mRNA_L-elsbetiae_contig6072.14613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6072.14613.1 vs. uniprot
Match: D7FVD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD6_ECTSI) HSP 1 Score: 383 bits (983), Expect = 5.200e-116 Identity = 243/461 (52.71%), Postives = 301/461 (65.29%), Query Frame = 1 Query: 3052 TQELNLLRSTPAQQLLRVDALRAEACACRIQRLWRRIRGVKKVSQLDEDGARNKAMVGSIENGGHSVTAPEIFSRSTRVSVSGMTLEALRLRVANRQRAKERIHDGGREAVFLHSTCERLGEMKRKPKTGGTASQLSAAFCDSESERLAAAERRRERLANFKRTQDQLLHPPKLCCSDKTDLSAGHLESTTSEDSRRRHILEIVADKSWAQAEEPKQQGRAERAHVLAVAAAKARGKKSWATSLPPDVG-YDELVDIRNVVVPWPLTSVGREEKFDFADGFARRRSVHSGERGSRISNRKFDSDEASLWWYAHARMEGAHSTGPPQEVIPDGVFAELLERVKTTPIRRKEQAERGERLYQLRVARKKQIAIDKVVHRHLVANCPSLSRARRRVTAAQRSAAITIQAYIRGFLDRKRTAVLRAEMRVFGALQVLVNELRQPELEAGDNTN---SLAVILADH 4422 TQELNLL TPA+ LR+D LRAEA A IQR+WR + GA + I G TAPEI SRS + +TLEAL RVA+RQ+AKE + D + ER G M K A QL+AAF S + R +AA+RR RLANF++ QDQLL PPKL + +T +SA E + R + +++ DK+W + E+P Q+ RA+RAH LA+AAAK G K WATSLP DVG YD+L+DIR +V WP +VG DF DGF R + H+ + GS +RKFDSDEASLWWY ++ GA ++G QE DGVF ELLER KTTP RRKE AER E+ +QL VARK+QI IDK++HR VA+CPSLS ++RVT AQR AAITIQA+IRG L+RK+ ++LRAE RVFGALQVL+ ELRQPELEA D T +L VILADH Sbjct: 5 TQELNLLLKTPAEHCLRIDELRAEASARHIQRVWR---CHSQGYSCPSTGASVRDSARPIGLGKTFFTAPEISSRSDHIPTLDITLEALGRRVASRQQAKEHLRD---------TKQERSGGMTNK-MAQDRAWQLTAAFNQSHTGRCSAAKRRSTRLANFRKLQDQLLRPPKLNSTGRTSVSAKRREGSQ----RHQMVMDTAVDKNWYETEDPAQRDRAQRAHKLALAAAKDSGIKPWATSLPSDVGGYDDLLDIRRLVPAWPTHTVGGRGALDFVDGFIR--NQHTSDGGSGTGDRKFDSDEASLWWYVYS-TNGAQTSGLQQE--QDGVFVELLERAKTTPKRRKEHAERDEQQHQLMVARKRQIIIDKMIHRRKVASCPSLSCFKQRVTLAQRRAAITIQAFIRGCLERKQASLLRAEARVFGALQVLLTELRQPELEAEDTTRPLQTLGVILADH 443 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6072.14613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6072.14613.1 >prot_L-elsbetiae_contig6072.14613.1 ID=prot_L-elsbetiae_contig6072.14613.1|Name=mRNA_L-elsbetiae_contig6072.14613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1501bp MPDLKGTLNASLGRAAKLRGKQREQTAATDTSEESMAPDSPADDVGQRADback to top mRNA from alignment at L-elsbetiae_contig6072:2443..9337+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6072.14613.1 ID=mRNA_L-elsbetiae_contig6072.14613.1|Name=mRNA_L-elsbetiae_contig6072.14613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6895bp|location=Sequence derived from alignment at L-elsbetiae_contig6072:2443..9337+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6072:2443..9337+ >mRNA_L-elsbetiae_contig6072.14613.1 ID=mRNA_L-elsbetiae_contig6072.14613.1|Name=mRNA_L-elsbetiae_contig6072.14613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=9006bp|location=Sequence derived from alignment at L-elsbetiae_contig6072:2443..9337+ (Laminarionema elsbetiae ELsaHSoW15)back to top |