prot_L-elsbetiae_contig6013.14544.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6013.14544.1
Unique Nameprot_L-elsbetiae_contig6013.14544.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length136
Homology
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BLAST of mRNA_L-elsbetiae_contig6013.14544.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-11
Identity = 83/112 (74.11%), Postives = 86/112 (76.79%), Query Frame = 0 
Query:   25 EEMRSAGVKPDVMTFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCSALPPRAGGGAVRGGGGSGSHRALRLLERMSADPRPEAQPEALSYTLAIKACGRE 136
            EEMRSAGV+PDV     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TGCS  P          G      RALRLLE M+ADPRPEAQPEALSYTL +KACGRE
Sbjct:  270 EEMRSAGVQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGCSCGPXXXXXXXXXXGE---VERALRLLEEMAADPRPEAQPEALSYTLVLKACGRE 378
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6013.14544.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE2_ECTSI1.000e-1174.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..84
e-value: 3.5E-28
score: 100.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 23..81
e-value: 1.1E-13
score: 51.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 38..71
e-value: 2.1E-5
score: 22.4
coord: 3..36
e-value: 4.1E-9
score: 34.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..34
score: 12.595
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 35..69
score: 11.203
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6013contigL-elsbetiae_contig6013:8705..10311 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6013.14544.1mRNA_L-elsbetiae_contig6013.14544.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6013 8705..10312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6013.14544.1 ID=prot_L-elsbetiae_contig6013.14544.1|Name=mRNA_L-elsbetiae_contig6013.14544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
VAVYNAAISAVSRSGKWDEALGLLEEMRSAGVKPDVMTFTSVISAGSRSG
RVSLAEQILDTMRAEGVPPNAATYNAVITGCSALPPRAGGGAVRGGGGSG
SHRALRLLERMSADPRPEAQPEALSYTLAIKACGRE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat