mRNA_L-elsbetiae_contig6025.14558.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6025.14558.1
Unique NamemRNA_L-elsbetiae_contig6025.14558.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: Q6XM73_9PHYC (FirrV-1-A14 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM73_9PHYC)

HSP 1 Score: 179 bits (455), Expect = 1.110e-53
Identity = 95/193 (49.22%), Postives = 133/193 (68.91%), Query Frame = 1
Query:    1 MALPRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFG-QLPDVACKYYECAIAD-NIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKRVNMVACRDMLVFFPLHAGKMTMVRGSTGHEATFVCTKRHWKTHKF-AQTSTGEGTSMIAGSYFNELDIRKVMIC 570
            M  PRVSI+TPT  SRA+FA L  RN++ QTYP   +E VVVGD D   R+V+ S+   + P++  +Y+E + +D +IG KRN+AC  A++KIL + DDDD+YH  Y+E AV+ +R ++VN+V CRDM+V+F    GK+  VRGS  HEAT VCTK+HW    +  +T  GE   ++ GS++NELDI + MIC
Sbjct:    1 MECPRVSILTPTMASRARFAPLALRNIVSQTYPASRIEWVVVGDADRTARKVFESLESPESPEL--RYFEYSGSDTSIGAKRNYACSVATSKILVNVDDDDLYHPRYVENAVRELRGRKVNLVGCRDMMVYF-FDDGKLIYVRGSHVHEATIVCTKQHWTQFPYRCETDRGEARPLLQGSFYNELDISQTMIC 190          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A6C0KAW4_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KAW4_9ZZZZ)

HSP 1 Score: 67.0 bits (162), Expect = 4.440e-10
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1
Query:    1 MALPRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKRVNMVACRDMLVFF 390
            M  P VSI TPT ++R KF   L +    QTYPQ L+E ++V D + +  +++  V G       KY+       +GRKRNF   K   +I+   DDDD Y    + ++V  +R +   M A   ++  +
Sbjct:   14 MGKPFVSICTPT-YNRRKFIPQLIKCYKQQTYPQELMEWIIVDDGEDKVEDLFKDVPG------VKYFRLEEKMKLGRKRNFMHEKTKGEIIVYMDDDDYYPPDRVNHSVNRLRSQPKAMAAGSSIVYIY 136          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A6C0CQ75_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CQ75_9ZZZZ)

HSP 1 Score: 65.1 bits (157), Expect = 2.230e-9
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   16 VSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKR 351
            VSI TPT ++R KF   L +  L QTYPQ L+E +V+ D D +  +++  V G       KY+       +G+KRN    K +  I+   DDDD Y    + +AV  +  K+
Sbjct:   19 VSICTPT-YNRRKFIPFLIKCYLNQTYPQELIEWIVIDDGDDKVEDLFKDVPG------VKYFYYPEKMKLGKKRNLMHEKTTGDIIVYMDDDDYYPPTRVSHAVSKLAAKK 123          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A7X0J6S0_9SPHI (Glycosyltransferase involved in cell wall biosynthesis n=1 Tax=Pedobacter cryoconitis TaxID=188932 RepID=A0A7X0J6S0_9SPHI)

HSP 1 Score: 64.3 bits (155), Expect = 3.120e-9
Identity = 51/164 (31.10%), Postives = 71/164 (43.29%), Query Frame = 1
Query:   37 TFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVA-CKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKRVNMVACRDMLVFFPL------HAGKMTMVRGSTGHEATFVCTKRHWKTHKFAQTSTGE 507
            T +R  F AL     L Q Y    +ELV++ D     R +       LPD    KY+       IG+KRN+AC +AS +I+  +DDDD Y   +I   +  + +   ++     +L F PL      +A K T      G  AT    K  WK H F     GE
Sbjct:    3 TANRPNFVALAADYFLNQDYRN--VELVIIDDGKESVRSI-------LPDHRRIKYFYVDPIGTIGKKRNYACERASGEIIMHWDDDDWYAHDWISRQIAALTQSDADICGLNQILFFSPLVNKFWNYANKDTERPWLAG--ATMAYRKSFWKDHPFKDIHIGE 155          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A2E0E6J4_9RHOB (Glyco_trans_2-like domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2E0E6J4_9RHOB)

HSP 1 Score: 63.9 bits (154), Expect = 5.840e-9
Identity = 45/167 (26.95%), Postives = 74/167 (44.31%), Query Frame = 1
Query:   13 RVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKRVNMVACRDMLVFFPLHAGKMTMVRGSTGHEATFVCTKRHWKTHKFAQTSTGEGT 513
            +VSI TPT ++R KF   L +  + QTYPQ L+E +++ D + +  +++  V G       KY+       +G+KRN    K +  I+   DDDD Y    + +AV  +  K                   K  +  GS+     F  T++ W+   + +T    GT
Sbjct:   18 KVSICTPT-YNRRKFIPFLIKCYMNQTYPQELIEWIIIDDGEDKVEDLFKDVPG------VKYFYYPEKMKLGKKRNLMHEKTTGDIIVYMDDDDYYPPTRVSHAVSKLASK-------------------KEVLCSGSSIVHIYFKDTEKIWEFGPYGKTHATAGT 158          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A6C0K7Q4_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K7Q4_9ZZZZ)

HSP 1 Score: 63.5 bits (153), Expect = 7.240e-9
Identity = 55/198 (27.78%), Postives = 87/198 (43.94%), Query Frame = 1
Query:    1 MALPRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREK-RVNMVACRDMLVFFP-----LHAGKMTMVRGSTGHEATFVCTKRHWKTHKFAQTSTGEGTSMIAGSYFN---ELDIRKVMI 567
            MA+P VSI+TPT ++R +F   L R +  QTYP+  +E +V  D      ++      +LP     Y        +G KRN    +A  +IL +FDDDD Y    +  AV  +R    V++    ++ ++F      L  G       + G   T    KR+  +H + +            SY N   +L+  KVM+
Sbjct:    1 MAMPLVSIVTPT-YNRRRFFPTLIRMIETQTYPRDRMEWIVYDDGQDPVGDLIDEAQHRLPRTI--YIRDEEKQTLGEKRNRLNREAKGEILVAFDDDDFYFPERVSAAVTALRSNPTVDLAGSSEVYMYFTDTKEILKIGPYGKTHATNG---TMAWRKRYASSHVYDEAVAFAEEKSFLDSYKNSLIQLNPMKVML 192          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A6C0AJB0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AJB0_9ZZZZ)

HSP 1 Score: 61.6 bits (148), Expect = 8.830e-8
Identity = 52/181 (28.73%), Postives = 75/181 (41.44%), Query Frame = 1
Query:    7 LPRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKRVNMVACRDMLVFFPLHAGK-------MTMVRGSTGHEATFVCTKRHWKTHKFAQTSTGEGTSMIAG 528
            LP VSIIT T   R  F  L     L QTYP+HLLE V+V       ++   ++   LP+V     +  +   IG  RN A  KA + +L   DDDD+Y    +   V  +            +L  + +H  K       +T+       EAT   T++ W    F      EG + + G
Sbjct:  342 LPPVSIITITR-DRRPFIPLAKYGFLAQTYPEHLLEWVIVDSG----KDPIKNLITDLPNVTYVLVDEPLT--IGEMRNLAISKAKHDVLVMMDDDDVYPNNSVLTRVAHLLAAPSKGCIFSTVLPCYEIHETKSFMNVPPITLPMSQRVSEATMCMTRKFWLDRPFPNAQIAEGDAFLHG 515          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A6C0ELQ5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ELQ5_9ZZZZ)

HSP 1 Score: 60.1 bits (144), Expect = 2.970e-7
Identity = 57/182 (31.32%), Postives = 74/182 (40.66%), Query Frame = 1
Query:    7 LPRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGD-TDPRTREVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKRVNMVACRDMLVFFPLHAGK-------MTMVRGSTGHEATFVCTKRHWKTHKFAQTSTGEGTSMIAG 528
            LP VSIIT T   R  F  L     L QTYP+ L+E V+V D TDP        +   LP+V   Y        IG KRN A  KA + +L   DDDD+Y    +   V  M  +         +L  + +H  K       +T+       EAT   T+  W    F      E  + I G
Sbjct:  338 LPPVSIITLTR-DRRMFIPLAKYCFLAQTYPEQLVEWVIVDDGTDP-----IKDMVSDLPNVT--YVLVDEPMTIGAKRNLAISKAKHDVLVMMDDDDVYPNNSVLTRVAHMIAEPRKECLFSTVLPCYEIHETKSFMNVPPITLDMSKRVSEATLCFTRAFWTERGFPDQQIAEADAFIHG 511          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A6C0F661_9ZZZZ (Glyco_trans_2-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F661_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-6
Identity = 49/181 (27.07%), Postives = 75/181 (41.44%), Query Frame = 1
Query:    7 LPRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTMREKRVNMVACRDMLVFFPLHAGK-------MTMVRGSTGHEATFVCTKRHWKTHKFAQTSTGEGTSMIAG 528
            LP +S+IT T   RA F  L+   ++ QTYP   +E ++V D   + +++   +   +      Y        IG KRN A   ASNKI+ + DDDD+Y    +   V  M  +         ++  + +H  K       M +       EAT   T   W+  +F      EG   I G
Sbjct:  336 LPHISVITITRDRRA-FIPLVKYGLIAQTYPAEKIEWIIVDDGKDQIKDLVSDMKNVI------YVLVDEPMTIGAKRNLAVSYASNKIIVTMDDDDVYPSNSLLSRVAHMLAEPKKECLFSTVIPCYDIHEKKSFMNVPPMKLPMCERVSEATLCFTWDFWEAGRFPDQQIAEGGGFIRG 509          
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Match: A0A2D7N963_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D7N963_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.890e-5
Identity = 39/114 (34.21%), Postives = 53/114 (46.49%), Query Frame = 1
Query:   10 PRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTREVYLSVFGQLPDVACK---YYE-CAIADNIGRKRNFACGKASNKILASFDDDDMYHKWYIEYAVQTM 339
            P VSI T  TF+R  F  +    V  Q YP HLLE ++V D+D              P ++     YYE   I   IG KRN +    +  I+  FDDDD Y    +  AV+++
Sbjct:  317 PSVSICT-VTFNRPDFLKIAEEFVKAQDYPHHLLEWIIVDDSDENN--------SYKPSISTNIKIYYERLPIKITIGEKRNISHKLCNGDIVVYFDDDDYYPPSRVSTAVKSL 421          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6025.14558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Q6XM73_9PHYC1.110e-5349.22FirrV-1-A14 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A6C0KAW4_9ZZZZ4.440e-1032.31Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A6C0CQ75_9ZZZZ2.230e-934.82Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A7X0J6S0_9SPHI3.120e-931.10Glycosyltransferase involved in cell wall biosynth... [more]
A0A2E0E6J4_9RHOB5.840e-926.95Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A6C0K7Q4_9ZZZZ7.240e-927.78Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A6C0AJB0_9ZZZZ8.830e-828.73Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0ELQ5_9ZZZZ2.970e-731.32Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0F661_9ZZZZ1.360e-627.07Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A2D7N963_9BACT6.890e-534.21Uncharacterized protein n=1 Tax=Candidatus Marinim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6025contigL-elsbetiae_contig6025:224..793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size570
Cds size570
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.4478133-CDS-L-elsbetiae_contig6025:223..7931622816657.4478133-CDS-L-elsbetiae_contig6025:223..793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6025 224..793 -
1691683717.988596-CDS-L-elsbetiae_contig6025:223..7931691683717.988596-CDS-L-elsbetiae_contig6025:223..793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6025 224..793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6025.14558.1prot_L-elsbetiae_contig6025.14558.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6025 224..793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6025.14558.1

>prot_L-elsbetiae_contig6025.14558.1 ID=prot_L-elsbetiae_contig6025.14558.1|Name=mRNA_L-elsbetiae_contig6025.14558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MALPRVSIITPTTFSRAKFAALLTRNVLCQTYPQHLLELVVVGDTDPRTR
EVYLSVFGQLPDVACKYYECAIADNIGRKRNFACGKASNKILASFDDDDM
YHKWYIEYAVQTMREKRVNMVACRDMLVFFPLHAGKMTMVRGSTGHEATF
VCTKRHWKTHKFAQTSTGEGTSMIAGSYFNELDIRKVMIC
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mRNA from alignment at L-elsbetiae_contig6025:224..793-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6025.14558.1 ID=mRNA_L-elsbetiae_contig6025.14558.1|Name=mRNA_L-elsbetiae_contig6025.14558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig6025:224..793- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACTGCCGAGAGTGTCTATAATCACACCGACGACGTTTTCAAGAGC GAAATTTGCAGCTCTGCTGACGAGGAACGTACTGTGTCAGACATATCCCC AGCATCTGCTAGAGCTTGTTGTGGTTGGCGACACAGACCCAAGGACGAGA GAAGTTTACTTGAGCGTGTTCGGCCAACTTCCCGACGTAGCATGCAAGTA CTACGAATGTGCCATAGCCGACAATATTGGGCGAAAGCGCAACTTCGCAT GCGGCAAGGCCAGCAATAAAATACTGGCGAGCTTTGACGATGACGATATG TATCACAAATGGTATATTGAATACGCCGTGCAGACCATGAGAGAGAAGAG GGTCAACATGGTAGCTTGCCGTGATATGCTTGTGTTTTTCCCACTCCATG CCGGTAAAATGACCATGGTGCGGGGGTCGACAGGACACGAAGCGACATTT GTCTGCACCAAACGTCACTGGAAGACACATAAATTCGCACAGACATCCAC CGGCGAGGGAACGAGTATGATTGCAGGTTCTTATTTCAACGAACTCGACA TTCGAAAAGTCATGATATGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6025:224..793-

>mRNA_L-elsbetiae_contig6025.14558.1 ID=mRNA_L-elsbetiae_contig6025.14558.1|Name=mRNA_L-elsbetiae_contig6025.14558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig6025:224..793- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACTGCCGAGAGTGTCTATAATCACACCGACGACGTTTTCAAGAGC
GAAATTTGCAGCTCTGCTGACGAGGAACGTACTGTGTCAGACATATCCCC
AGCATCTGCTAGAGCTTGTTGTGGTTGGCGACACAGACCCAAGGACGAGA
GAAGTTTACTTGAGCGTGTTCGGCCAACTTCCCGACGTAGCATGCAAGTA
CTACGAATGTGCCATAGCCGACAATATTGGGCGAAAGCGCAACTTCGCAT
GCGGCAAGGCCAGCAATAAAATACTGGCGAGCTTTGACGATGACGATATG
TATCACAAATGGTATATTGAATACGCCGTGCAGACCATGAGAGAGAAGAG
GGTCAACATGGTAGCTTGCCGTGATATGCTTGTGTTTTTCCCACTCCATG
CCGGTAAAATGACCATGGTGCGGGGGTCGACAGGACACGAAGCGACATTT
GTCTGCACCAAACGTCACTGGAAGACACATAAATTCGCACAGACATCCAC
CGGCGAGGGAACGAGTATGATTGCAGGTTCTTATTTCAACGAACTCGACA
TTCGAAAAGTCATGATATGTATGGCACTGCCGAGAGTGTCTATAATCACA
CCGACGACGTTTTCAAGAGCGAAATTTGCAGCTCTGCTGACGAGGAACGT
ACTGTGTCAGACATATCCCCAGCATCTGCTAGAGCTTGTTGTGGTTGGCG
ACACAGACCCAAGGACGAGAGAAGTTTACTTGAGCGTGTTCGGCCAACTT
CCCGACGTAGCATGCAAGTACTACGAATGTGCCATAGCCGACAATATTGG
GCGAAAGCGCAACTTCGCATGCGGCAAGGCCAGCAATAAAATACTGGCGA
GCTTTGACGATGACGATATGTATCACAAATGGTATATTGAATACGCCGTG
CAGACCATGAGAGAGAAGAGGGTCAACATGGTAGCTTGCCGTGATATGCT
TGTGTTTTTCCCACTCCATGCCGGTAAAATGACCATGGTGCGGGGGTCGA
CAGGACACGAAGCGACATTTGTCTGCACCAAACGTCACTGGAAGACACAT
AAATTCGCACAGACATCCACCGGCGAGGGAACGAGTATGATTGCAGGTTC
TTATTTCAACGAACTCGACATTCGAAAAGTCATGATATGT
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