mRNA_L-elsbetiae_contig6054.14592.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6054.14592.1
Unique NamemRNA_L-elsbetiae_contig6054.14592.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6054.14592.1 vs. uniprot
Match: A0A6H5JTI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.030e-26
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 1 
Query: 1162 YSSIRVLTPTDGDVLVLDSDFEVTWAVDDGDGSNST-LFHVDLYDCGDDQSCLGANGSVCGA--GEFVV-GLCPEEGCYSTVSTAS----ISLPEVDD-VGPYFKVAVSPDDGSSATGCSSGVFTTTAAA 1524
            +SSI+VL P+DG+VL+ +S +EVTWAVD  +GS+S  +FHVDL+DCGD+Q+C   +G   G   GE +V  LCPEEGCYS          ++LP+VDD +GPYFK+AVSPDDGS+  GCS G FT  AAA
Sbjct:  152 FSSIQVLRPSDGEVLISESSYEVTWAVDGEEGSSSPDVFHVDLHDCGDNQACGSGSGXXDGGCVGEGLVQALCPEEGCYSDGGGGGGVTWVTLPKVDDGLGPYFKIAVSPDDGSNDPGCS-GSFTIEAAA 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6054.14592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTI4_9PHAE2.030e-2656.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6054contigL-elsbetiae_contig6054:7428..9918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_002170.1
Exons4
Model size1524
Cds size1287
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6054.14592.1prot_L-elsbetiae_contig6054.14592.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6054 7665..9918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.95179-UTR-L-elsbetiae_contig6054:7427..76641622816660.95179-UTR-L-elsbetiae_contig6054:7427..7664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6054 7428..7664 +
1691683720.6318047-UTR-L-elsbetiae_contig6054:7427..76641691683720.6318047-UTR-L-elsbetiae_contig6054:7427..7664Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6054 7428..7664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.969287-CDS-L-elsbetiae_contig6054:7664..81161622816660.969287-CDS-L-elsbetiae_contig6054:7664..8116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 7665..8116 +
1691683720.6429954-CDS-L-elsbetiae_contig6054:7664..81161691683720.6429954-CDS-L-elsbetiae_contig6054:7664..8116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 7665..8116 +
1622816660.9850893-CDS-L-elsbetiae_contig6054:8260..87981622816660.9850893-CDS-L-elsbetiae_contig6054:8260..8798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 8261..8798 +
1691683720.6541705-CDS-L-elsbetiae_contig6054:8260..87981691683720.6541705-CDS-L-elsbetiae_contig6054:8260..8798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 8261..8798 +
1622816660.9993763-CDS-L-elsbetiae_contig6054:9280..94751622816660.9993763-CDS-L-elsbetiae_contig6054:9280..9475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 9281..9475 +
1691683720.664873-CDS-L-elsbetiae_contig6054:9280..94751691683720.664873-CDS-L-elsbetiae_contig6054:9280..9475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 9281..9475 +
1622816661.0126495-CDS-L-elsbetiae_contig6054:9816..99181622816661.0126495-CDS-L-elsbetiae_contig6054:9816..9918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 9817..9918 +
1691683720.68079-CDS-L-elsbetiae_contig6054:9816..99181691683720.68079-CDS-L-elsbetiae_contig6054:9816..9918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6054 9817..9918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6054.14592.1

>prot_L-elsbetiae_contig6054.14592.1 ID=prot_L-elsbetiae_contig6054.14592.1|Name=mRNA_L-elsbetiae_contig6054.14592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=429bp
MKHPRPLGLAVVCALSVGAAAAQADDAAPRWRWERNRSAGAERLAETAGV
LPRGQQRQRQRESHRERTGEPNHNVRRLVKETATATPTPAHSGATVAPTA
ISTAVAVATASASTSATVTHYSASSSATATFTTTDVGGETEIDSEQGGED
SNEDQAARDNEVESGDTDGEDEDDDTTHGDDDGSESEGGGKSDDGDDGGD
DDGDDGAGDGGDDNGDGRPVDVDDGDDDPGSEGDERVDDDDGGEAGDDGD
GGGGGGDGGDREEDEKKPEDDGGGGDGGDGDEGEEELEEEKKFEEEEELE
ERESHEIRYSSIRVLTPTDGDVLVLDSDFEVTWAVDDGDGSNSTLFHVDL
YDCGDDQSCLGANGSVCGAGEFVVGLCPEEGCYSTVSTASISLPEVDDVG
PYFKVAVSPDDGSSATGCSSGVFTTTAAA
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mRNA from alignment at L-elsbetiae_contig6054:7428..9918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6054.14592.1 ID=mRNA_L-elsbetiae_contig6054.14592.1|Name=mRNA_L-elsbetiae_contig6054.14592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2491bp|location=Sequence derived from alignment at L-elsbetiae_contig6054:7428..9918+ (Laminarionema elsbetiae ELsaHSoW15)
CGACCCTCGAGAGCGAGAGCCAGCAAAGACCACCGACGAGACGACGTGCG
GAGTACGACGTGCATTGGTACAAGTGGGAGACGTATCGTGTCACGGGGTA
CGTGTGTTTTTGTAGACCGCTCGCTCGCACGAACGAGAACGTGAAACCGA
GCCGTTTCTCTGCGTTTCCGTCGACAAGATTTTGAAGTCAGGGACTCCGG
GACACTCGTGTCTTGACCCGAGATAGAGCGCGCGCGAATGAAGCATCCAC
GACCTCTGGGCTTGGCAGTGGTGTGCGCGCTCTCAGTAGGTGCAGCCGCC
GCTCAGGCCGACGATGCTGCCCCGCGGTGGCGGTGGGAACGCAATCGTTC
GGCCGGAGCAGAACGTTTGGCAGAAACGGCCGGGGTCTTGCCACGAGGCC
AACAACGGCAGCGGCAGCGGGAAAGCCACAGGGAGCGCACGGGAGAGCCA
AATCACAACGTACGCCGGCTTGTGAAGGAAACGGCAACGGCAACACCAAC
GCCAGCCCATAGTGGAGCTACCGTGGCACCAACGGCCATATCCACCGCAG
TCGCCGTGGCGACCGCGTCTGCCTCGACTTCGGCCACGGTAACGCATTAC
TCCGCAAGTTCGTCGGCAACTGCCACATTCACCACTACGGACGTCGGCGG
CGAGACAGAAATCGACAGTGAGCAAGGGGGAGAGGATTCGTCGTCGAGCG
GCAGCAACAGTCAAGATCAGGCGGCAAGCGACGACGATGTCGAGAGTGGT
GACACGGACGTCGATGACGAGACAGAGACGGACAGTGAGCAAGGGGGAGA
GGAGTCGTCGCCGAGCAGCAGCAGCAGAAGCAGCAACGAAGATCAGGCGG
CAAGAGACAACGAGGTCGAGAGCGGTGACACTGACGGCGAGGACGAGGAC
GATGACACCACCCACGGGGACGATGATGGTTCGGAGTCTGAGGGGGGGGG
GAAGAGTGACGACGGCGATGACGGCGGCGACGATGATGGTGATGATGGCG
CTGGCGACGGTGGTGACGACAACGGAGACGGGCGCCCGGTCGACGTGGAC
GATGGTGATGATGATCCGGGGTCTGAGGGGGACGAGAGAGTTGACGATGA
TGATGGCGGCGAGGCTGGCGATGATGGTGATGGTGGTGGTGGTGGTGGTG
ACGGTGGTGACCGCGAAGAAGACGAGAAGAAGCCCGAGGACGATGGTGGT
GGTGGTGACGGTGGTGACGGCGACGAAGGCGAGGAGGAGCTCGAAGAAGA
GAAGAAGTTCGAGGAGGAGGAGGAGCTCGAGGAACGCGAGTCGCACGAGA
TACGTTACTCGTCGATCCGAGTGTTGACGCCGACCGACGGGGACGTGCTC
GTTCTTGACAGCGACTTCGAGGTGAGCTGAGCAAAGATTGCGTTGTTCCG
TGCTGTGTCGTGGACCAGATCATAGATATCACACGAAAAAAAACATCCAG
GATAGATATAGGCTTACATATGTAGGCTAGAAATAAATAGAGCAAGATAT
GTATCTATTTCTATGTACGTAGGCTTCAATTCAAGTGTGGGTCGTTTTCT
CGTGGGACTGTTATATTTCTGTCCTCATTTCCTGCTCCCGCTGGCCGGCC
CTGTGCGGTCTGCTTTGTTTATTTTCCGCAGTCGCACTTCGCGAGAGTTG
TTCGCGATTAGAAGAAAAAAAAACGGCGATATCTTCCACGTACTTGAGAG
GCCAGCCCTTCCAGCAGGCGTTGTTTGGTTGTGTCGGTGGTGCAAACAAA
AAAAAATCCGTCGCAAGCAAATATGTTGTACCTCCTCAAATGGCTTACAA
TACCTATGCCCTCTTTTCTGCGTCCCTCCCTTCCACTTGACACCGGGGAC
AAGGTAACGTGGGCGGTTGATGACGGGGACGGGAGCAACTCTACGCTGTT
CCACGTGGACCTGTACGACTGCGGGGACGATCAGTCCTGCCTCGGAGCCA
ACGGTAGCGTCTGTGGGGCGGGAGAGTTTGTCGTGGGGCTTTGCCCTGAG
GAAGGATGCTACTCCACCGTCAGCACGGCCTCGATTTCTTTGCCAGAGGT
GCGTTTTTTCTCGGGGGATGTGACGCAGGGGATACAGAGTGCAGTAGGGA
GAGGGATGGGGGGTGCATGGGAGTGTGTGTGGCCACCGTGCCTGCCGCAC
ACGGTAAAAAAGAAAGTCCCCGCTCCTCCTTGTCTTTCGGTGGCTTCCGA
CAACGACGACGATATGACTACTTCATTCATGAATGAAGCGACGGCACCTG
TTTGCTCGCTTTTATTTTACATCACCATATGTGCCTTCGATACCCAAAAA
TGTGTCAACTATTCAATGCAAATCACTGATTCTGTTCTGATTCCCCGTCA
TTCTCCTCGCTTGCTTGATTTGCGTTGCACGTGCGAAAGGTGGATGATGT
TGGACCTTACTTCAAGGTTGCCGTCTCTCCCGACGACGGAAGCTCCGCCA
CGGGATGCAGCAGCGGAGTGTTCACGACGACAGCAGCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6054:7428..9918+

>mRNA_L-elsbetiae_contig6054.14592.1 ID=mRNA_L-elsbetiae_contig6054.14592.1|Name=mRNA_L-elsbetiae_contig6054.14592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2574bp|location=Sequence derived from alignment at L-elsbetiae_contig6054:7428..9918+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCATCCACGACCTCTGGGCTTGGCAGTGGTGTGCGCGCTCTCAGT
AGGTGCAGCCGCCGCTCAGGCCGACGATGCTGCCCCGCGGTGGCGGTGGG
AACGCAATCGTTCGGCCGGAGCAGAACGTTTGGCAGAAACGGCCGGGGTC
TTGCCACGAGGCCAACAACGGCAGCGGCAGCGGGAAAGCCACAGGGAGCG
CACGGGAGAGCCAAATCACAACGTACGCCGGCTTGTGAAGGAAACGGCAA
CGGCAACACCAACGCCAGCCCATAGTGGAGCTACCGTGGCACCAACGGCC
ATATCCACCGCAGTCGCCGTGGCGACCGCGTCTGCCTCGACTTCGGCCAC
GGTAACGCATTACTCCGCAAGTTCGTCGGCAACTGCCACATTCACCACTA
CGGACGTCGGCGGCGAGACAGAAATCGACAGTGAGCAAGGGGGAGAGGAT
TCATGAAGCATCCACGACCTCTGGGCTTGGCAGTGGTGTGCGCGCTCTCA
GTAGGTGCAGCCGCCGCTCAGGCCGACGATGCTGCCCCGCGGTGGCGGTG
GGAACGCAATCGTTCGGCCGGAGCAGAACGTTTGGCAGAAACGGCCGGGG
TCTTGCCACGAGGCCAACAACGGCAGCGGCAGCGGGAAAGCCACAGGGAG
CGCACGGGAGAGCCAAATCACAACGTACGCCGGCTTGTGAAGGAAACGGC
AACGGCAACACCAACGCCAGCCCATAGTGGAGCTACCGTGGCACCAACGG
CCATATCCACCGCAGTCGCCGTGGCGACCGCGTCTGCCTCGACTTCGGCC
ACGGTAACGCATTACTCCGCAAGTTCGTCGGCAACTGCCACATTCACCAC
TACGGACGTCGGCGGCGAGACAGAAATCGACAGTGAGCAAGGGGGAGAGG
ATTCCAACGAAGATCAGGCGGCAAGAGACAACGAGGTCGAGAGCGGTGAC
ACTGACGGCGAGGACGAGGACGATGACACCACCCACGGGGACGATGATGG
TTCGGAGTCTGAGGGGGGGGGGAAGAGTGACGACGGCGATGACGGCGGCG
ACGATGATGGTGATGATGGCGCTGGCGACGGTGGTGACGACAACGGAGAC
GGGCGCCCGGTCGACGTGGACGATGGTGATGATGATCCGGGGTCTGAGGG
GGACGAGAGAGTTGACGATGATGATGGCGGCGAGGCTGGCGATGATGGTG
ATGGTGGTGGTGGTGGTGGTGACGGTGGTGACCGCGAAGAAGACGAGAAG
AAGCCCGAGGACGATGGTGGTGGTGGTGACGGTGGTGACGGCGACGAAGG
CGAGGAGGAGCTCGAAGAAGAGAAGAAGTTCGAGGAGGAGGAGGAGCTCG
AGGAACGCGAGTCGCACGAGATACGTTACTCGTCGATCCGAGTGTTGACG
CCGACCGACGGGGACGTGCTCGTTCTTGACAGCGACTTCGAGCAACGAAG
ATCAGGCGGCAAGAGACAACGAGGTCGAGAGCGGTGACACTGACGGCGAG
GACGAGGACGATGACACCACCCACGGGGACGATGATGGTTCGGAGTCTGA
GGGGGGGGGGAAGAGTGACGACGGCGATGACGGCGGCGACGATGATGGTG
ATGATGGCGCTGGCGACGGTGGTGACGACAACGGAGACGGGCGCCCGGTC
GACGTGGACGATGGTGATGATGATCCGGGGTCTGAGGGGGACGAGAGAGT
TGACGATGATGATGGCGGCGAGGCTGGCGATGATGGTGATGGTGGTGGTG
GTGGTGGTGACGGTGGTGACCGCGAAGAAGACGAGAAGAAGCCCGAGGAC
GATGGTGGTGGTGGTGACGGTGGTGACGGCGACGAAGGCGAGGAGGAGCT
CGAAGAAGAGAAGAAGTTCGAGGAGGAGGAGGAGCTCGAGGAACGCGAGT
CGCACGAGATACGTTACTCGTCGATCCGAGTGTTGACGCCGACCGACGGG
GACGTGCTCGTTCTTGACAGCGACTTCGAGGTAACGTGGGCGGTTGATGA
CGGGGACGGGAGCAACTCTACGCTGTTCCACGTGGACCTGTACGACTGCG
GGGACGATCAGTCCTGCCTCGGAGCCAACGGTAGCGTCTGTGGGGCGGGA
GAGTTTGTCGTGGGGCTTTGCCCTGAGGAAGGATGCTACTCCACCGTCAG
CACGGCCTCGATTTCTTTGCCAGAGGTAACGTGGGCGGTTGATGACGGGG
ACGGGAGCAACTCTACGCTGTTCCACGTGGACCTGTACGACTGCGGGGAC
GATCAGTCCTGCCTCGGAGCCAACGGTAGCGTCTGTGGGGCGGGAGAGTT
TGTCGTGGGGCTTTGCCCTGAGGAAGGATGCTACTCCACCGTCAGCACGG
CCTCGATTTCTTTGCCAGAGGTGGATGATGTTGGACCTTACTTCAAGGTT
GCCGTCTCTCCCGACGACGGAAGCTCCGCCACGGGATGCAGCAGCGGAGT
GTTCACGACGACAGCAGCAGCAGTGGATGATGTTGGACCTTACTTCAAGG
TTGCCGTCTCTCCCGACGACGGAAGCTCCGCCACGGGATGCAGCAGCGGA
GTGTTCACGACGACAGCAGCAGCA
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