mRNA_L-elsbetiae_contig6086.14626.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6086.14626.1
Unique NamemRNA_L-elsbetiae_contig6086.14626.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A6H5K1F0_9PHAE (IPPc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1F0_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 6.830e-55
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 1
Query:    1 EFRDLSCEFSRGRVEGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGTQ 291
            EFRDL CEFSRGRVEGGVGILDHD VFWLGDLNYRVSE VH+DEVFRRCRSK+G+ FLQ+HDQLNLERARG RAAFG+FEEAPITFPPTYKYQPGTQ
Sbjct:  272 EFRDLPCEFSRGRVEGGVGILDHDVVFWLGDLNYRVSETVHLDEVFRRCRSKEGKVFLQAHDQLNLERARGPRAAFGDFEEAPITFPPTYKYQPGTQ 368          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A836C9N6_9STRA (Inositol 5-phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9N6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.710e-21
Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 EFRDLS-CEFSRGRVE----GGV------GILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGT 288
            EFR L    + R  +E    GGV      GI DHD VFWLGDLNYR+ E V   EV +R RS  G  +L++ DQLNLER +G  AAF +FEE  +TF PTYKY+ GT
Sbjct:  264 EFRGLERTPYGRPNMEQKGGGGVQEMPTFGIEDHDVVFWLGDLNYRIIEKVATSEVLKRVRSPAGLEYLRACDQLNLERKKG--AAFADFEEGVLTFQPTYKYEVGT 368          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: F0YCF2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCF2_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.020e-20
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   58 ILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGT 288
            ILDHD VFWLGDLNYRV E +   E F R  ++D  AFL ++DQLNLERA G    F  F+E PI FP TYKY+ GT
Sbjct:    7 ILDHDVVFWLGDLNYRVREGIATAECFARAEARDD-AFLLANDQLNLERAAGR--VFAGFDEGPIGFPVTYKYEAGT 80          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A7M3S7J5_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Globisporangium nunn TaxID=82942 RepID=A0A7M3S7J5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.640e-20
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 EFRDL----SCEFSRGRVEGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGT 288
            EFRD     SC  +R ++ G   IL+HD VFWLGDLNYR++E V V+ VF+   S   +  L+  DQLN+ER RG  A F  FEE  ITFPPTYKYQ GT
Sbjct:  123 EFRDSDYDSSCNDAR-QLSGEPPILNHDFVFWLGDLNYRINEEVPVEVVFQHAESGMFKELLRL-DQLNIERKRG--AVFRGFEEGAITFPPTYKYQAGT 218          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A7I6MWP8_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Pythium prolatum TaxID=104971 RepID=A0A7I6MWP8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.140e-20
Identity = 50/91 (54.95%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   19 CEFSRGRV-EGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGR-AFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPG 285
            C FS G      VGIL HD VFWLGDLNYR+ + V VDEVFR         A L  HDQLN+ER RG       FEE P+ F PTYKYQ G
Sbjct:  163 CAFSSGLAGSSSVGILSHDFVFWLGDLNYRIQDDVAVDEVFRLSEGGPSHWAKLSPHDQLNIERRRGN--VLKGFEEGPLLFAPTYKYQAG 251          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A7I6MZJ5_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Phytophthora undulata TaxID=127444 RepID=A0A7I6MZJ5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.370e-19
Identity = 50/92 (54.35%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   19 CEFSRGRV-EGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGR-AFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGT 288
            C  S G V    VGIL HD VFWLGDLNYR+ + V +DEVFR         A L +HDQLN+ER RG       FEE P+ F PTYKYQ GT
Sbjct:  175 CVTSSGLVGSSSVGILSHDFVFWLGDLNYRIQDDVAMDEVFRLSEGGPTHWAKLWAHDQLNIERRRGN--VLKGFEEGPLQFAPTYKYQAGT 264          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A4D9D9A4_9STRA (Rho-GAP domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9A4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.490e-19
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   40 VEGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGTQA 294
            ++ G+ ILDHD VF++GDLNYR+ E+V  +E F + ++ D   FLQ +DQLN+ER +G    F  F E+P+ F PTYKYQPGT +
Sbjct:  254 LQTGISILDHDVVFFMGDLNYRLDESVDTEECFAKLKAHD-LDFLQRYDQLNMERIQGR--VFSGFSESPLNFLPTYKYQPGTSS 335          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A5D6XQQ9_9STRA (Rho-GAP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQQ9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.660e-19
Identity = 51/99 (51.52%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 EFRDLSCEF---SRGRVEGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGT 288
            EFRD   +       ++ G   IL+HD VFWLGDLNYR+++ V VD VF+   S   +  LQ  DQL LER RG   AF  F+E  ITFPPTYKYQ GT
Sbjct:  234 EFRDSDSDSWGADTRQLSGEPAILNHDFVFWLGDLNYRIADDVPVDVVFQHAESGGFKELLQ-RDQLTLERKRGR--AFRGFKEGAITFPPTYKYQAGT 329          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: A0A484EI01_BRELC (Rho-GAP domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EI01_BRELC)

HSP 1 Score: 87.8 bits (216), Expect = 4.130e-18
Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   46 GGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGT 288
            G   IL+HD VFW+GDLNYR+ + +  DEVFR   SK     L  HDQL  ER  G       FEE P+TFPPTYK+Q GT
Sbjct:  296 GSPSILNHDFVFWIGDLNYRIQDTLLTDEVFRLAESKQSLHELVQHDQLTKERRAGK--VLQGFEEGPLTFPPTYKFQAGT 374          
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Match: G5A0N1_PHYSP (Multiple inositol polyphosphate phosphatase-like protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A0N1_PHYSP)

HSP 1 Score: 87.4 bits (215), Expect = 5.620e-18
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    7 RDLSCEFSRGRVEGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCRSKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGT 288
            +D+S  F  G       IL+HD VFW+GDLNYR+ +A+  +EVFR   S      L  HDQL +ER RG       F+E P+TFPPTYK+Q GT
Sbjct:  276 QDISGRFWSGEPS----ILNHDFVFWIGDLNYRIQDALTTEEVFRLAESGRSLDKLVQHDQLTIERQRGN--VLKGFQEGPLTFPPTYKFQAGT 363          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6086.14626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1F0_9PHAE6.830e-5589.69IPPc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C9N6_9STRA1.710e-2152.34Inositol 5-phosphatase n=1 Tax=Tribonema minus Tax... [more]
F0YCF2_AURAN1.020e-2059.74Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7M3S7J5_9STRA1.640e-2054.00Putative inositol polyphosphate 5-phosphatase (Fra... [more]
A0A7I6MWP8_9STRA5.140e-2054.95Putative inositol polyphosphate 5-phosphatase (Fra... [more]
A0A7I6MZJ5_9STRA2.370e-1954.35Putative inositol polyphosphate 5-phosphatase (Fra... [more]
A0A4D9D9A4_9STRA2.490e-1950.59Rho-GAP domain-containing protein n=4 Tax=Monodops... [more]
A0A5D6XQQ9_9STRA8.660e-1951.52Rho-GAP domain-containing protein n=1 Tax=Pythium ... [more]
A0A484EI01_BRELC4.130e-1853.09Rho-GAP domain-containing protein n=1 Tax=Bremia l... [more]
G5A0N1_PHYSP5.620e-1847.87Multiple inositol polyphosphate phosphatase-like p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6086contigL-elsbetiae_contig6086:563..1823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.2e-46
Seed eggNOG ortholog2880.D7G6P2
KEGG rclassRC00078
KEGG koko:K01099,ko:K20279
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-26_000170.1
EC3.1.3.36
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.489665-CDS-L-elsbetiae_contig6086:562..7631622816664.489665-CDS-L-elsbetiae_contig6086:562..763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6086 563..763 +
1691683723.3621469-CDS-L-elsbetiae_contig6086:562..7631691683723.3621469-CDS-L-elsbetiae_contig6086:562..763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6086 563..763 +
1622816664.50366-CDS-L-elsbetiae_contig6086:1724..18231622816664.50366-CDS-L-elsbetiae_contig6086:1724..1823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6086 1725..1823 +
1691683723.3745182-CDS-L-elsbetiae_contig6086:1724..18231691683723.3745182-CDS-L-elsbetiae_contig6086:1724..1823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6086 1725..1823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6086.14626.1prot_L-elsbetiae_contig6086.14626.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6086 563..1823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6086.14626.1

>prot_L-elsbetiae_contig6086.14626.1 ID=prot_L-elsbetiae_contig6086.14626.1|Name=mRNA_L-elsbetiae_contig6086.14626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
EFRDLSCEFSRGRVEGGVGILDHDAVFWLGDLNYRVSEAVHVDEVFRRCR
SKDGRAFLQSHDQLNLERARGTRAAFGEFEEAPITFPPTYKYQPGTQAR*
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mRNA from alignment at L-elsbetiae_contig6086:563..1823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6086.14626.1 ID=mRNA_L-elsbetiae_contig6086.14626.1|Name=mRNA_L-elsbetiae_contig6086.14626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1261bp|location=Sequence derived from alignment at L-elsbetiae_contig6086:563..1823+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTTCCGCGACCTCTCGTGCGAGTTCAGCCGTGGGCGGGTAGAGGGGGG TGTTGGAATACTGGACCACGATGCCGTCTTCTGGCTGGGCGACCTTAACT ACCGCGTTTCGGAGGCGGTTCATGTGGATGAGGTGTTCAGGCGGTGCCGC AGCAAGGACGGGAGGGCCTTCCTGCAGTCCCACGATCAGCTCAATCTAGA GGTGCTCGTTGGCTAGGATGCGGGTGTTTTGCGGTTTCATGACGCAGTAT ATGCAACGAACGCGTTGTATTGCGGTTAAAAACACGTCGTACATCGGCAG TAGACGTGCTCGTTGGCTAGGATGCGGGTGTTTTGCGGTTTCATGACGCA GTTCAACGAACGCGTTGTATTGCGGTTTGAAATATGTGGACTGCGGCTTA GTTTGTGTGGTGCGAGATGTGCAGCAAGCGCATGCATTGTGGCGGCACTA AATTGCGGGGTCCCGTAGGAAGGAAAGAAAGCGATTGCTTCGACTTGAAC GTTCAACTTGGTACTGATACCAGTCACAGGACTTTCATTAAGCTTGTGGA GAAAGGCTGCGGGGCTGATTGGGTTGGACGATAACAGTACGAGTGTTGCC AGAGGTTTCACCAAAACAGTGTATTCACGACACCCACTAGGCGATTCAGG ATGCGTGGTGACCAACAGCTAGCGGTAGGTTACCACGAGATTTAATTCCG CCGCTGCCCGGCTGAAAATTTGCAGACTTCAGCCACATCGCCGTCCTTGC CGACGAAGAAAGATGCATGAAAACATCACACCCCTCGTCTCTCCCCCGTC TTACCGTAGGTGACACAAGATACCACACCCCCTGGGCCGAATTTTAGAGC TCCATTGCTCCGTAACGAAGAGGGTGCCGGCACCAAACGACACATTTTCG GACAGCCCTAGTCTAAATCTTTCCAACGCACCCTCTTTCGGCACTAAATA GCTCTCTTCTTGCTTGGGAGGAATCGAGCTTTGAAAATATGTCCAAGGGG TGTGGTATCTTGTGTCACCTACGGCAATCGCCATGTTTCTTTGCATGACG CCGCTTATGAAAATACTCCGTGCTCTGTCTGTCCGCTCGCACGTGTGTGT GCCTGTGTGCTCTTGCTTCTACTTTGGCCTGCTCGGTGCTGGTGCCGGTT TTGGTGTTGCAGAGGGCGCGCGGGACACGGGCAGCGTTTGGCGAGTTCGA AGAGGCCCCGATAACGTTCCCGCCGACCTACAAGTATCAACCGGGCACAC AGGCACGTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6086:563..1823+

>mRNA_L-elsbetiae_contig6086.14626.1 ID=mRNA_L-elsbetiae_contig6086.14626.1|Name=mRNA_L-elsbetiae_contig6086.14626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig6086:563..1823+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTTCCGCGACCTCTCGTGCGAGTTCAGCCGTGGGCGGGTAGAGGGGGG
TGTTGGAATACTGGACCACGATGCCGTCTTCTGGCTGGGCGACCTTAACT
ACCGCGTTTCGGAGGCGGTTCATGTGGATGAGGTGTTCAGGCGGTGCCGC
AGCAAGGACGGGAGGGCCTTCCTGCAGTCCCACGATCAGCTCAATCTAGA
GGAGTTCCGCGACCTCTCGTGCGAGTTCAGCCGTGGGCGGGTAGAGGGGG
GTGTTGGAATACTGGACCACGATGCCGTCTTCTGGCTGGGCGACCTTAAC
TACCGCGTTTCGGAGGCGGTTCATGTGGATGAGGTGTTCAGGCGGTGCCG
CAGCAAGGACGGGAGGGCCTTCCTGCAGTCCCACGATCAGCTCAATCTAG
AGAGGGCGCGCGGGACACGGGCAGCGTTTGGCGAGTTCGAAGAGGCCCCG
ATAACGTTCCCGCCGACCTACAAGTATCAACCGGGCACACAGGCACGTTA
GAGGGCGCGCGGGACACGGGCAGCGTTTGGCGAGTTCGAAGAGGCCCCGA
TAACGTTCCCGCCGACCTACAAGTATCAACCGGGCACACAGGCACGTTAG
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