mRNA_L-elsbetiae_contig6022.14555.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6022.14555.1
Unique NamemRNA_L-elsbetiae_contig6022.14555.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6022.14555.1 vs. uniprot
Match: D7G2U2_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.430e-16
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 2 
Query:  110 LPPLLKAFSSLLRSLATIDWLAAALTMLTRWAHSRGAQTVAGQQAASRWGA 262
            LPPLLKA S LLR LA  +WLA ALT+LTRWAHSRGAQT AGQQAASRWGA
Sbjct:   57 LPPLLKAMSGLLRCLAATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGA 107
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BLAST of mRNA_L-elsbetiae_contig6022.14555.1 vs. uniprot
Match: A0A6H5LD86_9PHAE (DUF913 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD86_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.910e-16
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 2 
Query:  110 LPPLLKAFSSLLRSLATIDWLAAALTMLTRWAHSRGAQTVAGQQAASRWGA 262
            LPPLLKA S LLR L   +WLA ALT+LTRWAHSRGAQT AGQQAASRWGA
Sbjct:  727 LPPLLKAMSGLLRCLTATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGA 777
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6022.14555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2U2_ECTSI1.430e-1682.35UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LD86_9PHAE4.910e-1680.39DUF913 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6022contigL-elsbetiae_contig6022:11258..11519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue8.3e-14
Seed eggNOG ortholog2880.D7G2U2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin associated domain
EggNOG OGs2D4WP@1,2SWJ7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-16_001500.1
Exons1
Model size264
Cds size249
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.1680796-UTR-L-elsbetiae_contig6022:11257..112701622816657.1680796-UTR-L-elsbetiae_contig6022:11257..11270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6022 11258..11270 +
1691683717.7815855-UTR-L-elsbetiae_contig6022:11257..112701691683717.7815855-UTR-L-elsbetiae_contig6022:11257..11270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6022 11258..11270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.181822-CDS-L-elsbetiae_contig6022:11270..115191622816657.181822-CDS-L-elsbetiae_contig6022:11270..11519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6022 11271..11519 +
1691683717.7978067-CDS-L-elsbetiae_contig6022:11270..115191691683717.7978067-CDS-L-elsbetiae_contig6022:11270..11519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6022 11271..11519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6022.14555.1prot_L-elsbetiae_contig6022.14555.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6022 11271..11519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6022.14555.1

>prot_L-elsbetiae_contig6022.14555.1 ID=prot_L-elsbetiae_contig6022.14555.1|Name=mRNA_L-elsbetiae_contig6022.14555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
METETAAVADGGEGTKGSSEASPATTTTIVEGLPPLLKAFSSLLRSLATI
DWLAAALTMLTRWAHSRGAQTVAGQQAASRWGA
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mRNA from alignment at L-elsbetiae_contig6022:11258..11519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6022.14555.1 ID=mRNA_L-elsbetiae_contig6022.14555.1|Name=mRNA_L-elsbetiae_contig6022.14555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=262bp|location=Sequence derived from alignment at L-elsbetiae_contig6022:11258..11519+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGCCCCGCCGATGGAGACGGAGACGGCGGCGGTGGCGGACGGGGGCG
AGGGGACCAAGGGTTCCTCGGAGGCTTCTCCTGCGACGACGACGACGATC
GTTGAAGGGCTTCCCCCTCTGCTGAAGGCCTTTTCCTCTCTTCTCCGCAG
CCTCGCGACCATCGACTGGCTCGCCGCCGCGCTGACGATGCTGACGCGGT
GGGCGCACTCCCGCGGTGCGCAGACGGTGGCGGGGCAGCAAGCGGCCAGC
CGGTGGGGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6022:11258..11519+

>mRNA_L-elsbetiae_contig6022.14555.1 ID=mRNA_L-elsbetiae_contig6022.14555.1|Name=mRNA_L-elsbetiae_contig6022.14555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig6022:11258..11519+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGACGGAGACGGCGGCGGTGGCGGACGGGGGCGAGGGGACCAAGGG
TTCCTCGGAGGCTTCTCCTGCGACGACGACGACGATCGTTGAAGGGCTTC
CCCCTCTGCTGAAGGCCTTTTCCTCTCTTCTCCGCAGCCTCGCGACCATC
GACTGGCTCGCCGCCGCGCTGACGATGCTGACGCGGTGGGCGCACTCCCG
CGGTGCGCAGACGGTGGCGGGGCAGCAAGCGGCCAGCCGGTGGGGAGCGA
TGGAGACGGAGACGGCGGCGGTGGCGGACGGGGGCGAGGGGACCAAGGGT
TCCTCGGAGGCTTCTCCTGCGACGACGACGACGATCGTTGAAGGGCTTCC
CCCTCTGCTGAAGGCCTTTTCCTCTCTTCTCCGCAGCCTCGCGACCATCG
ACTGGCTCGCCGCCGCGCTGACGATGCTGACGCGGTGGGCGCACTCCCGC
GGTGCGCAGACGGTGGCGGGGCAGCAAGCGGCCAGCCGGTGGGGAGCG
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