mRNA_L-elsbetiae_contig6071.14612.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6071.14612.1
Unique NamemRNA_L-elsbetiae_contig6071.14612.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 8.070e-32
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            MFER++SSILTRLLGEYVE STFN ESVKLGIWRG  YLVLEDMHIKK+LMDMLELPLAL HGIIGRL+IQIP
Sbjct:    1 MFERLVSSILTRLLGEYVEDSTFNTESVKLGIWRG--YLVLEDMHIKKTLMDMLELPLALRHGIIGRLQIQIP 71          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: A0A836CEC6_9STRA (Vacuolar protein sorting-associated protein 13A N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.030e-21
Identity = 42/73 (57.53%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            MFER+++SILT +LGEYVE S+F+ E+++LG+W G   LVLE+M +K S++D  +LPL L HG IGRLE++IP
Sbjct:    1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGN--LVLENMTLKASVLDPAQLPLELRHGRIGRLELKIP 71          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: A0A7S1CBN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBN4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.980e-11
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    7 ERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            E+ ++ +LT+LL +YV+   F+ + V++ +W G  Y+VL D+ +K + +D L+LPL +  G +GRLE QIP
Sbjct:    1 EKWVAPLLTKLLSDYVKEECFSPDKVEVAVWSG--YVVLNDLELKPTALDFLQLPLRVVRGYVGRLEFQIP 69          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: A0A482SWM9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWM9_9ARCH)

HSP 1 Score: 66.2 bits (160), Expect = 3.960e-11
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            MFE+ +S IL +LL ++VE      E V++G+W G   +VLE++ +K S+ ++LE+P+AL +G IGRLE+ IP
Sbjct:    1 MFEQGLSFILKKLLRDFVEDGDNLHEKVQVGVWSG--LIVLENLVLKNSIFNLLEVPVALSYGYIGRLELHIP 71          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: UPI000C6F566F (vacuolar protein sorting-associated protein 13 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI000C6F566F)

HSP 1 Score: 62.8 bits (151), Expect = 9.090e-10
Identity = 29/73 (39.73%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            +FE +++ +L ++LGEY+E   ++   +KL +W G   +VL+D+ IK+S +DML+LP+ L +G +G+L ++IP
Sbjct:    2 VFESIVTELLNKVLGEYIENLDYS--QLKLSLWGGD--VVLKDLLIKESALDMLDLPIKLDYGRLGKLVLKIP 70          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: UPI00084E59DD (vacuolar protein sorting-associated protein 13A-like n=1 Tax=Trachymyrmex zeteki TaxID=64791 RepID=UPI00084E59DD)

HSP 1 Score: 58.5 bits (140), Expect = 2.030e-9
Identity = 27/73 (36.99%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            +FE +++ +L +++GEY+E   +    +K+ +W G   LVL D+ IK+S +D+L+LP+ L +G +G+L ++IP
Sbjct:    2 VFESIVAELLNKVMGEYIENLDYT--QLKVSLWGGD--LVLNDLLIKESALDVLDLPVKLEYGRLGKLILKIP 70          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: A0A232F955_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232F955_9HYME)

HSP 1 Score: 61.6 bits (148), Expect = 2.310e-9
Identity = 28/73 (38.36%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            +FE +++ +L ++LGEY++   +  + +KL +W G   +VL+D+ IK+S +DML+LP+ L +G +G+L ++IP
Sbjct:    2 VFESIVTELLNKVLGEYIQNLDY--KQLKLSLWGGD--VVLKDLMIKESALDMLDLPIKLEYGRLGKLVLKIP 70          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: A0A7M7PW82_NASVI (Uncharacterized protein n=6 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7PW82_NASVI)

HSP 1 Score: 61.6 bits (148), Expect = 2.320e-9
Identity = 28/73 (38.36%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            +FE +++ +L ++LGEY++   +  + +KL +W G   +VL+D+ IK+S +DML+LP+ L +G +G+L ++IP
Sbjct:    2 VFESIVTELLNKVLGEYIQNLDY--KQLKLSLWGGD--VVLKDLMIKESALDMLDLPIKLEYGRLGKLVLKIP 70          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: UPI0004CD539C (vacuolar protein sorting-associated protein 13A n=1 Tax=Microplitis demolitor TaxID=69319 RepID=UPI0004CD539C)

HSP 1 Score: 61.2 bits (147), Expect = 3.170e-9
Identity = 29/73 (39.73%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            +FE +++ +L ++LGEYVE   +  + +KL +W G   +VL+D+ IK+S +D+L+LP+ L +G +G+L ++IP
Sbjct:    2 VFESIVTELLNKILGEYVENLDY--KQLKLSLWGGD--VVLKDLLIKESALDVLDLPIKLEYGRLGKLILKIP 70          
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Match: A0A835CT97_9HYME (Uncharacterized protein n=5 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A835CT97_9HYME)

HSP 1 Score: 61.2 bits (147), Expect = 3.170e-9
Identity = 28/73 (38.36%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSLMDMLELPLALGHGIIGRLEIQIP 219
            +FE +++ +L + LGEY++    +   +KL +W G   +VL D+ IK++ +DML+LP+ LG+G +G+L ++IP
Sbjct:    2 VFESIVAELLNKFLGEYIQN--LDCTQLKLSLWGGD--VVLTDLLIKENALDMLDLPIKLGYGRLGKLILKIP 70          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6071.14612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP20_ECTSI8.070e-3287.67Vacuolar protein sorting-associated protein, putat... [more]
A0A836CEC6_9STRA7.030e-2157.53Vacuolar protein sorting-associated protein 13A N-... [more]
A0A7S1CBN4_9STRA2.980e-1140.85Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482SWM9_9ARCH3.960e-1145.21Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI000C6F566F9.090e-1039.73vacuolar protein sorting-associated protein 13 n=1... [more]
UPI00084E59DD2.030e-936.99vacuolar protein sorting-associated protein 13A-li... [more]
A0A232F955_9HYME2.310e-938.36Uncharacterized protein (Fragment) n=1 Tax=Trichom... [more]
A0A7M7PW82_NASVI2.320e-938.36Uncharacterized protein n=6 Tax=Nasonia vitripenni... [more]
UPI0004CD539C3.170e-939.73vacuolar protein sorting-associated protein 13A n=... [more]
A0A835CT97_9HYME3.170e-938.36Uncharacterized protein n=5 Tax=Aphidius gifuensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6071contigL-elsbetiae_contig6071:1475..2669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue4.4e-27
Seed eggNOG ortholog2880.D8LP20
KEGG koko:K19525
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.0360384-CDS-L-elsbetiae_contig6071:1474..15831622816663.0360384-CDS-L-elsbetiae_contig6071:1474..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6071 1475..1583 +
1691683722.2759035-CDS-L-elsbetiae_contig6071:1474..15831691683722.2759035-CDS-L-elsbetiae_contig6071:1474..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6071 1475..1583 +
1622816663.0476482-CDS-L-elsbetiae_contig6071:2559..26691622816663.0476482-CDS-L-elsbetiae_contig6071:2559..2669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6071 2560..2669 +
1691683722.291402-CDS-L-elsbetiae_contig6071:2559..26691691683722.291402-CDS-L-elsbetiae_contig6071:2559..2669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6071 2560..2669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6071.14612.1prot_L-elsbetiae_contig6071.14612.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6071 1475..2669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6071.14612.1

>prot_L-elsbetiae_contig6071.14612.1 ID=prot_L-elsbetiae_contig6071.14612.1|Name=mRNA_L-elsbetiae_contig6071.14612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MFERVISSILTRLLGEYVEGSTFNAESVKLGIWRGGCYLVLEDMHIKKSL
MDMLELPLALGHGIIGRLEIQIP
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mRNA from alignment at L-elsbetiae_contig6071:1475..2669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6071.14612.1 ID=mRNA_L-elsbetiae_contig6071.14612.1|Name=mRNA_L-elsbetiae_contig6071.14612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1195bp|location=Sequence derived from alignment at L-elsbetiae_contig6071:1475..2669+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGAGCGCGTCATCTCTTCTATTCTCACCAGGCTGCTGGGGGAATA TGTTGAGGGCTCCACCTTCAATGCCGAGAGTGTTAAGCTTGGAATATGGA GAGGTGGGTGTAGTGCTCGTGTATTGTATGCGTTCAGAGCTCCTGGCGAT ACGGAGGACTATGTACCCGGCAAAGCTCGCACAAAGAGCAGATGGGGGTA AGTAGCCTGTCTGCTCTTGTGATGCACGTTTCCGCCAACATTCTGTTGGT CGGTTCTTGCTGCGCTTTGGAATGGCCTTGCTTCCACCGCGTTGGGGTTT TGGGTTTTGAGAGTTTGCGCAAGTTGATGTTGGTGGGTGCGTATTGTTTC CAGCGTTCAAAACTACGACGTCACTTGTACACAAATGTAGGAGAAGCCCG CTGTCGCTGGCACGGGCCGACCGACGATTGGGACACTTACCCAGTTTTTC AGAACTGGTAAGTCGACGCTGAGCTTATCTCGCAACTTTGAACTTTTCAA ATGCCAACTTTCCGCTGTCCAAATCCAAATATGTACCATATGCAGAATTT CCGATGTTGCGACCACCGAGGTTTTGAGAAAACTAAACTCTGTTCGGAAG AGAATGGCAGTATTACGTTGTTGACAGCAAGTGCAACGACTGCAGCGGTG TTAGGTACTTTCCTCCTAGAGTTTTGGCGTGTGGTTCCGGCTGCACCCCG AATATTTCATATTTTTTTGCAGGCAACCGATGTGTGCCGAAACAGAGTCT ATTTTGCTACACAGCAGTTGGCGGCGTTGGTTTCCCAGCTGCGTTGCCGT CGGAGACCAACTGAGAGCCGTTCCGGAACTGCCTGCGAGCGCTGTATTTT GCGGCTTTCCCCGGCGGTTGTCACACGCGTATTTTTATGATACAAACAAA CACGCAGCAGGCAAAACGGAAGACACAGCAGCAGTAGTAGTAGCGGTGCG CAGCCAAAAGTCGAGGCCTGCCGTTTCATGTTCGTTTCAAAGTTAACAGG GGGGGTGGTTTGTGCAGCACTTCATTTTCGTCTGACGTGTTGCTGATGCT GCTGCCGTCGTTTCGGTCGGGGGGGGGGAGAGAAGGCTACCTTGTGCTGG AGGATATGCACATCAAGAAGAGCCTCATGGACATGCTGGAGCTCCCCTTG GCACTGGGGCACGGCATCATCGGCCGCCTGGAGATACAGATACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6071:1475..2669+

>mRNA_L-elsbetiae_contig6071.14612.1 ID=mRNA_L-elsbetiae_contig6071.14612.1|Name=mRNA_L-elsbetiae_contig6071.14612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig6071:1475..2669+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGAGCGCGTCATCTCTTCTATTCTCACCAGGCTGCTGGGGGAATA
TGTTGAGGGCTCCACCTTCAATGCCGAGAGTGTTAAGCTTGGAATATGGA
GAGGTGGGTATGTTCGAGCGCGTCATCTCTTCTATTCTCACCAGGCTGCT
GGGGGAATATGTTGAGGGCTCCACCTTCAATGCCGAGAGTGTTAAGCTTG
GAATATGGAGAGGTGGGTGCTACCTTGTGCTGGAGGATATGCACATCAAG
AAGAGCCTCATGGACATGCTGGAGCTCCCCTTGGCACTGGGGCACGGCAT
CATCGGCCGCCTGGAGATACAGATACCCGCTACCTTGTGCTGGAGGATAT
GCACATCAAGAAGAGCCTCATGGACATGCTGGAGCTCCCCTTGGCACTGG
GGCACGGCATCATCGGCCGCCTGGAGATACAGATACCC
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