mRNA_L-elsbetiae_contig6083.14624.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6083.14624.1
Unique NamemRNA_L-elsbetiae_contig6083.14624.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: D7FYI4_ECTSI (S5 DRBM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FYI4_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 8.260e-136
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 609
            EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNG+PHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF
Sbjct:   87 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 281
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A835Z6C9_9STRA (40S ribosomal protein S2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C9_9STRA)

HSP 1 Score: 330 bits (846), Expect = 1.760e-112
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 585
            E QIVD FLG KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGD +GHVGLGVKCAKEVATAIRGAI IAKMSVVP+RRGYWGRRNG PHTVP KVTGKCGSVRVRLIPAPRGTGLVA+PV +KLL MAGVEDCYT S GHTRT+GNFVKAV+FAL KTYGYLSPELW PT F+++PYQEHTDFLAK+
Sbjct:   63 ECQIVDKFLGDKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDSNGHVGLGVKCAKEVATAIRGAITIAKMSVVPIRRGYWGRRNGQPHTVPCKVTGKCGSVRVRLIPAPRGTGLVASPVSRKLLGMAGVEDCYTCSNGHTRTMGNFVKAVFFALGKTYGYLSPELWAPTQFKASPYQEHTDFLAKS 249
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A7S4UVA6_9DINO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S4UVA6_9DINO)

HSP 1 Score: 309 bits (792), Expect = 6.550e-104
Identity = 154/186 (82.80%), Postives = 169/186 (90.86%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 582
            EYQIVD+FL + LKDEVMKIMPVQK SAAGQ TRFKAFVAVGD +GHVGLGVKCA EVATAIRGAII+AK+SVVP+RRGYWG++ GLPHTV NKVTGKCGSV VRLIPAPRGTGLVA+PVPKKLL MAGVED Y+ S GHTRT+GNF+KAVY AL+KTYGYLSPELWKPTVF   PYQE+TDFL+K
Sbjct:   76 EYQIVDYFLPN-LKDEVMKIMPVQKQSAAGQRTRFKAFVAVGDYNGHVGLGVKCASEVATAIRGAIILAKISVVPIRRGYWGKKVGLPHTVANKVTGKCGSVSVRLIPAPRGTGLVASPVPKKLLGMAGVEDVYSQSTGHTRTMGNFIKAVYTALSKTYGYLSPELWKPTVFTPTPYQEYTDFLSK 260
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A3M6TJ54_POCDA (40S ribosomal protein S2 n=3 Tax=Astrocoeniina TaxID=123757 RepID=A0A3M6TJ54_POCDA)

HSP 1 Score: 303 bits (776), Expect = 1.710e-101
Identity = 145/187 (77.54%), Postives = 167/187 (89.30%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 585
            E++I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD SGHVGLGVKC+KEVATAIRGAII+AK+SV+PVRRGYWG + G PHTVP KVTGKCGSVRVRLIPAPRGTG+V+APVPKKLL MAG+EDCYTS+RG T TLGNF KA + A++KT+ YL+P++WK TVF  APYQE TDFLAKN
Sbjct:   75 EHEIIDFFLGSHLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSSGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGQPHTVPCKVTGKCGSVRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSARGQTATLGNFAKATFAAISKTFCYLTPDMWKDTVFTKAPYQEFTDFLAKN 261
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A7S2BZ58_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZ58_9STRA)

HSP 1 Score: 303 bits (777), Expect = 2.610e-101
Identity = 150/198 (75.76%), Postives = 170/198 (85.86%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFL----AKNPAPKAAE 606
            EYQIVD FLG+KLKDEVM IMPVQK + AGQ TRFKAFVAVGD SGHVGLGVKCAKEVATAIRGAII+AKM+++P+RRG+WG++ G PHTV  K+TGKCGSVRVRLIPAPRGTGLVAAP  KK+L+MAG++DCYTSSRGHTRT+GNF+KA +FALAK+YGYLSPELW  T F   P+QEHTDFL     K  APK  E
Sbjct:   98 EYQIVDLFLGTKLKDEVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEVATAIRGAIIMAKMNIIPIRRGFWGKQVGQPHTVSQKLTGKCGSVRVRLIPAPRGTGLVAAPATKKILAMAGLDDCYTSSRGHTRTMGNFIKACFFALAKSYGYLSPELWPETQFLPPPFQEHTDFLKNAGGKEAAPKPFE 295
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A484DZT2_BRELC (S5 DRBM domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A484DZT2_BRELC)

HSP 1 Score: 302 bits (773), Expect = 2.950e-101
Identity = 147/191 (76.96%), Postives = 166/191 (86.91%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 597
            E +IV++FL + LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVATAIRGAII+AK+S+VPVRRGYWGR  G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAPVPKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW+   F  +PYQE+TDFLAK    K
Sbjct:   71 ECEIVNYFLEASLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDSNGHIGLGVKCAKEVATAIRGAIILAKISLVPVRRGYWGRMVGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPVPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWEQHTFGQSPYQEYTDFLAKTAIKK 261
[Close]
BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A024U0H5_9STRA (40S ribosomal protein S2 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U0H5_9STRA)

HSP 1 Score: 302 bits (773), Expect = 3.050e-101
Identity = 146/186 (78.49%), Postives = 164/186 (88.17%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 582
            E +IVD+FL  +LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GHVGLGVKCAKEVATAIRGAII AKM++VPVRRGYWG+ +GLPHTV NKVTGKCGSVRVRLIPAPRGTGL AAP PKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW PT F   PYQEH+D+L+K
Sbjct:   72 ESEIVDYFLKDRLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDHAGHVGLGVKCAKEVATAIRGAIINAKMNLVPVRRGYWGKMSGLPHTVCNKVTGKCGSVRVRLIPAPRGTGLCAAPAPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWTPTKFTPTPYQEHSDYLSK 257
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A7R9UB19_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB19_9STRA)

HSP 1 Score: 300 bits (769), Expect = 1.470e-100
Identity = 146/186 (78.49%), Postives = 164/186 (88.17%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 582
            E  IVD FLG KLKDEVMKIMPVQK + AGQ TRFKAFVAVGDE GHVGLGVKCAKEVATAIRGAI  AK++++PVRRGYWGR+ G PHTVP  VTGKCGSVRVRLIPAPRGTGLVAAP  K++L++AG+EDCYTSSRGHTRT+GNF+KAV+FAL+KTYG+L+P+LW PT F    YQEHTDFLAK
Sbjct:   70 EAPIVDHFLGPKLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDEDGHVGLGVKCAKEVATAIRGAISNAKLALIPVRRGYWGRKLGNPHTVPTAVTGKCGSVRVRLIPAPRGTGLVAAPATKRILALAGLEDCYTSSRGHTRTMGNFIKAVFFALSKTYGFLTPDLWTPTTFMPHLYQEHTDFLAK 255
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BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: A0A067CWA9_SAPPC (40S ribosomal protein S2 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CWA9_SAPPC)

HSP 1 Score: 300 bits (767), Expect = 2.330e-100
Identity = 147/191 (76.96%), Postives = 162/191 (84.82%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 597
            E +IVD+FL  +LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVATAIRGAI+ AKMS+VPVRRGYWG  +GLPHTV NKVTGKCGSVRVRLIPAPRGTGL AAP PKKLL MAG+EDCYTS+RGHTRTLGNFVKA Y+AL  TY YL+P+LW    F   PYQEH DFL+K  A K
Sbjct:   70 ESEIVDYFLKDRLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDHAGHIGLGVKCAKEVATAIRGAIVQAKMSLVPVRRGYWGNMSGLPHTVCNKVTGKCGSVRVRLIPAPRGTGLCAAPAPKKLLGMAGIEDCYTSARGHTRTLGNFVKATYYALRNTYSYLTPDLWAENKFGKTPYQEHADFLSKVIAKK 260
[Close]
BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Match: M4BLS4_HYAAE (S5 DRBM domain-containing protein n=19 Tax=Oomycota TaxID=4762 RepID=M4BLS4_HYAAE)

HSP 1 Score: 301 bits (771), Expect = 3.610e-100
Identity = 147/191 (76.96%), Postives = 165/191 (86.39%), Query Frame = 1 
Query:   25 EYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 597
            E +IV++FL S LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVATAIRGAII+AK+S+VPVRRGYWGR  G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAPVPKKLL MAG+EDCYTS+RGHTRT+GNFVKA ++AL  TY YL+P+LW+   F  +PYQ HTDFLAK    K
Sbjct:  125 ECEIVNYFLESSLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDSNGHIGLGVKCAKEVATAIRGAIILAKISLVPVRRGYWGRMVGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPVPKKLLGMAGIEDCYTSARGHTRTMGNFVKATFYALRATYAYLTPDLWEQHSFVPSPYQAHTDFLAKTAIKK 315
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6083.14624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI4_ECTSI8.260e-13699.49S5 DRBM domain-containing protein n=3 Tax=Eukaryot... [more]
A0A835Z6C9_9STRA1.760e-11287.1740S ribosomal protein S2 n=1 Tax=Tribonema minus T... [more]
A0A7S4UVA6_9DINO6.550e-10482.80Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A3M6TJ54_POCDA1.710e-10177.5440S ribosomal protein S2 n=3 Tax=Astrocoeniina Tax... [more]
A0A7S2BZ58_9STRA2.610e-10175.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A484DZT2_BRELC2.950e-10176.96S5 DRBM domain-containing protein n=7 Tax=Peronosp... [more]
A0A024U0H5_9STRA3.050e-10178.4940S ribosomal protein S2 n=3 Tax=Aphanomyces TaxID... [more]
A0A7R9UB19_9STRA1.470e-10078.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A067CWA9_SAPPC2.330e-10076.9640S ribosomal protein S2 n=4 Tax=Saprolegniaceae T... [more]
M4BLS4_HYAAE3.610e-10076.96S5 DRBM domain-containing protein n=19 Tax=Oomycot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6083contigL-elsbetiae_contig6083:8690..9301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.0
Seed ortholog evalue3.5e-106
Seed eggNOG ortholog2880.D7FYI4
Preferred nameRPS2
KEGG rclassRC00005,RC00482
KEGG koko:K02355,ko:K02981,ko:K07151,ko:K21668
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko03010,ko04141,ko05167,map00510,map00513,map01100,map03010,map04141,map05167
KEGG ModuleM00072,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034097,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042886,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0045903,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070181,GO:0070670,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071310,GO:0071345,GO:0071353,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097305,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1903320,GO:1903322,GO:1990904,GO:2000112
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG0877@2759
EC2.4.99.18
COG Functional cat.J
CAZyGT66
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko03012,ko03029
Exons1
Model size612
Cds size612
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.3048115-CDS-L-elsbetiae_contig6083:8689..93011622816664.3048115-CDS-L-elsbetiae_contig6083:8689..9301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6083 8690..9301 -
1691683723.2365513-CDS-L-elsbetiae_contig6083:8689..93011691683723.2365513-CDS-L-elsbetiae_contig6083:8689..9301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6083 8690..9301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6083.14624.1prot_L-elsbetiae_contig6083.14624.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6083 8690..9301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6083.14624.1

>prot_L-elsbetiae_contig6083.14624.1 ID=prot_L-elsbetiae_contig6083.14624.1|Name=mRNA_L-elsbetiae_contig6083.14624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
LLYLSFSTEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVG
DESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGLPHTVP
NKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTR
TLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKA
AEF*
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mRNA from alignment at L-elsbetiae_contig6083:8690..9301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6083.14624.1 ID=mRNA_L-elsbetiae_contig6083.14624.1|Name=mRNA_L-elsbetiae_contig6083.14624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6083:8690..9301- (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCTACCTCTCTTTTTCAACAGAGTACCAGATCGTGGATTTCTTCCT
CGGCTCCAAGCTGAAGGACGAGGTGATGAAGATCATGCCCGTCCAGAAGG
TGTCGGCCGCCGGTCAGATCACCCGCTTCAAGGCCTTCGTCGCCGTCGGA
GACGAGAGCGGCCACGTCGGGCTCGGCGTCAAGTGCGCCAAGGAGGTGGC
CACCGCCATCCGCGGCGCCATCATCATCGCCAAGATGTCGGTCGTCCCGG
TGCGCCGCGGCTACTGGGGGCGCCGCAACGGGCTCCCCCACACGGTGCCC
AACAAGGTGACCGGCAAGTGCGGCTCCGTGCGCGTGCGCCTGATTCCGGC
CCCCCGCGGGACGGGCCTCGTCGCCGCCCCCGTGCCCAAGAAGCTCCTGA
GCATGGCCGGCGTGGAGGACTGCTACACGTCGTCCCGCGGGCACACCCGC
ACCCTGGGTAACTTCGTCAAGGCCGTCTACTTCGCCTTGGCCAAGACCTA
CGGCTACCTGTCCCCCGAGCTCTGGAAGCCCACCGTCTTCCAGTCGGCCC
CGTACCAGGAGCACACCGACTTCCTGGCGAAGAACCCTGCCCCCAAGGCC
GCCGAGTTCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6083:8690..9301-

>mRNA_L-elsbetiae_contig6083.14624.1 ID=mRNA_L-elsbetiae_contig6083.14624.1|Name=mRNA_L-elsbetiae_contig6083.14624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig6083:8690..9301- (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCTACCTCTCTTTTTCAACAGAGTACCAGATCGTGGATTTCTTCCT
CGGCTCCAAGCTGAAGGACGAGGTGATGAAGATCATGCCCGTCCAGAAGG
TGTCGGCCGCCGGTCAGATCACCCGCTTCAAGGCCTTCGTCGCCGTCGGA
GACGAGAGCGGCCACGTCGGGCTCGGCGTCAAGTGCGCCAAGGAGGTGGC
CACCGCCATCCGCGGCGCCATCATCATCGCCAAGATGTCGGTCGTCCCGG
TGCGCCGCGGCTACTGGGGGCGCCGCAACGGGCTCCCCCACACGGTGCCC
AACAAGGTGACCGGCAAGTGCGGCTCCGTGCGCGTGCGCCTGATTCCGGC
CCCCCGCGGGACGGGCCTCGTCGCCGCCCCCGTGCCCAAGAAGCTCCTGA
GCATGGCCGGCGTGGAGGACTGCTACACGTCGTCCCGCGGGCACACCCGC
ACCCTGGGTAACTTCGTCAAGGCCGTCTACTTCGCCTTGGCCAAGACCTA
CGGCTACCTGTCCCCCGAGCTCTGGAAGCCCACCGTCTTCCAGTCGGCCC
CGTACCAGGAGCACACCGACTTCCTGGCGAAGAACCCTGCCCCCAAGGCC
GCCGAGTTCTAACTCCTCTACCTCTCTTTTTCAACAGAGTACCAGATCGT
GGATTTCTTCCTCGGCTCCAAGCTGAAGGACGAGGTGATGAAGATCATGC
CCGTCCAGAAGGTGTCGGCCGCCGGTCAGATCACCCGCTTCAAGGCCTTC
GTCGCCGTCGGAGACGAGAGCGGCCACGTCGGGCTCGGCGTCAAGTGCGC
CAAGGAGGTGGCCACCGCCATCCGCGGCGCCATCATCATCGCCAAGATGT
CGGTCGTCCCGGTGCGCCGCGGCTACTGGGGGCGCCGCAACGGGCTCCCC
CACACGGTGCCCAACAAGGTGACCGGCAAGTGCGGCTCCGTGCGCGTGCG
CCTGATTCCGGCCCCCCGCGGGACGGGCCTCGTCGCCGCCCCCGTGCCCA
AGAAGCTCCTGAGCATGGCCGGCGTGGAGGACTGCTACACGTCGTCCCGC
GGGCACACCCGCACCCTGGGTAACTTCGTCAAGGCCGTCTACTTCGCCTT
GGCCAAGACCTACGGCTACCTGTCCCCCGAGCTCTGGAAGCCCACCGTCT
TCCAGTCGGCCCCGTACCAGGAGCACACCGACTTCCTGGCGAAGAACCCT
GCCCCCAAGGCCGCCGAGTTCTAA
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