mRNA_L-elsbetiae_contig6080.14621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6080.14621.1
Unique NamemRNA_L-elsbetiae_contig6080.14621.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6080.14621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6080contigL-elsbetiae_contig6080:7404..9883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-15_003020.1
Exons3
Model size503
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6080.14621.1prot_L-elsbetiae_contig6080.14621.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6080 7404..9882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.9773037-CDS-L-elsbetiae_contig6080:7403..76161622816663.9773037-CDS-L-elsbetiae_contig6080:7403..7616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6080 7404..7616 +
1691683722.9848065-CDS-L-elsbetiae_contig6080:7403..76161691683722.9848065-CDS-L-elsbetiae_contig6080:7403..7616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6080 7404..7616 +
1622816663.9910662-CDS-L-elsbetiae_contig6080:9448..95711622816663.9910662-CDS-L-elsbetiae_contig6080:9448..9571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6080 9449..9571 +
1691683722.9953587-CDS-L-elsbetiae_contig6080:9448..95711691683722.9953587-CDS-L-elsbetiae_contig6080:9448..9571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6080 9449..9571 +
1622816664.001194-CDS-L-elsbetiae_contig6080:9717..98821622816664.001194-CDS-L-elsbetiae_contig6080:9717..9882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6080 9718..9882 +
1691683723.0057275-CDS-L-elsbetiae_contig6080:9717..98821691683723.0057275-CDS-L-elsbetiae_contig6080:9717..9882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6080 9718..9882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6080.14621.1

>prot_L-elsbetiae_contig6080.14621.1 ID=prot_L-elsbetiae_contig6080.14621.1|Name=mRNA_L-elsbetiae_contig6080.14621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
ASALALSHAHTQPTMLQQRRLFSSSVNERRDRRQPQASHPRTVSVWEALV
LVVLLILTCINLYTFSDRRERFQRDRGASVDTSPAPGEAHFPYSSTEADF
ALSQETRGTTLTFRRGRGGIDDLVDTSPAPGEVDFPCSLTEADFAVGQET
RGNTQAWSTSGPCVISC
back to top

mRNA from alignment at L-elsbetiae_contig6080:7404..9883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6080.14621.1 ID=mRNA_L-elsbetiae_contig6080.14621.1|Name=mRNA_L-elsbetiae_contig6080.14621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2480bp|location=Sequence derived from alignment at L-elsbetiae_contig6080:7404..9883+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCCGCGCTTGCGCTCTCTCACGCACACACACAGCCGACTATGCTGCA
GCAGCGCCGACTGTTTTCTTCGTCTGTCAACGAACGGAGGGATCGCCGGC
AGCCGCAGGCATCCCACCCCCGCACAGTATCTGTCTGGGAGGCGCTGGTC
CTTGTCGTGCTGCTTATCCTTACGTGCATCAACCTCTACACCTTTAGTGA
CCGCCGAGAAAGGGTGAGCAGTGAGAAGACACGCACTCCAGAACCTAACC
CCATGTTGGTGGCCAGCCTGTTTGACTGGTGTGCGTATTGTCTAGCCTGC
GTGGTCATTACTTTCAAGATTTGTCCTGTGGCCCTTTGCTCTCTCTAACT
TCTAGTCTAGTCTACACACAGTAACGGGTGTGCACACAAACCCACACAAA
CCGTGTACGCGTTCTCGTACAGCAGTGTGGCACCAAAAGGTAGAGGTCTG
GAGCCTTGCAGGGTGGTAACTAGCATGGCATGGCATCCATGAGGTATGCT
ATGCAACCCAGCCGATCAGAAATATTCCAGGCTTGCGAACTCGTGTGTGT
CGGGGGTAAACGGCCCGGTCTACCTCCCCGCAGTCAGCGGCGCCCCCCGC
GCCTAAACCCAGCAACATGAAACCGACATCGACAGAGGGGAGCAACTGCG
ACAGGTTATTATGCTCGTGGGTAGGCCAGCATAGGCCTATACGCTGCTGC
GCTTGGGTGCATATCTCGCGTTGTTGCTGCTGTTGCTCTGGATCCGTGGT
CGATGGGCTAAGATCCATATCTATGGATATCGTAAGGTATTATGTATGTA
GAACGCCCCCCCCGCCTTGGCGGGGCAGTGGGGCGAGAAGGTGTTTGATG
TGAAGAAAGGTTGCGGCATTCGGAAAGGTGCTAGGGGTGGGTGTGTGTCG
TCGGACGGAGTGCCGAAGGGATAGAGACTGGAAAACCCGCAGATCCCACA
CTCAGGGACGATGACTACTATTGTGTGTGAACTCGCAGCCTCTTGCGCAC
GCTGCTGGTGGCGGTAGACTTTGCACGGCAACCCGCTTCGCCGATCCCCT
CCGTGTGTGCTGCACACGTGTGTCGTTCGGTGACGATATCATGGCTTTAG
ATCAATGGGGTAAGGGTGTGCCCAGTGCGTGGTATGTTCGAGTGGTTGCA
GACGCAAATAAATCCTCGTGTAGACATGAAATGTCAGCGTTGTTGTACAT
GCCCGTTAGTCGCAAATAGGCAATGGTTGGTGCATACTCCCCCAACTACC
AACTACCACCACAAGGCGTAGTGTGAGCCTATGATCGATTGGTACAAGTT
GTCACCCACCTCTTTGCCGCTGATGGTGCTGGTTTGGCCCTTGCTTTCAT
CTCTCGTGCTGCAAAAAAACGTTTTTTGTATCCCCTCTCTAATTCCAAGT
AAACGGCAGACGAAGATTCCTGTACCTGTTATATATAGCAACATGGTATT
ATGCGGGCTTTGTACAGCAGTTTGGGCTGAACGAGAGGGGCTTCCTATGC
ATGCTGTTGCGGCGTGTCTGCCCAACATGCATGCGCCTTTTTTCAGCCCC
CCAAAAATGTTGGCGTTACATATGTACATACGTGCATACGATGCAGAGCG
GACGGGGGAGCGGTGGCGTCTTAAAAGACCTTTACGAATGCACTGAGTCT
AATACTAAATAAAGAAGAAGAAATAACGTTAAGGAGGGCCCCGCTGGCTG
GTACCTGTAAGACTAAATAAATAAGAAGAAAAGACGTCAAGGAGAGGCCC
GCTGGCTGGTACCGCGTCGCAGGAGTATTTATGTAGGAGTTTCGAGAGCG
AACGCTCTGACAGTGGATTGGACGAATGGTCAAAAGGCAAGCAAGGCTGG
ATATACTGGCCCTATTTAGATGCGGAAACCCGGCGTGTTCGTGTGTGATC
CGTCGTCCCTGAGTAAGGCCTTGAAGGACGGTCTCTCAGCCTTGTGGCGT
CATGACTCTAATTTTACAGCTGTATACACTACGGTGTGCAGCGAGAGCCA
ACCTATGCACACCTGTCCGCCGTCATTGTTCGCTTTCATTGGCAGTTCCA
ACGCGACCGAGGAGCAAGCGTCGATACCAGTCCCGCCCCTGGCGAAGCCC
ATTTCCCCTACTCGTCAACGGAAGCAGACTTCGCCCTCAGCCAAGAAACC
CGCGGCACTACGCTCACAGTAAGGCCTTGGAGGACGGTCTCAGCGTCTAT
GGCGTCATGACCAATTACTGCTGTATACTTTCACTAAATTACCGTGCAAC
GAAAGCTGACCTCTACGACGCACCCACACACGTGCCCGCTGTCCTTGTTC
GCTTCCATCGGCAGTTCCGACGCGGCCGAGGAGGAATCGACGACCTGGTC
GACACGAGTCCCGCCCCTGGCGAAGTCGATTTCCCTTGCTCGTTGACCGA
AGCAGACTTCGCCGTCGGCCAAGAAACCCGCGGCAATACGCAAGCGTGGT
CCACGAGCGGCCCGTGTGTGATATCGTGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6080:7404..9883+

>mRNA_L-elsbetiae_contig6080.14621.1 ID=mRNA_L-elsbetiae_contig6080.14621.1|Name=mRNA_L-elsbetiae_contig6080.14621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig6080:7404..9883+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCCGCGCTTGCGCTCTCTCACGCACACACACAGCCGACTATGCTGCA
GCAGCGCCGACTGTTTTCTTCGTCTGTCAACGAACGGAGGGATCGCCGGC
AGCCGCAGGCATCCCACCCCCGCACAGTATCTGTCTGGGAGGCGCTGGTC
CTTGTCGTGCTGCTTATCCTTACGTGCATCAACCTCTACACCTTTAGTGA
CCGCCGAGAAAGGGCCTCCGCGCTTGCGCTCTCTCACGCACACACACAGC
CGACTATGCTGCAGCAGCGCCGACTGTTTTCTTCGTCTGTCAACGAACGG
AGGGATCGCCGGCAGCCGCAGGCATCCCACCCCCGCACAGTATCTGTCTG
GGAGGCGCTGGTCCTTGTCGTGCTGCTTATCCTTACGTGCATCAACCTCT
ACACCTTTAGTGACCGCCGAGAAAGGTTCCAACGCGACCGAGGAGCAAGC
GTCGATACCAGTCCCGCCCCTGGCGAAGCCCATTTCCCCTACTCGTCAAC
GGAAGCAGACTTCGCCCTCAGCCAAGAAACCCGCGGCACTACGCTCACAT
TCCAACGCGACCGAGGAGCAAGCGTCGATACCAGTCCCGCCCCTGGCGAA
GCCCATTTCCCCTACTCGTCAACGGAAGCAGACTTCGCCCTCAGCCAAGA
AACCCGCGGCACTACGCTCACATTCCGACGCGGCCGAGGAGGAATCGACG
ACCTGGTCGACACGAGTCCCGCCCCTGGCGAAGTCGATTTCCCTTGCTCG
TTGACCGAAGCAGACTTCGCCGTCGGCCAAGAAACCCGCGGCAATACGCA
AGCGTGGTCCACGAGCGGCCCGTGTGTGATATCGTGCTTCCGACGCGGCC
GAGGAGGAATCGACGACCTGGTCGACACGAGTCCCGCCCCTGGCGAAGTC
GATTTCCCTTGCTCGTTGACCGAAGCAGACTTCGCCGTCGGCCAAGAAAC
CCGCGGCAATACGCAAGCGTGGTCCACGAGCGGCCCGTGTGTGATATCGT
GC
back to top