mRNA_L-elsbetiae_contig6048.14588.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6048.14588.1
Unique NamemRNA_L-elsbetiae_contig6048.14588.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.010e-9
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:  369 DPSPVCSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCG-EYDAPCVI 572
            +P+ VCS+G PG++S   +CC+ ECG CGGSGCA++     L    CCEG I E    C  + +APCV+
Sbjct:   30 EPTDVCSNGIPGVQS-GVSCCLAECGGCGGSGCAELGG--GLGEHNCCEGEIEEFGELCSIKLEAPCVV 95
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.830e-8
Identity = 34/65 (52.31%), Postives = 38/65 (58.46%), Query Frame = 3 
Query:  381 VCSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCG-EYDAPCVI 572
            VCSDG PGI S N ACC+ ECG CGGSGC +      L    CCEG I E    C    +APCV+
Sbjct:  810 VCSDGIPGIRSGN-ACCLAECGACGGSGCDEFGG--GLGADNCCEGNIEEHGELCSITLEAPCVV 871
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 5.260e-7
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 3 
Query:  381 VCSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCG-EYDAPCVI 572
            VCS+G PGI+S N ACC+ ECG CGGSGCA++     L    CC+  I +    C     APCV+
Sbjct: 2548 VCSNGIPGIQSGN-ACCLAECGACGGSGCAELGG--GLGEHNCCQSEIEDFGELCSLSLAAPCVV 2609
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.510e-6
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 3 
Query:  384 CSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCGEYD-APCVI 572
            CS+G PGIE  +GACCV +CG CGGSGC+    +  L+  +CC   IL+   PC     APC +
Sbjct:   21 CSNGFPGIEK-SGACCVSDCGTCGGSGCSSR--ESGLTGDDCCTKNILKQGAPCSATGHAPCFL 81
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.530e-6
Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 3 
Query:  381 VCSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCG-EYDAPCVI 572
            VCS+G PGI+S    CC+ ECG+CGG GCA+      L    CC+G I E    C     APC++
Sbjct:  729 VCSNGIPGIQSGI-TCCLAECGECGGPGCAEFGG--GLGQDNCCQGRIEEYGELCSVTLAAPCIV 790
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 9.810e-6
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 3 
Query:  384 CSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCG-EYDAPCVIP 575
            CS+G PG +    ACC++ CG CGG GC  +      S  +CC   I+ +   CG +  APC+IP
Sbjct:    7 CSNGLPGYQDGQ-ACCLMNCGLCGGDGCGSVNGTAGAS--DCCPSTIINSARVCGGDIVAPCIIP 68
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.680e-5
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 3 
Query:  381 VCSDGTPGIESHN-GACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCG-EYDAPCVIPT 578
            VCS+G  GI+S +  ACCV ECG CGG GC   A   +L+  +CC   I+E+   C     APC+I T
Sbjct:   29 VCSNGLEGIQSTSLDACCVEECGLCGGVGCTP-ANTSSLTSADCCATEIIESGTLCEVSMAAPCIITT 95
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BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 9.710e-5
Identity = 29/65 (44.62%), Postives = 36/65 (55.38%), Query Frame = 3 
Query:  381 VCSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTECCEGLILETNYPCG-EYDAPCVI 572
            +CS+G  GI+S N ACC+ ECG+CGG GC +      L   +CCE  I E    C     APC I
Sbjct:  445 MCSNGFSGIQSGN-ACCLAECGECGGHGCGEFGG--GLGADKCCESDIEEYGELCSIALAAPCYI 506
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6048.14588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJ69_ECTSI4.010e-946.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG29_9PHAE1.830e-852.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ68_ECTSI5.260e-747.69WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRN0_ECTSI1.510e-646.88Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JJ37_9PHAE5.530e-644.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZM0_ECTSI9.810e-640.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LML5_ECTSI1.680e-545.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6S4_9PHAE9.710e-544.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6048contigL-elsbetiae_contig6048:4468..5427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size581
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6048.14588.1prot_L-elsbetiae_contig6048.14588.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6048 4468..5218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.540988-CDS-L-elsbetiae_contig6048:4467..48231622816660.540988-CDS-L-elsbetiae_contig6048:4467..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6048 4468..4823 -
1691683720.3232517-CDS-L-elsbetiae_contig6048:4467..48231691683720.3232517-CDS-L-elsbetiae_contig6048:4467..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6048 4468..4823 -
1622816660.551408-CDS-L-elsbetiae_contig6048:5202..52181622816660.551408-CDS-L-elsbetiae_contig6048:5202..5218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6048 5203..5218 -
1691683720.336953-CDS-L-elsbetiae_contig6048:5202..52181691683720.336953-CDS-L-elsbetiae_contig6048:5202..5218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6048 5203..5218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.569981-UTR-L-elsbetiae_contig6048:5218..54271622816660.569981-UTR-L-elsbetiae_contig6048:5218..5427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6048 5219..5427 -
1691683720.3464274-UTR-L-elsbetiae_contig6048:5218..54271691683720.3464274-UTR-L-elsbetiae_contig6048:5218..5427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6048 5219..5427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6048.14588.1

>prot_L-elsbetiae_contig6048.14588.1 ID=prot_L-elsbetiae_contig6048.14588.1|Name=mRNA_L-elsbetiae_contig6048.14588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MTIVGGDADTAPTETPSPVSLEPESTPEPTTDETSEPQPTEVPTATDMST
SNEDPSPVCSDGTPGIESHNGACCVVECGQCGGSGCADMAADRNLSPTEC
CEGLILETNYPCGEYDAPCVIPTG
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mRNA from alignment at L-elsbetiae_contig6048:4468..5427-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6048.14588.1 ID=mRNA_L-elsbetiae_contig6048.14588.1|Name=mRNA_L-elsbetiae_contig6048.14588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig6048:4468..5427- (Laminarionema elsbetiae ELsaHSoW15)
AGTTTAGCCCTTTTTTGGTAGCTAGTCGATTGCCCAAGTTCAGCCTTTTT
TGGTGGTAAATTTACTGCTGAATTGCAACTAACTCACAATCAAGGTTTCC
GTTGGCAGACCTGCCCCGTTTTAATCGCGCCTCGCCCTCCCCTCCCCCAC
TCCTCGCATTCTCCCTGTATGGTGCCACGGTCAACCTGGATGTTTTGGGC
TCCAGTGACATGACAATCGTTGGAGGTAGGCCTCTTTCCCATTGTTGCTC
TGCCTGGCTGTTGCTGTGTTGCGGGCTAGGGGCAGGCAATATATATATGG
AGAAGCGTCGACGAGTTTGGTTGTATCGTCGACGAGTTTGGTTGTATGGG
CAACTGCTGCGTCCATCAAAAGGGGCCCGGTGAATAGGCTTCTACCTTTC
GCTCAGAGCAGAGGAGTACCAAGCCGCGCAACAGTACCGCTGGTCCGATC
GGTTGTTGTTGTTGTTGTTGTTGTTGTGTTTCCTATCTCGTCCGAGAACG
TGCAAAGAACCTCGTGTCAACCACCAACATCTCTGCTTTTTAACTCTCCG
CCATCCACGTTGTTCTCTCACGTGCAACCCCGCGTCTGACCTTGCTATAC
CCAGGCGACGCGGACACAGCACCCACAGAGACGCCCAGCCCTGTTTCTCT
TGAACCTGAATCTACGCCAGAACCTACCACCGACGAGACCTCCGAACCCC
AACCCACAGAGGTGCCAACCGCCACCGATATGTCTACCTCCAACGAGGAC
CCGAGCCCAGTGTGCAGCGACGGCACTCCCGGCATCGAGTCTCACAACGG
CGCCTGCTGCGTGGTGGAGTGCGGCCAGTGCGGTGGTTCCGGCTGCGCCG
ACATGGCAGCGGACCGCAACCTCAGCCCCACCGAGTGCTGCGAGGGATTG
ATCCTGGAGACCAACTATCCCTGCGGAGAATACGACGCCCCCTGCGTCAT
CCCGACCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6048:4468..5427-

>mRNA_L-elsbetiae_contig6048.14588.1 ID=mRNA_L-elsbetiae_contig6048.14588.1|Name=mRNA_L-elsbetiae_contig6048.14588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig6048:4468..5427- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAATCGTTGGAGATGACAATCGTTGGAGGCGACGCGGACACAGCAC
CCACAGAGACGCCCAGCCCTGTTTCTCTTGAACCTGAATCTACGCCAGAA
CCTACCACCGACGAGACCTCCGAACCCCAACCCACAGAGGTGCCAACCGC
CACCGATATGTCTACCTCCAACGAGGACCCGAGCCCAGTGTGCAGCGACG
GCACTCCCGGCATCGAGTCTCACAACGGCGCCTGCTGCGTGGTGGAGTGC
GGCCAGTGCGGTGGTTCCGGCTGCGCCGACATGGCAGCGGACCGCAACCT
CAGCCCCACCGAGTGCTGCGAGGGATTGATCCTGGAGACCAACTATCCCT
GCGGAGAATACGACGCCCCCTGCGTCATCCCGACCGGCGCGACGCGGACA
CAGCACCCACAGAGACGCCCAGCCCTGTTTCTCTTGAACCTGAATCTACG
CCAGAACCTACCACCGACGAGACCTCCGAACCCCAACCCACAGAGGTGCC
AACCGCCACCGATATGTCTACCTCCAACGAGGACCCGAGCCCAGTGTGCA
GCGACGGCACTCCCGGCATCGAGTCTCACAACGGCGCCTGCTGCGTGGTG
GAGTGCGGCCAGTGCGGTGGTTCCGGCTGCGCCGACATGGCAGCGGACCG
CAACCTCAGCCCCACCGAGTGCTGCGAGGGATTGATCCTGGAGACCAACT
ATCCCTGCGGAGAATACGACGCCCCCTGCGTCATCCCGACCGGC
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