mRNA_L-elsbetiae_contig604.14580.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A6H5KIS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS9_9PHAE) HSP 1 Score: 147 bits (371), Expect = 7.270e-38 Identity = 108/281 (38.43%), Postives = 127/281 (45.20%), Query Frame = 2 Query: 212 GGAGQPTRSECGTTMKRKLGMGADGGEVVWATDATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAP-PDIPAXXXXXXXXXXXXXX-----------------------------------------------------------------------------RSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPLEGELAGEAASAPSSGGGDEEQLGQGVRG-RAAGGPRGWKVFDCYDEH 817 GG G E G M+++LG+ ADG YVFLH+R CDHLFVVSDIR+EPVP P P++ A XXXXXXX ++YPRLSF PN RRCG+C TKTAVK S GHPLSDKA L CC+ECF+ML+ D D+ PLEGELAG+ A+ P G QG +AAGGPRGW+VF CYDEH Sbjct: 162 GGKGGLAVCEQGQRMRKRLGLEADG---------------------YVFLHHRDCDHLFVVSDIRIEPVPVPPPEPELTAVHLSGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGRGEGKKEEYPRLSFLSNPNCRRCGICLTKTAVKMSFGHPLSDKASLFCCQECFEMLHLDTDQKPLEGELAGDVATTPPPGDTTSPSPTQGPEASQAAGGPRGWRVFRCYDEH 421
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: D7FU78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU78_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.930e-32 Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 2 Query: 503 QQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPLEGELAGEAASAPSSGGGDEEQLGQGVR-GRAAGGPRGWKVFDCYDEH 817 ++YPRLSF P+ RRCG+C TKTAVK SVGHPLSDKA L CC+ECF+ML+ DAD+ PLEGELAG+ A+ G QG G+AA GPRGW+VF C+DEH Sbjct: 883 EEYPRLSFLSNPHCRRCGICLTKTAVKMSVGHPLSDKASLFCCQECFEMLHLDADQKPLEGELAGDVATTSPPGDTTSPSPPQGPEAGQAAAGPRGWRVFRCHDEH 988
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A6T6L6W4_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6L6W4_9RHOD) HSP 1 Score: 58.5 bits (140), Expect = 3.270e-6 Identity = 33/108 (30.56%), Postives = 50/108 (46.30%), Query Frame = 2 Query: 338 LGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYD 661 L YVF+H +C+HL +++DIRM DI A+QYPRL R + R C +C A K G + ++P CE C+++L+Y+ Sbjct: 247 LARFYVFVHEEICEHLIMITDIRML--------DINVDLIN-------------AEQYPRLMSRARTMWRSCDICSNGRASKVVFGDRFAPESPCFFCEPCYNLLHYN 333
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A673ZTA6_SALTR (snRNA-activating protein complex subunit 3 n=3 Tax=Salmoninae TaxID=504568 RepID=A0A673ZTA6_SALTR) HSP 1 Score: 54.7 bits (130), Expect = 3.920e-5 Identity = 32/124 (25.81%), Postives = 51/124 (41.13%), Query Frame = 2 Query: 308 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 679 D DL+ +G Y+F H C+H+ +++DIR+ D + YP L+ + + +R+C VC+ + P + P CE CF ML+YD N L Sbjct: 136 DTRFYDLKVKVGYPYLFCHQGDCEHVVIITDIRLTHKDDCLDRKL----------------------YPLLTHKHRVMTRKCAVCHVYIGRWLTTNDPFAPNDPCLFCERCFRMLHYDKKGNKL 237
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: H2TJN2_TAKRU (snRNA-activating protein complex subunit 3 n=3 Tax=Takifugu TaxID=31032 RepID=H2TJN2_TAKRU) HSP 1 Score: 55.1 bits (131), Expect = 4.940e-5 Identity = 32/124 (25.81%), Postives = 54/124 (43.55%), Query Frame = 2 Query: 308 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 679 D DL+ +G Y++ H C+HL +++DIR+ D + YP L+ + + +++C VC+ + G L+ P C++CF ML+YDA N L Sbjct: 264 DTRFVDLKVKVGFPYLYCHQGDCEHLIIITDIRLAHRSDCLDKKL----------------------YPLLTHKHRFTTQKCSVCHVFIGRWFTTGDRLAPSDPCLFCDKCFRMLHYDAQGNKL 365
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A6P3W2M2_CLUHA (snRNA-activating protein complex subunit 3 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W2M2_CLUHA) HSP 1 Score: 54.7 bits (130), Expect = 6.650e-5 Identity = 35/124 (28.23%), Postives = 54/124 (43.55%), Query Frame = 2 Query: 308 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 679 D T DLR +G Y + H C+H+ V++DIR+ D + YP LS + + +R+C VC+ + + L+ P C++CF ML+YDA N L Sbjct: 267 DMTFYDLRMKIGYPYFYCHQGDCEHVMVLTDIRLIHPDDCRDRTL----------------------YPLLSHKHRVMTRKCCVCHLYISRWITTNDRLAPMDPCLFCDKCFRMLHYDAQGNKL 368
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: A0A4W5Q0G3_9TELE (snRNA-activating protein complex subunit 3 n=19 Tax=Salmonidae TaxID=8015 RepID=A0A4W5Q0G3_9TELE) HSP 1 Score: 54.7 bits (130), Expect = 6.790e-5 Identity = 32/124 (25.81%), Postives = 51/124 (41.13%), Query Frame = 2 Query: 308 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 679 D DL+ +G Y+F H C+H+ +++DIR+ D + YP L+ + + +R+C VC+ + P + P CE CF ML+YD N L Sbjct: 278 DTRFYDLKVKVGYPYLFCHQGDCEHVVIITDIRLAHKDDCLDRKL----------------------YPLLTHKHRVMTRKCAVCHVYIGRWLTTNDPFAPNDPCLFCERCFRMLHYDKKGNKL 379
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Match: UPI00148F9B96 (snRNA-activating protein complex subunit 3 isoform X1 n=3 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F9B96) HSP 1 Score: 54.3 bits (129), Expect = 8.900e-5 Identity = 31/124 (25.00%), Postives = 54/124 (43.55%), Query Frame = 2 Query: 308 DATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPL 679 D ADL+ +G Y++ H C+HL +++DIR+ D + YP L+ + + +++C VC+ + ++ P C++CF ML+YDA N L Sbjct: 266 DTRFADLKVKVGFPYLYCHQGDCEHLVIITDIRLTHANDCLDKKL----------------------YPLLTHKHRVVTKKCAVCHVYIGRWFTTNDKVAPSDPCLFCDKCFRMLHYDAQGNKL 367 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig604.14580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig604.14580.1 >prot_L-elsbetiae_contig604.14580.1 ID=prot_L-elsbetiae_contig604.14580.1|Name=mRNA_L-elsbetiae_contig604.14580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp MRGGSGGAGQPTRSECGTTMKRKLGMGADGGEVVWATDATVADLRPMLGEback to top mRNA from alignment at L-elsbetiae_contig604:10076..12662+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig604.14580.1 ID=mRNA_L-elsbetiae_contig604.14580.1|Name=mRNA_L-elsbetiae_contig604.14580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2587bp|location=Sequence derived from alignment at L-elsbetiae_contig604:10076..12662+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig604:10076..12662+ >mRNA_L-elsbetiae_contig604.14580.1 ID=mRNA_L-elsbetiae_contig604.14580.1|Name=mRNA_L-elsbetiae_contig604.14580.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig604:10076..12662+ (Laminarionema elsbetiae ELsaHSoW15)back to top |