mRNA_L-elsbetiae_contig6032.14570.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6032.14570.1
Unique NamemRNA_L-elsbetiae_contig6032.14570.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6032.14570.1 vs. uniprot
Match: A0A6H5LGE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.370e-15
Identity = 57/121 (47.11%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    4 GGARETASAP-PLALFLRLRTPTEVFRLLSAAVAAERSRRPLSARACSVFVSAAEGLHGALAAEATDAWRAAVCPDNGGAGVGLAGRTGAPSDSGXXXXXXAAGVRQAEIESVLAGLANCW 363
            GG + T   P PLALFLRLR+PT   RLLS  VA E S RP  A+   +F+SAAEGLH AL  E + AWRA         GVGLAG     +  G           Q  IE++L GL NCW
Sbjct:  374 GGNKATEYTPSPLALFLRLRSPTAAVRLLS--VAEECSERPHPAKVSDMFLSAAEGLHNALTFEVSAAWRA---------GVGLAGTASTLAGHGSSSSV----AEQVRIETILPGLVNCW 479
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BLAST of mRNA_L-elsbetiae_contig6032.14570.1 vs. uniprot
Match: D7FV98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV98_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-13
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    4 GGARETASAP-PLALFLRLRTPTEVFRLLSAAVAAERSRRPLSARACSVFVSAAEGLHGALAAEATDAWRAAV 219
            GG++ T   P PLALFLRLR+PTE  RLLS  VA ERS RP  A+A ++F+SAAEGLH AL  E + AWRAAV
Sbjct:  506 GGSKATEYTPSPLALFLRLRSPTEAVRLLS--VAEERSERPHPAKASAMFLSAAEGLHNALTFEVSAAWRAAV 576
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6032.14570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGE7_9PHAE6.370e-1547.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV98_ECTSI1.380e-1363.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6032contigL-elsbetiae_contig6032:675..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.5428445-CDS-L-elsbetiae_contig6032:674..10371622816658.5428445-CDS-L-elsbetiae_contig6032:674..1037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6032 675..1037 +
1691683718.7738698-CDS-L-elsbetiae_contig6032:674..10371691683718.7738698-CDS-L-elsbetiae_contig6032:674..1037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6032 675..1037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6032.14570.1prot_L-elsbetiae_contig6032.14570.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6032 675..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6032.14570.1

>prot_L-elsbetiae_contig6032.14570.1 ID=prot_L-elsbetiae_contig6032.14570.1|Name=mRNA_L-elsbetiae_contig6032.14570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
RGGARETASAPPLALFLRLRTPTEVFRLLSAAVAAERSRRPLSARACSVF
VSAAEGLHGALAAEATDAWRAAVCPDNGGAGVGLAGRTGAPSDSGGGGGG
GAAGVRQAEIESVLAGLANCW
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mRNA from alignment at L-elsbetiae_contig6032:675..1038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6032.14570.1 ID=mRNA_L-elsbetiae_contig6032.14570.1|Name=mRNA_L-elsbetiae_contig6032.14570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=364bp|location=Sequence derived from alignment at L-elsbetiae_contig6032:675..1038+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGAGGAGCTCGCGAGACGGCGTCGGCACCGCCGCTGGCCTTGTTTCT
CCGCCTGCGAACACCAACGGAGGTGTTTCGTCTCCTTTCCGCCGCCGTCG
CCGCAGAACGCTCCCGGCGCCCTCTTTCGGCGAGGGCCTGTTCGGTGTTC
GTGTCGGCCGCCGAAGGGCTGCACGGCGCGCTGGCGGCGGAAGCGACTGA
CGCGTGGCGTGCCGCAGTCTGCCCAGACAACGGCGGCGCAGGAGTCGGTC
TCGCAGGAAGGACAGGCGCGCCGTCGGACAGTGGTGGTGGTGGTGGTGGT
GGTGCCGCGGGGGTGAGGCAGGCGGAGATAGAGTCTGTTCTCGCCGGGCT
GGCGAATTGCTGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6032:675..1038+

>mRNA_L-elsbetiae_contig6032.14570.1 ID=mRNA_L-elsbetiae_contig6032.14570.1|Name=mRNA_L-elsbetiae_contig6032.14570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig6032:675..1038+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGAGGAGCTCGCGAGACGGCGTCGGCACCGCCGCTGGCCTTGTTTCT
CCGCCTGCGAACACCAACGGAGGTGTTTCGTCTCCTTTCCGCCGCCGTCG
CCGCAGAACGCTCCCGGCGCCCTCTTTCGGCGAGGGCCTGTTCGGTGTTC
GTGTCGGCCGCCGAAGGGCTGCACGGCGCGCTGGCGGCGGAAGCGACTGA
CGCGTGGCGTGCCGCAGTCTGCCCAGACAACGGCGGCGCAGGAGTCGGTC
TCGCAGGAAGGACAGGCGCGCCGTCGGACAGTGGTGGTGGTGGTGGTGGT
GGTGCCGCGGGGGTGAGGCAGGCGGAGATAGAGTCTGTTCTCGCCGGGCT
GGCGAATTGCTGGCGAGGAGGAGCTCGCGAGACGGCGTCGGCACCGCCGC
TGGCCTTGTTTCTCCGCCTGCGAACACCAACGGAGGTGTTTCGTCTCCTT
TCCGCCGCCGTCGCCGCAGAACGCTCCCGGCGCCCTCTTTCGGCGAGGGC
CTGTTCGGTGTTCGTGTCGGCCGCCGAAGGGCTGCACGGCGCGCTGGCGG
CGGAAGCGACTGACGCGTGGCGTGCCGCAGTCTGCCCAGACAACGGCGGC
GCAGGAGTCGGTCTCGCAGGAAGGACAGGCGCGCCGTCGGACAGTGGTGG
TGGTGGTGGTGGTGGTGCCGCGGGGGTGAGGCAGGCGGAGATAGAGTCTG
TTCTCGCCGGGCTGGCGAATTGCTGG
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