mRNA_L-elsbetiae_contig603.14567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig603.14567.1
Unique NamemRNA_L-elsbetiae_contig603.14567.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: D7G0I0_ECTSI (Rtdr1 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I0_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 8.910e-81
Identity = 132/180 (73.33%), Postives = 142/180 (78.89%), Query Frame = 1 
Query:    1 MAEVAIENRIYRHEAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSVKAGLMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNETEDLQPLALRV 540
            MAEVAIENR+YR+EAKPQPTAN+PGKIVEAFGLGKCPKLAEQVRS SLLVRVNTLRVLCEEFKNPT IAGSVKAGLMSTLPKM LD+D+DTRKFSSKAMVAAARD+NGRTALL+ RA ET+F AL                                YPA+LVDKAVNETE+LQPLALRV
Sbjct:    1 MAEVAIENRVYRYEAKPQPTANEPGKIVEAFGLGKCPKLAEQVRSDSLLVRVNTLRVLCEEFKNPTIIAGSVKAGLMSTLPKMALDSDIDTRKFSSKAMVAAARDYNGRTALLKARAPETMFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYPARLVDKAVNETEELQPLALRV 180
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A836CN86_9STRA (Rtdr1 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN86_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.460e-46
Identity = 87/171 (50.88%), Postives = 109/171 (63.74%), Query Frame = 1 
Query:   28 IYRHEAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSVKAGLMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNETEDLQPLALRV 540
            IY HEAK  P+A     IVEA+GLGKCPKL EQV+S+   V  N L+ LCEEF NP +IA   +A + + LP   L +   TR  SS+A+  A+RD+NGR ALL    L TV+ +LDDES +VR NIY+ L   S    G RALV A YP +LV KA +ET+ L+P  L V
Sbjct:    8 IYSHEAKENPSAKGSSTIVEAYGLGKCPKLVEQVQSEDPEVCQNALKALCEEFHNPASIASCARANVFTVLPAFTLSSSQVTRARSSRALALASRDYNGRNALLRVGFLTTVYPSLDDESPEVRANIYEALEGTSRMPAGTRALVHAGYPERLVAKARDETDALKPAVLDV 178
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A7S2UZC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZC6_9STRA)

HSP 1 Score: 157 bits (397), Expect = 9.800e-45
Identity = 86/175 (49.14%), Postives = 109/175 (62.29%), Query Frame = 1 
Query:   22 NRIYRHEAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSVKAGLMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTG--PGIRALVDASYPAKLVDKAVNETEDLQPLALRV 540
            N++  HE+K QP    P KIVEAFG GKCPKL +QV+S  + VR N L  LCEEFK+P  + G V  G++S L +M  D D  TR+ +S+A+  A RD N RT++LE    E V  ALDDE VDVRRN+Y+ L   S  G  P +R LV A YPA LV KA  E   +  L +R+
Sbjct:   11 NQLLNHESKAQPIRYAPTKIVEAFGRGKCPKLVKQVQSGFIDVRRNALSALCEEFKDPQVVHGCVVEGIISILAQMTKDEDPGTRERASRALAVAGRDANARTSMLESDMAEAVLPALDDEMVDVRRNVYEALLQFSDEGMPPQVRQLVAAGYPAVLVRKAPEEDPSVCHLIMRL 185
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A7S1XJA5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJA5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.890e-41
Identity = 77/184 (41.85%), Postives = 111/184 (60.33%), Query Frame = 1 
Query:    1 MAEVAIENRIYRHEAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSVKAGLMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNETEDLQPLALRVRKCL 552
            M E +  N    H A+  P       +VEAFG  KCPKL EQV+ + +++RVN L+VLC+EF+NP ++ G + AG++  L + + + D +TR +SSKA+  AA D NGR A+L E    T+F  LDD SVDVR NI   L + S     +  +V+  YPA+LV KA  E   ++PL L++ + L
Sbjct:    1 MMEPSSGNGFLLHAARENPPQIDKYSVVEAFGRRKCPKLVEQVQEEDVVLRVNALKVLCDEFRNPISVQGCIDAGVLQALHRHIKEGDDETRVWSSKALYLAAEDSNGRAAMLAEDTAGTMFPCLDDASVDVRNNILSALCSFSAGVEAVHRMVNVGYPAQLVTKAAKELASVKPLVLKLLRNL 184
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A482SD26_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SD26_9ARCH)

HSP 1 Score: 122 bits (305), Expect = 5.080e-30
Identity = 65/163 (39.88%), Postives = 98/163 (60.12%), Query Frame = 1 
Query:   55 PTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSVKAGLMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEER--ALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNETEDLQPLALR 537
            P  + P KIVEA+GLGKCPKL EQ+ + +L+VRVN L VLC+EF+NP +I G  + G+++ L +M++D D  TR  +SKA+  AA+D NG  A+L+     +  +   ++D S  VR N+Y+ +   + T  GI A V        V     E  +L+P+ L+
Sbjct:    2 PVPSAPTKIVEAYGLGKCPKLVEQICAPNLMVRVNALEVLCDEFQNPYSIEGCAREGVITVLAEMIIDPDHITRVRASKALWLAAKDANGLAAILDNHNTVVPLLVKGVNDPSEVVRGNVYECILAVTRTSEGIHACVRHGVTTAFVVVLRKEFSELKPVLLK 164
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A397BLS9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BLS9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.700e-11
Identity = 42/158 (26.58%), Postives = 72/158 (45.57%), Query Frame = 1 
Query:   40 EAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSVKAG--LMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNE 507
            EAK  P       +VEAFG+GKCP+L   +    + V V+TL+ L     NP  +   +     ++  L K++   + + ++ ++  +   A   NGR AL+  R +  +  A       V +N+  T  + ST   G + +   SY   ++DK   E
Sbjct:   35 EAKANPHPIADNAVVEAFGVGKCPRLVRLLSDDDVGVLVHTLKCLTGVLNNPRDVVACLDENHSILDPLSKLLYHGNAEIQQLAAACLHLIASHANGRAALIANRTMRKIMKAFARTDEVVVQNLLDTALHVSTILAGAQEMTQNSYVPIILDKLKQE 192
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A3R7WL29_9STRA (Arm_2 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WL29_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.110e-10
Identity = 42/158 (26.58%), Postives = 73/158 (46.20%), Query Frame = 1 
Query:   40 EAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSVKAG--LMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNE 507
            EAK  P       +VEAFG+GKCP+L   +    + V V+TL+ L     NP  +   +     ++  L K++   + + ++ ++  +   A   NGR AL+ +R +  +  A       V +N+  T  + ST   G + +   SY   ++DK   E
Sbjct:   35 EAKANPHPIADNAVVEAFGVGKCPRLVRLLSDDDVGVLVHTLKCLTGVLNNPRDVVACLDENHSILDPLSKLLYHGNAEIQQLAAACLHLIASHANGRAALIAKRTMRKIMKAFARTDEVVVQNLLDTALHVSTILAGAQEMTQNSYVPIILDKLKQE 192
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A6G0X1P5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1P5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.090e-10
Identity = 43/171 (25.15%), Postives = 75/171 (43.86%), Query Frame = 1 
Query:   16 IENRIYRH----EAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNPTTIAGSV--KAGLMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNET 510
             ++  +RH    EAK  P       +VEAFGLGKCP+L   +      V ++TL+ L     +P         K  ++  L +++   ++D ++  + A+   +   NGR   L +R +  +  A       +   +  T  N STT  G + +   SY   ++DK   E+
Sbjct:   20 FKSTTHRHLAGSEAKANPAPFADNAVVEAFGLGKCPRLVRLLNETDEAVLIHTLKSLGGVLNDPKDAVACFDEKLHVLEPLSRLIYHNNIDIQQLVASALCLISSHANGRAEFLSQRTMRKILRAFVATDDILLTRLLDTALNISTTLSGAQDMTQNSYVPVILDKLKQES 190
[Close]
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Match: A0A485LNN0_9STRA (Aste57867_23073 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNN0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.890e-8
Identity = 40/161 (24.84%), Postives = 73/161 (45.34%), Query Frame = 1 
Query:   40 EAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLVRVNTLRVLCEEFKNP--TTIAGSVKAGLMSTLPKMVLDADLDTRKFSSKAMVAAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGIRALVDASYPAKLVDKAVNETED 516
            EAK  P A     +VEAFGLGKCP+L   +  +S  V ++TL  L     +P    +     A ++  L K+V  A+   ++ +++ +   +   NGR  L+  R +  +  A       +  +++ T  N  +   G + +    Y   ++DK  ++  D
Sbjct:   34 EAKLNPPAIADNAVVEAFGLGKCPRLVRLLGDESEAVLLHTLTSLAGVLSDPRDVVLCFDEHAHVLEPLAKLVYHANDAIQERTAECLKVISSHANGRAELISSRTMRKILKAFVRTEEQLMVHLFDTALNVGSLLSGAQEMTQNGYVNIVMDKLKHDLSD 194
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig603.14567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G0I0_ECTSI8.910e-8173.33Rtdr1 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A836CN86_9STRA1.460e-4650.88Rtdr1 protein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2UZC6_9STRA9.800e-4549.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1XJA5_9STRA6.890e-4141.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482SD26_9ARCH5.080e-3039.88Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A397BLS9_9STRA5.700e-1126.58Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A3R7WL29_9STRA1.110e-1026.58Arm_2 domain-containing protein n=5 Tax=Aphanomyce... [more]
A0A6G0X1P5_9STRA7.090e-1025.15Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LNN0_9STRA3.890e-824.84Aste57867_23073 protein n=1 Tax=Aphanomyces stella... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig603contigL-elsbetiae_contig603:33508..36301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score81.3
Seed ortholog evalue5.5e-13
Seed eggNOG ortholog27923.ML14124a-PA
Preferred nameRTDR1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGs39UQN@33154,3BF0P@33208,KOG0167@1,KOG0167@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-20_002400.1
Exons5
Model size564
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig603.14567.1prot_L-elsbetiae_contig603.14567.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig603 33508..36301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.2600076-CDS-L-elsbetiae_contig603:33507..336331622816658.2600076-CDS-L-elsbetiae_contig603:33507..33633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 33508..33633 +
1691683718.5216544-CDS-L-elsbetiae_contig603:33507..336331691683718.5216544-CDS-L-elsbetiae_contig603:33507..33633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 33508..33633 +
1622816658.2734208-CDS-L-elsbetiae_contig603:34398..345051622816658.2734208-CDS-L-elsbetiae_contig603:34398..34505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 34399..34505 +
1691683718.5337884-CDS-L-elsbetiae_contig603:34398..345051691683718.5337884-CDS-L-elsbetiae_contig603:34398..34505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 34399..34505 +
1622816658.2847638-CDS-L-elsbetiae_contig603:34777..348861622816658.2847638-CDS-L-elsbetiae_contig603:34777..34886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 34778..34886 +
1691683718.5469522-CDS-L-elsbetiae_contig603:34777..348861691683718.5469522-CDS-L-elsbetiae_contig603:34777..34886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 34778..34886 +
1622816658.2959962-CDS-L-elsbetiae_contig603:35456..355591622816658.2959962-CDS-L-elsbetiae_contig603:35456..35559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 35457..35559 +
1691683718.5646913-CDS-L-elsbetiae_contig603:35456..355591691683718.5646913-CDS-L-elsbetiae_contig603:35456..35559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 35457..35559 +
1622816658.308195-CDS-L-elsbetiae_contig603:36182..363011622816658.308195-CDS-L-elsbetiae_contig603:36182..36301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 36183..36301 +
1691683718.5799942-CDS-L-elsbetiae_contig603:36182..363011691683718.5799942-CDS-L-elsbetiae_contig603:36182..36301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig603 36183..36301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig603.14567.1

>prot_L-elsbetiae_contig603.14567.1 ID=prot_L-elsbetiae_contig603.14567.1|Name=mRNA_L-elsbetiae_contig603.14567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MAEVAIENRIYRHEAKPQPTANKPGKIVEAFGLGKCPKLAEQVRSKSLLV
RVNTLRVLCEEFKNPTTIAGSVKAGLMSTLPKMVLDADLDTRKFSSKAMV
AAARDFNGRTALLEERALETVFTALDDESVDVRRNIYQTLANASTTGPGI
RALVDASYPAKLVDKAVNETEDLQPLALRVRKCLTGV*
back to top

mRNA from alignment at L-elsbetiae_contig603:33508..36301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig603.14567.1 ID=mRNA_L-elsbetiae_contig603.14567.1|Name=mRNA_L-elsbetiae_contig603.14567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2794bp|location=Sequence derived from alignment at L-elsbetiae_contig603:33508..36301+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAGGTGGCGATAGAGAACCGGATCTACAGACATGAGGCAAAGCC
ACAACCGACGGCAAACAAACCGGGCAAGATAGTAGAAGCGTTTGGGCTGG
GGAAATGCCCAAAGCTTGCAGAGCAGGTATGCTGTTATCTTCGCTTACTT
GCAGGTGTGGTGTGTGTGCAGAACAGACCCTTGGGCACATTACGATCACG
TTTAGGGCACCAAATGCATGCGTGTGCAGTTACTGTTGTTGTTGTTTTTG
AAACAAAAATTGCTGTTGTAGTTTTTTTCAAAAATATTGCACGCTGTTAT
TTTTCAGTCTGCAATCTGGTTCATCTCTACACAAACAGCTTCTTTGCTCA
CACTTCGCTCACATGCTACGAGGATGGGACGTTCCATTTGGCTGTGGGGT
GCTCACCAGCTTAGAATATCAACAGGTCGTAGAGCTCGAGGTTCGGTCTT
CATTCCCTGTATTCAGTGTGCGTCATTCCTAGAAAGGTGCCACATGACAT
ATTCACAGACAACTCAACCTTGATGTTTCGACAATAATCTACAGTCTCGC
CCGGAAGGGCATAATACATGTTGCTCAACAGCGCAGACAGTCCGTCTAGC
CTCGCGCACTACATGTTTCCACTGCCGTCGGCTTAGTTACAGCGTTGGAG
AATCCCCTCATTTGCTGGTCAGGACAACGGGTCCGAAGCCATCCAGGCAA
TCGAAGGCCGCCAAAGAACGGCAACATGGCAAGCTTAACTTACAGATTTA
TAGACAACACGCGGGTTGATCACTGCTGAACCATGCGTGTTCTCCGTCGT
AACGCGAAAAAGCTCGACCGCCCCAACATGGTTTTATGGCGTGCATACTG
GAAAAATCGTGGCTGTTCTCTGCTCGTCTTGGTGGTTTTAGGTTAGAAGC
AAGAGCCTTTTGGTTCGAGTCAACACGCTGAGAGTGCTCTGCGAAGAGTT
CAAGAATCCCACGACTATTGCTGGCAGCGTCAAGGCTGGCCTGATGAGGT
GAGTTTCTAAAATGTAGACGGTTATCTATCTCCCTTGTTGGCCGCTGTTG
CGGTGAAACGCCTATGACCGGAGAACGACAACCGTACGCCCCCGGCACTA
CCGCTGCAGACGAAAGACAATAGGAGAATGATTTCTAGAGTCACTAAGGA
CCAACACGATGAACCCGTCATTGCTATGGGCTAGAGCTTTCCACGTGCGT
CCATACGATACGAACGCTTACAGCGCGATTCCATTCCCACGAATGCCGCC
TCGCTCCCAAACCCGCCCAGCACCCTTCCGAAAATGGTGCTGGATGCCGA
TCTGGACACAAGGAAGTTCTCTTCAAAGGCCATGGTCGCGGCAGCAAGAG
ACTTCAATGGCCGCACGGCACTGCTGGAGGTACCTGTTTTTCTTCTTCGC
CAAATATGTTTCCAGTACTCGATGGGCTCCTTGTCACGAGGGCATCTTGC
CAGAGTGCTGAACCGTGGTCACACAGAAGAATTCCTCTTCCCAAAGGCCC
CCCACTACCCCCTTCTGCGATGCTTGCCTGACATTTTTATCGTGAGAGGG
TGGGTTCAGTCGGCCCTTTCCCTCGTCGACGGTGAGGTCGAAGTTTGTGT
ACACACATTATGTAAGCGATATCCGCTGACAGGGACGGAAGCGAGAGAAA
GAACTCACTTCGCAAGAAAAAGTCGCTTCCGACGGGTTTCGAACTCATCA
TATGCCTGCCAGAAGGTGTTTGGGGGTACCAACTAGACCACCGGGGCGAC
CGGCTGGAGGTGAGCGAGCGACCAATCTCAGCGGGAAGGGACACCAGAAA
AGGGCGCTGGAAGAAGTGAGCAGATAGGCCAGAAAGATGCCCTCTATCTA
GCCTATCAGAGTGATAAAATTGTGCACTCTCACTCTAAAAATTGAATTGT
GTTCCCCTGTCTCATCTGCTCGTGCCACCTTATCGTTTTACCGGCGAAGG
AGAGAGCCCTAGAGACGGTCTTCACGGCCCTGGACGATGAAAGTGTTGAC
GTCAGGAGAAACATCTACCAGACTCTTGCCAACGCCTCTACCACCGGTCC
TGGTGAGAGCAAAAGAGAGAGAGAGAAAGAGAGAGGGGTAACTGCATGAG
TCTCTACCCGTTCGAGCATCGGCCTGCCTCACAAGGGGGATCGGAGCCTA
ACAGCTGCATCCCAAAAGCCGCTTGGTGGACGTAGTTGGTTCTGCGCGCC
TCGCTTGGCTGTTTTCCACACACGCTGCTTGATTTTAGTCCTTGGCGCCA
GGGCGGGGGGGTGAGGGGTCCAACCAACGGCCTGTGTCGCACTCTGATGA
GCTGAAGTACACTGGATCGCGGGGTCCGCTCCGTTTCCGCTTTGAGTTCA
GTCACTACCCCTCATTTCGTTAGTAAATAATACTTCGACTTCATTTTTGA
CAAGGGTGGGGAGTGCCGAACCCTCTTCGCGATAAAAACATCACAGGCAG
GCACCGCAGGAGGGGGTCCACCCCTCCCCCCCTCCTGTGCGACCCCGGTT
GGGTCGCCTAACTATTTGTAGTGGAGGAAGGGGGCCAGTGGGGCTGACGG
TGAATAAGCCAATAGTAGGAGGAAGAAACAAAATCTTAAGGTTGTTTGCG
ACGGGGCACGAGGCGCTGGAGTTATAGGCCGAACCGTGGCCGTTCGCCAA
CCGGCACCCGACGGTCTTTTCGCAGGGATTCGGGCCTTGGTGGACGCCAG
TTACCCGGCCAAGCTAGTCGACAAGGCGGTCAACGAAACCGAGGACCTCC
AACCTCTAGCACTGAGGGTGAGGAAATGTCTGACGGGGGTTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig603:33508..36301+

>mRNA_L-elsbetiae_contig603.14567.1 ID=mRNA_L-elsbetiae_contig603.14567.1|Name=mRNA_L-elsbetiae_contig603.14567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig603:33508..36301+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAGGTGGCGATAGAGAACCGGATCTACAGACATGAGGCAAAGCC
ACAACCGACGGCAAACAAACCGGGCAAGATAGTAGAAGCGTTTGGGCTGG
GGAAATGCCCAAAGCTTGCAGAGCAGATGGCGGAGGTGGCGATAGAGAAC
CGGATCTACAGACATGAGGCAAAGCCACAACCGACGGCAAACAAACCGGG
CAAGATAGTAGAAGCGTTTGGGCTGGGGAAATGCCCAAAGCTTGCAGAGC
AGGTTAGAAGCAAGAGCCTTTTGGTTCGAGTCAACACGCTGAGAGTGCTC
TGCGAAGAGTTCAAGAATCCCACGACTATTGCTGGCAGCGTCAAGGCTGG
CCTGATGAGGTTAGAAGCAAGAGCCTTTTGGTTCGAGTCAACACGCTGAG
AGTGCTCTGCGAAGAGTTCAAGAATCCCACGACTATTGCTGGCAGCGTCA
AGGCTGGCCTGATGAGCACCCTTCCGAAAATGGTGCTGGATGCCGATCTG
GACACAAGGAAGTTCTCTTCAAAGGCCATGGTCGCGGCAGCAAGAGACTT
CAATGGCCGCACGGCACTGCTGGAGCACCCTTCCGAAAATGGTGCTGGAT
GCCGATCTGGACACAAGGAAGTTCTCTTCAAAGGCCATGGTCGCGGCAGC
AAGAGACTTCAATGGCCGCACGGCACTGCTGGAGGAGAGAGCCCTAGAGA
CGGTCTTCACGGCCCTGGACGATGAAAGTGTTGACGTCAGGAGAAACATC
TACCAGACTCTTGCCAACGCCTCTACCACCGGTCCTGGAGAGAGCCCTAG
AGACGGTCTTCACGGCCCTGGACGATGAAAGTGTTGACGTCAGGAGAAAC
ATCTACCAGACTCTTGCCAACGCCTCTACCACCGGTCCTGGGATTCGGGC
CTTGGTGGACGCCAGTTACCCGGCCAAGCTAGTCGACAAGGCGGTCAACG
AAACCGAGGACCTCCAACCTCTAGCACTGAGGGTGAGGAAATGTCTGACG
GGGGTTTGAGGATTCGGGCCTTGGTGGACGCCAGTTACCCGGCCAAGCTA
GTCGACAAGGCGGTCAACGAAACCGAGGACCTCCAACCTCTAGCACTGAG
GGTGAGGAAATGTCTGACGGGGGTTTGA
back to top