mRNA_L-elsbetiae_contig6025.14559.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6025.14559.1
Unique NamemRNA_L-elsbetiae_contig6025.14559.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6025.14559.1 vs. uniprot
Match: B5LWM6_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM6_9PHYC)

HSP 1 Score: 115 bits (288), Expect = 1.260e-30
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 1 
Query:    1 MNDGPVCARISCCQFNTGKLPARCGTRAVRATAASIAGMTVEPIHFASCDSCHAVVMHVGVKGCQLESVFLAPDDPRARLLCEITS-VEATAGWGKPMDGPARVVGIVNVHSAARMSEVGCVCFSCG 378
            M+   V   ++C Q   G +PAR G R V+  AA++ G+  EP+HFASC SC A  + +GVKG     + L P D RA L  +I    E  A W  P+ G   +VG+VN+H A +MSEVGC CF+CG
Sbjct:    1 MDHAEVSVVVNCYQMAAGPIPARFGCRVVKVPAAAVDGLVSEPVHFASCSSCFAATVVIGVKGASTTRMHLGPKDQRAVLFADIIKKTEHCASWESPLSGEVCIVGLVNIHGATKMSEVGCRCFNCG 127
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6025.14559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWM6_9PHYC1.260e-3044.09Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6025contigL-elsbetiae_contig6025:3352..3747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.5022354-CDS-L-elsbetiae_contig6025:3351..37471622816657.5022354-CDS-L-elsbetiae_contig6025:3351..3747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6025 3352..3747 -
1691683718.0034618-CDS-L-elsbetiae_contig6025:3351..37471691683718.0034618-CDS-L-elsbetiae_contig6025:3351..3747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6025 3352..3747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6025.14559.1prot_L-elsbetiae_contig6025.14559.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6025 3352..3747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6025.14559.1

>prot_L-elsbetiae_contig6025.14559.1 ID=prot_L-elsbetiae_contig6025.14559.1|Name=mRNA_L-elsbetiae_contig6025.14559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MNDGPVCARISCCQFNTGKLPARCGTRAVRATAASIAGMTVEPIHFASCD
SCHAVVMHVGVKGCQLESVFLAPDDPRARLLCEITSVEATAGWGKPMDGP
ARVVGIVNVHSAARMSEVGCVCFSCGTRSGS*
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mRNA from alignment at L-elsbetiae_contig6025:3352..3747-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6025.14559.1 ID=mRNA_L-elsbetiae_contig6025.14559.1|Name=mRNA_L-elsbetiae_contig6025.14559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig6025:3352..3747- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGATGGCCCTGTCTGCGCTAGAATCAGTTGTTGTCAGTTCAACAC
CGGAAAACTTCCCGCTAGGTGCGGGACGAGGGCCGTGCGAGCCACTGCTG
CGAGCATCGCTGGCATGACCGTTGAACCTATACACTTTGCTTCCTGTGAC
TCGTGTCACGCTGTTGTCATGCACGTAGGCGTCAAGGGTTGTCAATTGGA
GAGTGTTTTTCTAGCTCCCGATGACCCTCGAGCGAGGCTTCTCTGCGAGA
TTACGTCTGTTGAAGCTACCGCGGGGTGGGGAAAGCCGATGGACGGACCC
GCCCGTGTAGTCGGTATTGTCAACGTTCACTCAGCTGCTAGAATGTCTGA
GGTTGGGTGTGTGTGTTTCAGCTGCGGGACTCGTAGCGGCTCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6025:3352..3747-

>mRNA_L-elsbetiae_contig6025.14559.1 ID=mRNA_L-elsbetiae_contig6025.14559.1|Name=mRNA_L-elsbetiae_contig6025.14559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig6025:3352..3747- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGATGGCCCTGTCTGCGCTAGAATCAGTTGTTGTCAGTTCAACAC
CGGAAAACTTCCCGCTAGGTGCGGGACGAGGGCCGTGCGAGCCACTGCTG
CGAGCATCGCTGGCATGACCGTTGAACCTATACACTTTGCTTCCTGTGAC
TCGTGTCACGCTGTTGTCATGCACGTAGGCGTCAAGGGTTGTCAATTGGA
GAGTGTTTTTCTAGCTCCCGATGACCCTCGAGCGAGGCTTCTCTGCGAGA
TTACGTCTGTTGAAGCTACCGCGGGGTGGGGAAAGCCGATGGACGGACCC
GCCCGTGTAGTCGGTATTGTCAACGTTCACTCAGCTGCTAGAATGTCTGA
GGTTGGGTGTGTGTGTTTCAGCTGCGGGACTCGTAGCGGCTCATGAATGA
ACGATGGCCCTGTCTGCGCTAGAATCAGTTGTTGTCAGTTCAACACCGGA
AAACTTCCCGCTAGGTGCGGGACGAGGGCCGTGCGAGCCACTGCTGCGAG
CATCGCTGGCATGACCGTTGAACCTATACACTTTGCTTCCTGTGACTCGT
GTCACGCTGTTGTCATGCACGTAGGCGTCAAGGGTTGTCAATTGGAGAGT
GTTTTTCTAGCTCCCGATGACCCTCGAGCGAGGCTTCTCTGCGAGATTAC
GTCTGTTGAAGCTACCGCGGGGTGGGGAAAGCCGATGGACGGACCCGCCC
GTGTAGTCGGTATTGTCAACGTTCACTCAGCTGCTAGAATGTCTGAGGTT
GGGTGTGTGTGTTTCAGCTGCGGGACTCGTAGCGGCTCATGA
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