mRNA_L-elsbetiae_contig6069.14609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6069.14609.1
Unique NamemRNA_L-elsbetiae_contig6069.14609.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6069.14609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6069contigL-elsbetiae_contig6069:10442..10767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.6606622-UTR-L-elsbetiae_contig6069:10441..104641622816662.6606622-UTR-L-elsbetiae_contig6069:10441..10464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6069 10442..10464 +
1691683721.9678442-UTR-L-elsbetiae_contig6069:10441..104641691683721.9678442-UTR-L-elsbetiae_contig6069:10441..10464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6069 10442..10464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.6748073-CDS-L-elsbetiae_contig6069:10464..107671622816662.6748073-CDS-L-elsbetiae_contig6069:10464..10767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6069 10465..10767 +
1691683721.982468-CDS-L-elsbetiae_contig6069:10464..107671691683721.982468-CDS-L-elsbetiae_contig6069:10464..10767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6069 10465..10767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6069.14609.1prot_L-elsbetiae_contig6069.14609.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6069 10465..10767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6069.14609.1

>prot_L-elsbetiae_contig6069.14609.1 ID=prot_L-elsbetiae_contig6069.14609.1|Name=mRNA_L-elsbetiae_contig6069.14609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MPMIEGRERLEIAEYGAADSAGGGSTLKKGPVVDTCEWYTLHKGAFGVVL
PRDCVYPRNDRAGSQERSFHCATPPQEVHEYSVHSQSSKPIFPVIISSPE
T
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mRNA from alignment at L-elsbetiae_contig6069:10442..10767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6069.14609.1 ID=mRNA_L-elsbetiae_contig6069.14609.1|Name=mRNA_L-elsbetiae_contig6069.14609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=326bp|location=Sequence derived from alignment at L-elsbetiae_contig6069:10442..10767+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGGCGTCGCAAGGCACATACATGCCCATGATCGAGGGGCGTGAAAGG
CTCGAAATTGCAGAATATGGTGCTGCGGACAGCGCCGGCGGCGGTTCCAC
CCTGAAAAAGGGGCCGGTTGTAGATACATGCGAGTGGTACACACTACATA
AGGGCGCATTCGGAGTCGTTCTGCCACGGGATTGTGTGTATCCGAGAAAC
GATCGCGCGGGCTCTCAAGAGCGTTCGTTTCATTGCGCAACTCCGCCCCA
GGAGGTACATGAATACTCAGTGCACAGTCAAAGTTCAAAGCCGATTTTTC
CCGTCATCATTTCATCGCCAGAAACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6069:10442..10767+

>mRNA_L-elsbetiae_contig6069.14609.1 ID=mRNA_L-elsbetiae_contig6069.14609.1|Name=mRNA_L-elsbetiae_contig6069.14609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig6069:10442..10767+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCATGATCGAGGGGCGTGAAAGGCTCGAAATTGCAGAATATGGTGC
TGCGGACAGCGCCGGCGGCGGTTCCACCCTGAAAAAGGGGCCGGTTGTAG
ATACATGCGAGTGGTACACACTACATAAGGGCGCATTCGGAGTCGTTCTG
CCACGGGATTGTGTGTATCCGAGAAACGATCGCGCGGGCTCTCAAGAGCG
TTCGTTTCATTGCGCAACTCCGCCCCAGGAGGTACATGAATACTCAGTGC
ACAGTCAAAGTTCAAAGCCGATTTTTCCCGTCATCATTTCATCGCCAGAA
ACTATGCCCATGATCGAGGGGCGTGAAAGGCTCGAAATTGCAGAATATGG
TGCTGCGGACAGCGCCGGCGGCGGTTCCACCCTGAAAAAGGGGCCGGTTG
TAGATACATGCGAGTGGTACACACTACATAAGGGCGCATTCGGAGTCGTT
CTGCCACGGGATTGTGTGTATCCGAGAAACGATCGCGCGGGCTCTCAAGA
GCGTTCGTTTCATTGCGCAACTCCGCCCCAGGAGGTACATGAATACTCAG
TGCACAGTCAAAGTTCAAAGCCGATTTTTCCCGTCATCATTTCATCGCCA
GAAACT
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