mRNA_L-elsbetiae_contig6013.14544.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6013.14544.1
Unique NamemRNA_L-elsbetiae_contig6013.14544.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6013.14544.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-11
Identity = 83/112 (74.11%), Postives = 86/112 (76.79%), Query Frame = 1 
Query:   73 EEMRSAGVKPDVMTFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCSALPPRAGGGAVRGGGGSGSHRALRLLERMSADPRPEAQPEALSYTLAIKACGRE 408
            EEMRSAGV+PDV     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TGCS  P          G      RALRLLE M+ADPRPEAQPEALSYTL +KACGRE
Sbjct:  270 EEMRSAGVQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGCSCGPXXXXXXXXXXGE---VERALRLLEEMAADPRPEAQPEALSYTLVLKACGRE 378
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6013.14544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE2_ECTSI1.000e-1174.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6013contigL-elsbetiae_contig6013:8705..10312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D8LEE2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size409
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6013.14544.1prot_L-elsbetiae_contig6013.14544.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6013 8705..10311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.676551-CDS-L-elsbetiae_contig6013:8704..87611622816655.676551-CDS-L-elsbetiae_contig6013:8704..8761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 8705..8761 +
1691683716.6200027-CDS-L-elsbetiae_contig6013:8704..87611691683716.6200027-CDS-L-elsbetiae_contig6013:8704..8761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 8705..8761 +
1622816655.6908293-CDS-L-elsbetiae_contig6013:9243..92941622816655.6908293-CDS-L-elsbetiae_contig6013:9243..9294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 9244..9294 +
1691683716.6376412-CDS-L-elsbetiae_contig6013:9243..92941691683716.6376412-CDS-L-elsbetiae_contig6013:9243..9294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 9244..9294 +
1622816655.7042105-CDS-L-elsbetiae_contig6013:10011..103111622816655.7042105-CDS-L-elsbetiae_contig6013:10011..10311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 10012..10311 +
1691683716.6559055-CDS-L-elsbetiae_contig6013:10011..103111691683716.6559055-CDS-L-elsbetiae_contig6013:10011..10311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 10012..10311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6013.14544.1

>prot_L-elsbetiae_contig6013.14544.1 ID=prot_L-elsbetiae_contig6013.14544.1|Name=mRNA_L-elsbetiae_contig6013.14544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
VAVYNAAISAVSRSGKWDEALGLLEEMRSAGVKPDVMTFTSVISAGSRSG
RVSLAEQILDTMRAEGVPPNAATYNAVITGCSALPPRAGGGAVRGGGGSG
SHRALRLLERMSADPRPEAQPEALSYTLAIKACGRE
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mRNA from alignment at L-elsbetiae_contig6013:8705..10312+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6013.14544.1 ID=mRNA_L-elsbetiae_contig6013.14544.1|Name=mRNA_L-elsbetiae_contig6013.14544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1608bp|location=Sequence derived from alignment at L-elsbetiae_contig6013:8705..10312+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGCCGTGTACAACGCGGCGATCAGCGCTGTGTCCAGGAGCGGAAAGTG
GGACGAGGTGGGTTTCGCCGCTGAAGGAGGCTTTTTATAAATACCTAAAA
GTGTGTATCGCAAGAAGCATCGATCGCCTCAGCCGGTTGCGGAAGGGCTT
CTGGTCTTGGTGTCATCGGTTGCTGTGAGCTGCGTTATGACGTCACGTGT
GTAAAATAGATATCTACAGCTTGTGTTGTTTTCGTTACGGGTGATTTACA
AACTCCAAAGCAGCATGTATGTAGACTACCACCAATAAATCTGCCTCGTG
TTTGGTTGGACCCGAAGAGAAAAGACTGTTGGTTTGCGATTGCTGTCGTT
TTTGTTGCGCTTCTCTTTCTCCCTTTCACCTTGCCGTTACACACGTACAT
GCCAATTTCTCCACGTCTCCTTCCGCGTTCCGTGTATGTGCTCGGTATAA
CCGGCGAACCTGCTACTACCGCGTCCGTTTGTCTTGTCCTTTTTCCCGCT
CTGCTTTTGCTCTCAACTTTTGATTCTGCTGGCACGCAGGCACTGGGTCT
GCTGGAAGAGATGCGTTCGGCGGGTGTGAAGCCCGACGTGGTGAGATTCT
CGTTTTCTGGGGTGCTTTATTTAGGATACACAACATACGGAAAGAGACGA
TAATCCTTCTGTGCTCCTGCAGCCACTGCTGGTTTAGTACCTACCATAGT
ATTTATGTGTGTACCTATCTCAACAGCAGCGCGCGTTTCGATCTCGTCGC
TAGTCTCGATTCGACTCCTACGCCTCCCATCCACGGCATGTCATTCTCAA
AAACCGAAATAAAGCTGTATTCGTTCGGTTCTCGAACTGTCGGAGCTCGG
GACCCTTCCTTGCCCCCCCCCCCCTCCCCAGGAATCTTTCCTCTATTTTC
TGAGGGAGAGCGCTTGATTTCCAACGAGAAGCTACTCGAGGGGTCATTCT
TCAACGTTTCTTTGCACCGGTGCCCCCCCCTCCTTTCCCCCCCCGAGTTT
CAAGTGTTCCGAAGATCCGCAAGCTCATACGTAGGGGTATGTCATCGCTA
TTCACGCCAGTCGCCGAACCCCCCCCCGTCCCGTCCCGTGCCACAGCAGC
ATCGGGCATCATGGTACAAATAAAATCCTATATTAGGTAGCAAGTGCGTT
TAACCTACTCCCACGTGGCGGCTTACCGTTGCACCCCTTCGACTCCGCCT
GCCCGGTGCTGACCTACATACCGGTGCTTCGATACACCGTGCCCCCGTAC
AAATAGACCAACCCAACCCCACCCCCCCCAACCCCATGCCGAAAAACACG
CCAACAGATGACCTTCACGAGCGTAATCTCGGCGGGATCGCGAAGCGGAA
GGGTCTCCCTCGCCGAGCAGATCCTCGACACTATGCGGGCGGAAGGGGTG
CCCCCCAACGCCGCCACGTACAACGCCGTCATCACGGGCTGCTCCGCCCT
TCCTCCTAGGGCCGGGGGTGGAGCCGTCCGGGGCGGCGGCGGCAGTGGAT
CGCACAGGGCGCTGCGGCTGCTGGAGAGAATGTCCGCAGATCCCCGCCCG
GAAGCCCAGCCGGAGGCGCTGAGCTACACGCTGGCGATCAAGGCTTGCGG
GAGAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6013:8705..10312+

>mRNA_L-elsbetiae_contig6013.14544.1 ID=mRNA_L-elsbetiae_contig6013.14544.1|Name=mRNA_L-elsbetiae_contig6013.14544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig6013:8705..10312+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGCCGTGTACAACGCGGCGATCAGCGCTGTGTCCAGGAGCGGAAAGTG
GGACGAGGTGGCCGTGTACAACGCGGCGATCAGCGCTGTGTCCAGGAGCG
GAAAGTGGGACGAGGCACTGGGTCTGCTGGAAGAGATGCGTTCGGCGGGT
GTGAAGCCCGACGTGGCACTGGGTCTGCTGGAAGAGATGCGTTCGGCGGG
TGTGAAGCCCGACGTGATGACCTTCACGAGCGTAATCTCGGCGGGATCGC
GAAGCGGAAGGGTCTCCCTCGCCGAGCAGATCCTCGACACTATGCGGGCG
GAAGGGGTGCCCCCCAACGCCGCCACGTACAACGCCGTCATCACGGGCTG
CTCCGCCCTTCCTCCTAGGGCCGGGGGTGGAGCCGTCCGGGGCGGCGGCG
GCAGTGGATCGCACAGGGCGCTGCGGCTGCTGGAGAGAATGTCCGCAGAT
CCCCGCCCGGAAGCCCAGCCGGAGGCGCTGAGCTACACGCTGGCGATCAA
GGCTTGCGGGAGAGAGATGACCTTCACGAGCGTAATCTCGGCGGGATCGC
GAAGCGGAAGGGTCTCCCTCGCCGAGCAGATCCTCGACACTATGCGGGCG
GAAGGGGTGCCCCCCAACGCCGCCACGTACAACGCCGTCATCACGGGCTG
CTCCGCCCTTCCTCCTAGGGCCGGGGGTGGAGCCGTCCGGGGCGGCGGCG
GCAGTGGATCGCACAGGGCGCTGCGGCTGCTGGAGAGAATGTCCGCAGAT
CCCCGCCCGGAAGCCCAGCCGGAGGCGCTGAGCTACACGCTGGCGATCAA
GGCTTGCGGGAGAGAG
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