mRNA_L-elsbetiae_contig607.14610.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig607.14610.1
Unique NamemRNA_L-elsbetiae_contig607.14610.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig607.14610.1 vs. uniprot
Match: A0A6H5LAT3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT3_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.380e-10
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = -3 
Query:  572 TGLEGYDSFGDLVRLLWAQDPNARPALQDVARLLRVPE 685
            T LE YD+FGDLVRLLWAQDP ARPALQDVARLLRVP+
Sbjct: 1020 TALEDYDNFGDLVRLLWAQDPTARPALQDVARLLRVPD 1057
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BLAST of mRNA_L-elsbetiae_contig607.14610.1 vs. uniprot
Match: D7FXM4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.850e-10
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = -3 
Query:  572 TGLEGYDSFGDLVRLLWAQDPNARPALQDVARLLRVPE 685
            T LE Y++FGDLVRLLWAQDP ARPALQDVARLLRVPE
Sbjct: 1057 TALEDYENFGDLVRLLWAQDPTARPALQDVARLLRVPE 1094
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig607.14610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAT3_9PHAE1.380e-1086.84Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FXM4_ECTSI1.850e-1086.84Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig607contigL-elsbetiae_contig607:26717..27409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size693
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.9094422-CDS-L-elsbetiae_contig607:26716..274091622816662.9094422-CDS-L-elsbetiae_contig607:26716..27409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig607 26717..27409 +
1691683722.1780882-CDS-L-elsbetiae_contig607:26716..274091691683722.1780882-CDS-L-elsbetiae_contig607:26716..27409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig607 26717..27409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig607.14610.1prot_L-elsbetiae_contig607.14610.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig607 26717..27409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig607.14610.1

>prot_L-elsbetiae_contig607.14610.1 ID=prot_L-elsbetiae_contig607.14610.1|Name=mRNA_L-elsbetiae_contig607.14610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
MGHRALLPYRSQQPRARSHLSVLPPKPLLPPSSPPPQSACRRCFHHSRCL
RRRRAKAVVPRSGPRSPLLRHHHPPFQPLRQRQSCCLRCSLVEAPFPWLG
PRRPLLRHRHPPFQPLRPRQSCCLHCCLVEAPIPRSCPRRRLLRHHQPPF
QPLLPPALYHGCPLLLPLLLPHRERQPRQPPPPPPVACCAARARGGAARR
PAAQAGRSGPAPTGGARGRRSCRTLPGRSLR
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mRNA from alignment at L-elsbetiae_contig607:26717..27409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig607.14610.1 ID=mRNA_L-elsbetiae_contig607.14610.1|Name=mRNA_L-elsbetiae_contig607.14610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=693bp|location=Sequence derived from alignment at L-elsbetiae_contig607:26717..27409+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCACCGGGCCCTTCTTCCGTACCGATCGCAGCAGCCGCGGGCTCG
CTCTCATCTGAGTGTTCTTCCGCCCAAGCCTCTGCTTCCGCCTTCGTCTC
CCCCTCCCCAGTCTGCCTGTCGTCGCTGCTTTCACCACTCGCGCTGCCTT
CGCCGCCGTCGAGCAAAAGCCGTAGTCCCTCGCTCGGGTCCGAGATCGCC
ACTTCTCCGTCATCACCACCCCCCGTTCCAACCTCTTCGCCAACGTCAAT
CGTGCTGCCTTCGCTGCAGTCTAGTAGAGGCTCCGTTCCCTTGGTTGGGC
CCGAGACGGCCACTTCTCCGTCATCGCCATCCCCCGTTCCAACCTCTTCG
CCCACGTCAATCGTGCTGCCTTCACTGCTGTCTAGTAGAGGCTCCAATCC
CTCGGTCGTGTCCAAGACGGCGGCTTCTTCGCCATCATCAGCCCCCGTTC
CAACCTCTTCTTCCTCCGGCGCTTTATCATGGCTGTCCGCTACTGCTGCC
GCTGCTGCTGCCGCACCGGGAACGTCAGCCGCGCCAGCCGCCGCCGCCGC
CGCCTGTCGCCTGCTGCGCGGCTCGGGCACGCGGAGGAGCCGCGCGACGT
CCTGCAGCGCAGGCCGGGCGTTCGGGTCCTGCGCCCACAGGAGGCGCACG
AGGTCGCCGAAGCTGTCGTACCCTTCCAGGCCGGTCGCTTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig607:26717..27409+

>mRNA_L-elsbetiae_contig607.14610.1 ID=mRNA_L-elsbetiae_contig607.14610.1|Name=mRNA_L-elsbetiae_contig607.14610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig607:26717..27409+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCACCGGGCCCTTCTTCCGTACCGATCGCAGCAGCCGCGGGCTCG
CTCTCATCTGAGTGTTCTTCCGCCCAAGCCTCTGCTTCCGCCTTCGTCTC
CCCCTCCCCAGTCTGCCTGTCGTCGCTGCTTTCACCACTCGCGCTGCCTT
CGCCGCCGTCGAGCAAAAGCCGTAGTCCCTCGCTCGGGTCCGAGATCGCC
ACTTCTCCGTCATCACCACCCCCCGTTCCAACCTCTTCGCCAACGTCAAT
CGTGCTGCCTTCGCTGCAGTCTAGTAGAGGCTCCGTTCCCTTGGTTGGGC
CCGAGACGGCCACTTCTCCGTCATCGCCATCCCCCGTTCCAACCTCTTCG
CCCACGTCAATCGTGCTGCCTTCACTGCTGTCTAGTAGAGGCTCCAATCC
CTCGGTCGTGTCCAAGACGGCGGCTTCTTCGCCATCATCAGCCCCCGTTC
CAACCTCTTCTTCCTCCGGCGCTTTATCATGGCTGTCCGCTACTGCTGCC
GCTGCTGCTGCCGCACCGGGAACGTCAGCCGCGCCAGCCGCCGCCGCCGC
CGCCTGTCGCCTGCTGCGCGGCTCGGGCACGCGGAGGAGCCGCGCGACGT
CCTGCAGCGCAGGCCGGGCGTTCGGGTCCTGCGCCCACAGGAGGCGCACG
AGGTCGCCGAAGCTGTCGTACCCTTCCAGGCCGGTCGCTTCGAATGGGGC
ACCGGGCCCTTCTTCCGTACCGATCGCAGCAGCCGCGGGCTCGCTCTCAT
CTGAGTGTTCTTCCGCCCAAGCCTCTGCTTCCGCCTTCGTCTCCCCCTCC
CCAGTCTGCCTGTCGTCGCTGCTTTCACCACTCGCGCTGCCTTCGCCGCC
GTCGAGCAAAAGCCGTAGTCCCTCGCTCGGGTCCGAGATCGCCACTTCTC
CGTCATCACCACCCCCCGTTCCAACCTCTTCGCCAACGTCAATCGTGCTG
CCTTCGCTGCAGTCTAGTAGAGGCTCCGTTCCCTTGGTTGGGCCCGAGAC
GGCCACTTCTCCGTCATCGCCATCCCCCGTTCCAACCTCTTCGCCCACGT
CAATCGTGCTGCCTTCACTGCTGTCTAGTAGAGGCTCCAATCCCTCGGTC
GTGTCCAAGACGGCGGCTTCTTCGCCATCATCAGCCCCCGTTCCAACCTC
TTCTTCCTCCGGCGCTTTATCATGGCTGTCCGCTACTGCTGCCGCTGCTG
CTGCCGCACCGGGAACGTCAGCCGCGCCAGCCGCCGCCGCCGCCGCCTGT
CGCCTGCTGCGCGGCTCGGGCACGCGGAGGAGCCGCGCGACGTCCTGCAG
CGCAGGCCGGGCGTTCGGGTCCTGCGCCCACAGGAGGCGCACGAGGTCGC
CGAAGCTGTCGTACCCTTCCAGGCCGGTCGCTTCGA
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