mRNA_L-elsbetiae_contig6038.14577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6038.14577.1
Unique NamemRNA_L-elsbetiae_contig6038.14577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6038.14577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6038contigL-elsbetiae_contig6038:7839..10522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size386
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6038.14577.1prot_L-elsbetiae_contig6038.14577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6038 7839..10522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.0483997-CDS-L-elsbetiae_contig6038:7838..78731622816659.0483997-CDS-L-elsbetiae_contig6038:7838..7873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 7839..7873 -
1691683719.1789854-CDS-L-elsbetiae_contig6038:7838..78731691683719.1789854-CDS-L-elsbetiae_contig6038:7838..7873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 7839..7873 -
1622816659.059765-CDS-L-elsbetiae_contig6038:8086..82991622816659.059765-CDS-L-elsbetiae_contig6038:8086..8299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 8087..8299 -
1691683719.1946433-CDS-L-elsbetiae_contig6038:8086..82991691683719.1946433-CDS-L-elsbetiae_contig6038:8086..8299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 8087..8299 -
1622816659.0740328-CDS-L-elsbetiae_contig6038:8477..85521622816659.0740328-CDS-L-elsbetiae_contig6038:8477..8552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 8478..8552 -
1691683719.2067363-CDS-L-elsbetiae_contig6038:8477..85521691683719.2067363-CDS-L-elsbetiae_contig6038:8477..8552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 8478..8552 -
1622816659.0867565-CDS-L-elsbetiae_contig6038:10461..105221622816659.0867565-CDS-L-elsbetiae_contig6038:10461..10522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 10462..10522 -
1691683719.2180836-CDS-L-elsbetiae_contig6038:10461..105221691683719.2180836-CDS-L-elsbetiae_contig6038:10461..10522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 10462..10522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6038.14577.1

>prot_L-elsbetiae_contig6038.14577.1 ID=prot_L-elsbetiae_contig6038.14577.1|Name=mRNA_L-elsbetiae_contig6038.14577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
SYIQSPWHTAVTRSSVGSNFGTKMKVASPAALLLSALLVSTAAAQDQPDE
ASFAPTPSPQETTTDAPTPSSPDTDVESYLITPPTEIMTIPSSCEPGNVP
TFRYAASSGKVGLGRLYAESPGCFTMTD
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mRNA from alignment at L-elsbetiae_contig6038:7839..10522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6038.14577.1 ID=mRNA_L-elsbetiae_contig6038.14577.1|Name=mRNA_L-elsbetiae_contig6038.14577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2684bp|location=Sequence derived from alignment at L-elsbetiae_contig6038:7839..10522- (Laminarionema elsbetiae ELsaHSoW15)
TCGTACATCCAATCACCTTGGCATACGGCGGTGACTCGTTCTTCGGTAGG
AAGCAACTTCGGTGAGCCTGTTTCCCTAAGGATGAACTCCGCGTGTTGCA
CCGGTCTGCTGTTTTTGAAGATCGTAGGTTTCGTGAGATGAGTATCCCAT
CCCCTCCCTTCCCGGTTGCTCTTTACCCTGACTCCCGAACGGCGTGAAGT
CACAGAGTGCCAGCCTAACTGGGTACCGGTGTTATTTCAGGGGAAAGGTG
GCTCATTGTATCCTATACTACGTGTTGCGCCAATAGGCAGTTTTGATGCT
TTTATTTACTAACGTTTTGTATCTGTTGCTCGCGGGTGATTTACCTATGT
ACGTCACCTGCACGTAAAGCCGTTTAAAGCGGCGTGTTGAAAATAAAATA
CGTACATACGAATGTGGAATATTACATTTGTACCACCGACGAATGAAACA
CCGCCCCATGTACCACCGCCCCACACCAAAGCCAGTCGTTAGGATGTGCA
TAAGGATTGTGCATAGGTTGTTTGACCGTAGTAGCTGCGTTCTTTTCCCG
CAGGTTTGGCAAAAACAACGGCACCGAAACAACGGCGGAAAGTCTTGAAA
ATTACGCACATGCAAAAATTTACATTTATATAAGCGCATGCATCTTGCGT
CTTCATGAGATAGATATGATATCGAACAGATCTGCAGCGCAGAGTTTGCT
GTGCGTCTAGCTGTGCGTAATTATTACCTCGGGTTCCAATTCATTTAAAA
AACGGGTTCATCGTTTTGATGGCCTTTTAAAGCATATCTAATCTATTTAA
AACGCGTGCGTGCTTTATTGGGGTTCGACCGACGTCAGGTTGTTGTTCCG
GACCCGACCACGACCAATCCCACTAGATCATCTATGTCGCCAATAAATCT
ACTCGGCTCAACGTAGCTGTATGTATCAAGTCTTAAGGGGACGGGTAGGG
GTACCCATTTATCAGTTTGCGCCTATTTCGAAAAATATCACATACCCCCG
CTGAACATCACGGAGCCACTCTTGAAGTTTGTGTGGGCGTTCCCAAAATC
TCCGCGTGTTTTGACAGTCCTGACCAAAATCAGAGGTACTTTGCGAATAT
CAGCAGTTTTTTCGGTGTTTCTTGGCCATATTTTAAACCACCTCTCACGC
GTCGGATATGTAAGGTATGCGCTATTTAGCTGTTACACCCCTCCAATATT
CCACACTCTTCGAAAACAGCCGGGCTACAATCGCGTCGAGTCCGTTTCTT
GATTGGTGCAAACCTCACGGTGCTAGGCTTTGGGGCGCAGATTCAAATAT
TCACCCGACTGACCGCAAAAAAGACCGTCGGAGAAACGGGGTCGTGTGCA
CCAGCACATCGAAAGCGTGACTCACAGCTGCCTGCTACCGCTACCCATGA
CATGCGACGGCTCCTTCACACCACATCAGTAGGCCCTGCCAGCGGCTTGC
GCTTTGCTTCCTTGTGAGGGCCTCGCTCGACGACTTCGTGCGCACCAAAC
TGTGAACTGAGGTGCTTCTTACAGCTGTTTCGAAAGCAGTGATTTTTGAC
CCTCTGATGAGGAATACCTTTGCCTTCAAGGCAGTTAGAAATTAGGCGCA
GACCTTTTATCTGCAAAGAAGTGCAAGCTGTTGCGTGTGAGTATTTCCGG
TGTTGTTGCAGCAGGATGCTAAGGGGCGAAGTGGAAAGTGCACTTTCCAA
AGTACATTGTGCCCCCCCCCCCTACCCGTCGCCTTAAGTGGTTAAAAAAT
TAGCGTTGGCGTGGCCTGCGCTGTGCTCTCAACGGGTAAGGAAGATACTG
TAATACGCCGTCCCCTTCTCTCTACTACGTAAACACAAATGTTCTTACTA
AACTAGACTAGATATGAACCTGCGCTTCTTACTTAAATCACGGGTAGCAA
CATTTTTTTTCGTAGTTAATTCCAACTTTTGTCTCTTCTATCATGCGCGT
GCTTCTTCTCTCCACCCCAGGGACGAAAATGAAGGTGGCATCGCCCGCCG
CCCTCCTTCTCTCGGCGCTGCTCGTCTCGACTGCAGCGGCTCAAGGTGCG
GATATATTGATTGTTAAGTGCACCTACATCGTTCTGAAATGGATCGGTCA
CGTGGCTCTTCGTTCTGCGGATACGTGCGTAAGAATATAAGGAACACCAG
CACACACTTCGATTTCCCGTCTTGCTCCCATGTGTTCCGTCCGTCCTGCG
ACCGATCTGCTCGCACACAACAGATCAGCCAGACGAAGCCTCGTTTGCCC
CGACCCCCAGCCCCCAGGAGACGACGACCGACGCCCCGACCCCTTCCTCT
CCTGATACTGATGTCGAATCCTACCTCATCACTCCGCCCACTGAGATCAT
GACGATCCCGAGTAGCTGCGAGCCGGGCAACGTCCCCACTTTCCGCTACG
CCGCCTCCAGCGGAAAAGTTGGACTGGGCCGCCTCTGTGAGTAGACTACT
CCTATTTGGCGCGAGCGCGCTCTCGCCACGCGGGCTTTAGTTATAGCCTT
AGTTGTGGAGAGGTTGCTTCTCATTTGCTTTTGCTTTTGCTGCTCGCGTT
GGATTCGGAACTCGGCCGAACCTGTCCTCTTGGGTGTTTGTTTCTTTGTT
TTGGCCTTGCCCACCCGCCTTCGATTCCATCTGCGATCGTGTGATACAGA
CGCCGAGAGCCCAGGGTGCTTCACCATGACCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6038:7839..10522-

>mRNA_L-elsbetiae_contig6038.14577.1 ID=mRNA_L-elsbetiae_contig6038.14577.1|Name=mRNA_L-elsbetiae_contig6038.14577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig6038:7839..10522- (Laminarionema elsbetiae ELsaHSoW15)
TCGTACATCCAATCACCTTGGCATACGGCGGTGACTCGTTCTTCGGTAGG
AAGCAACTTCGTCGTACATCCAATCACCTTGGCATACGGCGGTGACTCGT
TCTTCGGTAGGAAGCAACTTCGGGACGAAAATGAAGGTGGCATCGCCCGC
CGCCCTCCTTCTCTCGGCGCTGCTCGTCTCGACTGCAGCGGCTCAAGGGA
CGAAAATGAAGGTGGCATCGCCCGCCGCCCTCCTTCTCTCGGCGCTGCTC
GTCTCGACTGCAGCGGCTCAAGATCAGCCAGACGAAGCCTCGTTTGCCCC
GACCCCCAGCCCCCAGGAGACGACGACCGACGCCCCGACCCCTTCCTCTC
CTGATACTGATGTCGAATCCTACCTCATCACTCCGCCCACTGAGATCATG
ACGATCCCGAGTAGCTGCGAGCCGGGCAACGTCCCCACTTTCCGCTACGC
CGCCTCCAGCGGAAAAGTTGGACTGGGCCGCCTCTATCAGCCAGACGAAG
CCTCGTTTGCCCCGACCCCCAGCCCCCAGGAGACGACGACCGACGCCCCG
ACCCCTTCCTCTCCTGATACTGATGTCGAATCCTACCTCATCACTCCGCC
CACTGAGATCATGACGATCCCGAGTAGCTGCGAGCCGGGCAACGTCCCCA
CTTTCCGCTACGCCGCCTCCAGCGGAAAAGTTGGACTGGGCCGCCTCTAC
GCCGAGAGCCCAGGGTGCTTCACCATGACCGACACGCCGAGAGCCCAGGG
TGCTTCACCATGACCGAC
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