), Query Frame = 2 Query: 29 MAAVGANDETMTDEVRQDRAQRALQVAVVAGFLDDSRNVQESCLGLCNACRDGVPAKRIVIQDGVPLSLRSVILPNGSSAVDDR--PATRVLRARRVLKLRMM-----WQEEPPEDLIDHAARATGLSDVNLTSVSWPEGIKEVQLVLFNQAVEGVAWPESLERLSFYSLGFNLPFQLPWTPGRHLVFPPLRRGLFNQPLQGASFPSGLREIYLGNNFDQPIEEVVWPDGLERLSLPGFDHSIDNVRWPPRLVALEFLCPSQIVLRETEGLRVESLDREVQGFNRPFSTLPASLETLWLSNAFAQDCLADIAWPNGXXXXXXXXXXXXXXXXXXXXXXSLKDIYSTIEIDGDNPPPAGCKVTVVTDYDTESQSYDED 1138 MAAV A + ++E +DRA R LQVAVV+GF+ D R+VQESCLGLCNACR+GVP +R+++++ VP L +++LPN A + P TRVL RRVL+L W E + +A + DV+ V WPEG +E+ L+LF++ VEG+AWP LE LSF +L W H+ RG FN+ L GA+FP+GLREI+LG+ FDQPIE+VVWP GLERLSLPG + +LEF P QI LRE R++ LD V F+ PF+TLPASLETLWL + F Q L + WP XXXXXXXXXXXXXXXXXXXXXX +++Y E+D PP+GCKVTVV D D + YD D Sbjct: 1 MAAV-AMENWSSEEHMRDRALRGLQVAVVSGFMKDCRSVQESCLGLCNACREGVPVERMLVREWVPQILLAMVLPNAVQAQREAEIPPTRVLHPRRVLRLEWTFRSHAWWAESTGQVPKPSAGTPSVGDVDFNEVQWPEGTREISLILFDKPVEGMAWPLGLECLSFCALRSGCGA---W----HVS----DRGSFNRSLVGANFPAGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFTSPLQICLREDPNTRLDELDL-VGVFDSPFTTLPASLETLWLGDEFGQS-LESVNWPXXXXXXXXXXXXXXXXXXXXXXXX-XRNLYLVREVDWVERPPSGCKVTVVKD-DPDDDMYDVD 361
BLAST of mRNA_L-elsbetiae_contig6094.14634.1 vs. uniprot
Match: D8LHT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT8_ECTSI) HSP 1 Score: 213 bits (542), Expect = 4.260e-59 Identity = 163/338 (48.22%), Postives = 205/338 (60.65%), Query Frame = 2 Query: 203 IVIQDGVPLSLRSVILPNGSSAVD--DRPATRVLRARRVLKLRMM-----WQEEPPEDLIDHAARATGLSDVNLTSVSWPEGIKEVQLVLFNQAVEGVAWPESLERLSFYSLGFNLPFQLPWTPGRHLVFPPLRRGLFNQPLQGASFPSGLREIYLGNNFDQPIEEVVWPDGLERLSLPGFDHSIDNVRWPPRLVALEFLCPSQIVLRETEGLRVESLDREVQGFNRPFSTLPASLETLWLSNAFAQDCLADIAWPNGXXXXXXXXXXXXXXXXXXXXXXSLKDIYSTIEIDGDNPPPAGCKVTVVTDYDTESQSYDEDEHAFEVMLDEDWYDDDLDN 1195 ++I +GVP + +LPN A D P TRVL+ RRVL+L+ W E E+ + A A+ + +V+L+ V WPEGIKEV L+LF+ +EGVAWP LERLSF +L + + G RG FN+ L GA+FPS LREI+LG+ FDQPIE+VVWP GLERLS PG + F PSQI LRE R++ L+ FN PF+ LPASLE LWL N F Q L + W XXXXXXXXXXXXXXXXXXXXXX +++Y E+D P + C VT+V DYDTESQS+D + F+ LD D+YD DLDN Sbjct: 1 MLIGEGVPQIRLATVLPNVVQAQRQADIPPTRVLQPRRVLRLKWTFRSRAWWTETTEETPNSWAGASSVGNVDLSEVQWPEGIKEVNLLLFDGDIEGVAWPAGLERLSFCALRLSYG-----SSGF------ANRGSFNRSLVGANFPSDLREIFLGDAFDQPIEDVVWPSGLERLSFPGCNXXXXXXXXXXXXXXXXFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTNLPASLEALWLGNNFCQS-LEGVNWXXXXXXXXXXXXXXXXXXXXXXXXX-XQNLYLVNEMDWLEYPKS-CMVTIVKDYDTESQSFDAERDGFDD-LDHDFYDPDLDN 323
BLAST of mRNA_L-elsbetiae_contig6094.14634.1 vs. uniprot
Match: A0A6H5JK73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK73_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.970e-34 Identity = 125/289 (43.25%), Postives = 159/289 (55.02%), Query Frame = 2 Query: 260 SSAVDDRPATRVLRARRVLKLRMMWQEEPPEDLIDHAARATGLSDVNLTSVSWPEGIKEVQLVLFNQAVEGVAWPESLERLSFYSLGFNLPFQLPWTPGRHLVFPPLRRGLFNQPLQGA--SFPSGLREIYLGNNFDQPIEEVVWPDGLERLSLPGFDHSIDNVRWPPRLVALEFLCPSQIVLRETEGLRVESLDREVQGFNRPFSTLPASLETLWLSNAFAQDCLADIAWPNGXXXXXXXXXXXXXXXXXXXXXXSLKDIYSTIEIDGDNPPPAGCKVTVVTDYDTES 1120 S D PAT R + V ++ P +D +S+V+L V WPEG KEV L+LF++A EG WP SLERLSFY+ G+ + G F L GA SFPSGLR+I+LG FDQPI++VVWP GL+RLS+P F P L P +I L E R++ L FN PF+ LPASLETLWL + F L I WP XXXXXXXXXXXXXXXXXXXXXX +++ E++ PP+GCKV + + D ++ Sbjct: 8 SKFTDASPATSQARVKAV--------DKAPYSSVDDPC----VSNVDLRDVHWPEGTKEVALILFDKAFEGATWPVSLERLSFYAFRSG---------GQSYRVKDI--GSFKLSLVGANFSFPSGLRDIFLGAAFDQPIQDVVWPQGLQRLSVPRFXXXXXXXXXXPALNP-----PWEIRLTEDPNTRLDELGSYWDRFNCPFTHLPASLETLWLGDKFDHS-LEGINWPXXXXXXXXXXXXXXXXXXXXXXXX-XRNLCLLREVNWIERPPSGCKVIIAQEDDLDN 266
BLAST of mRNA_L-elsbetiae_contig6094.14634.1 vs. uniprot
Match: A0A6H5JPY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY0_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.370e-25 Identity = 90/308 (29.22%), Postives = 141/308 (45.78%), Query Frame = 2 Query: 203 IVIQDGVPLSLRSVILPNGSSAVD--DRPATRVLRARRVLKLRMMWQEEPPEDLIDHAARATGLSDVNLTSVSWPEGIKEVQLVLFNQAVEGVAWPESLERLSFYSLGFNLPFQLPWTPGRHLVFPPLRRGLFNQPLQGASFPSGLREIYLGNNFDQPIEEVVWPDGLERLSLPGFDHSIDNVRWPPRLVALEFLCPSQIVLRETEGLRVESLDREVQGFNRPFSTLPASLETLWLSNAFAQDCLADIAWPNGXXXXXXXXXXXXXXXXXXXXXXSLKDIYSTIEIDGDNPPPAGCKVTVVTDYDTES 1120 +++ + +P +L +++L N + P TRVL+ RV + + D +A A + +V+L+ V WPEGIKE+ L+L ++ +EG+ W +F+S + P + P + L G +++ + L LPG D IDN+ W P L +LE PS++ L ET + R V F+ PF+TLPASL TLWL ++F Q L D+ WP+G +L+++Y EI+ PP GC+V VV D+D ES Sbjct: 1 MLVGEWIPQTLLAIVLRNAVQVQQAAEIPPTRVLQPPRV---------KASDQAPDSSADAPSVGNVDLSEVQWPEGIKEIDLLLLDEVIEGMLW---WVWSAFHSARSDFPTSFYYFPSKTLC--------------------GHKDL------------------RDCLYLPGCDQPIDNLWWAPALKSLESSTPSEVRLMETPNTNLHE-PRLVGVFDSPFTTLPASLATLWLGDSFCQS-LEDVTWPSGLVTLGLGSTLSEFDSVSWSS--NLRNLYLVDEIEWAEYPP-GCRVNVVMDFDIES 253
BLAST of mRNA_L-elsbetiae_contig6094.14634.1 vs. uniprot
Match: D8LI75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI75_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 2.550e-13 Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 2 Query: 656 NFDQPIEEVVWPDGLERLSLPGFDHSIDNVRWPPRLVALEFLCPSQIVLRETEGLRVESLDREVQ-GFNRPF---STLPASLETLWLSNAFA-QDCLADIAWPNGXXXXXXXXXXXXXXXXXXXXXXSLKDIYSTIEIDGDNPPPAGCKVTVV 1099 +F+QPI+ V WPDGLER+SLPG +LEFL P +I+LRE + +E L+ + GFN+ S LP SLE LWLS+A QD + WP G +L+ +Y E+ P GC+V V+ Sbjct: 2 SFNQPIDRVAWPDGLERMSLPGXXXXXXXXXXXXXXKSLEFLPPGEILLREDPEITLERLNFTTESGFNQSLGENSGLPVSLERLWLSDATRPQD---GVVWPRGLVTLGLGDSFPNTAPRFEWPP-TLRRLYLVDELSSARRVPRGCEVKVL 150 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6094.14634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6094.14634.1 >prot_L-elsbetiae_contig6094.14634.1 ID=prot_L-elsbetiae_contig6094.14634.1|Name=mRNA_L-elsbetiae_contig6094.14634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=405bp MAAVGANDETMTDEVRQDRAQRALQVAVVAGFLDDSRNVQESCLGLCNACback to top mRNA from alignment at L-elsbetiae_contig6094:5383..7636+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6094.14634.1 ID=mRNA_L-elsbetiae_contig6094.14634.1|Name=mRNA_L-elsbetiae_contig6094.14634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2254bp|location=Sequence derived from alignment at L-elsbetiae_contig6094:5383..7636+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6094:5383..7636+ >mRNA_L-elsbetiae_contig6094.14634.1 ID=mRNA_L-elsbetiae_contig6094.14634.1|Name=mRNA_L-elsbetiae_contig6094.14634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2430bp|location=Sequence derived from alignment at L-elsbetiae_contig6094:5383..7636+ (Laminarionema elsbetiae ELsaHSoW15)back to top |